morexGenes - Barley RNA-seq Database

Contig contig_129046

Source Contig contig_129046

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_129046 (1596 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_129046

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3244	1	630 bp	MLOC_3244.1	Available	Available	LOC_Os02g01890.1, FRAME:+1, EVALUE:1e-15, 13102.m00117 protein cytochrome P450, putative, expressed

CDS Structure of MLOC_3244

Contig Sequence (1596 bp)

>contig_129046 1596 assembly3_WGSMorex_rbca.fasta
TTTTCAAATAATAATATCTTTTAAACTGTAAATCTAATTTAAACATGTTATATATGAAAN
NNNNNNAGAAAAATGTGTAGAGTTTGAATATGTTGTTATTTTACATGTCAAATAATTTTA
ATAACTCTGGAATCTATTCAGAATAAATATGTATTTTTAAATAATAATATTTTTTAACCA
TAAATCCAATTTAAACATGTTATATATCAAATTTGTTTGGAATTTGTAGAGTTTGAATAT
GTTGTTATTTAATATTTTTAAAATACTATATAGGGTATAATGTAAATCAGTATTTGTCTT
TATTTCATACGATCTGTATTCTAACATGTAAATTTAAATGTCAATATTTGGGAAATGTTA
TAATCTAAGTTCTTTCTTTATACATATTTCATGGTTTAACACCTTACGTACGTGCTTTTT
CTTGGCAGAAGCCACGCGTGTTCTTATCAACGGACTACACTTTTTTTAGTAAATAGACAA
ACAATTTTTATAGGATGTACATGTACTTATAAAATTGATGAACATCAAAGTACATGAAGG
TTTATTTTAAAAGAAAAATTGAACTATTCATCTGATAATAATGAATGTTGATAGTTTATT
TTTTTAGGATAACGGTTGAATTCATAAGTGCAATCTTAGTATATTTTTCATCTATTGCAT
ATGATGGCTATACATATAGGCTTTTTAGAATATATCTATTTCATAAACGTTGCTTCCTCA
GTGTCGAACGACACCACGTCGATGATGCATGAATGTGGTCGTAGGTGCACAACATCAATA
TGACGAGTCAGAATCAAAATTGGATTAGAATGATAGTGTCTCAGCAAGAAATATTTACTA
CCCGTTGCAACGCACGGGCATATTTGCTAATAAGTTTTCATTTAACTAGCATCGATACCT
CAACATATAGGAGTTTTATTATCCGTTGCAATGTACGGACACTTTTGCTAGTAGATTAAT
AAAAAAGCGATAATTCTCAAAAAAGAAAAAAAAAAAGTTAAGTAGTTGCACGGCACATAA
TTTTCGTAAGGTCAATTCTTTCCCGTAGATCGCGCATTATTGGCACGGACGTGACCTCAG
GTTGTCGATGAGTTTATTTGTAATCTATTCTCTCCCATCAGTTCCGTATATCGAAATCGA
CAAGAGCTGAATGCGACCAATGCGAGTATGCGACGACCAAATGTCAAGACGCCAATTCAG
CTCTTGTACTGCTCCAGTTAACTCGAAGGATTGCACTGGAGCAGTACAAGCTGCGTCAGA
ATAGCTTGAGCTGCAACGATGGATCTCACGGCCTGGCCACCGCTCCTCTTGCTCATCACT
CTCTTGCTCTCGCTCGCAGCTTCGCTCCTCTTCTTGCTCAGCAGCCGCCACGGCGTCGAC
AAGAAGGCGACTGGTAAGGAGCTCCCCCCAGGCCCGCCGGCGCTGCTCTTCCTGGCCAAG
TTCCTAGCACTCCGGCAGTCCATCTTCCACCTTGAGCCGCTCCTCCGCGACCTGCACGCG
CGCTACGGCCCCGTCATCTCCATCCGCCTCTTCCGCGCCCTCGTCTTCGTCTCCGACCGC
CGCCTCGCCCACCGCGTCCTCGTCCAGGGCGGCTCC