Contig Data
morexGenes
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Map Locations of contig_128965 (4274 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_128965

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_3236 1 1695 bp MLOC_3236.1 Available Available LOC_Os05g46520.1, FRAME:-3, EVALUE:2e-162, 13105.m04970 protein polygalacturonase, putative, expressed





CDS Structure of MLOC_3236






Contig Sequence (4274 bp)

>contig_128965 4274 assembly3_WGSMorex_rbca.fasta
TGGCATCGGCTATCGAAGGCTCTAGGCCGTAATCGGAAGCGGGGACAGAGGGAATAGGTG
CGGGCACTCATGTAGAGCTCGATACCGAGGTCGGGGAGGCCGGAGAAGCAGCAACGGCGA
AGGAATCGACGACGAACGACGACGGCCGGAGCTGGAGATGGAGCAAGATCCCGACTGATT
CGTGGCGAATTCGATCGATTTGTTTCTCCTCGCCTCTTGTTAGTAGGCATAAGAGTCCGC
TTACCTTCTCTCTCCTTCAACTAAGCAAAAAATATACTACTTTATTTCTTATAGCCAGCT
GACTCAACTCTATTGTACTTACTCTTAGTCTATGTTTACTTTTTTTGCAACTCAAGCCTT
GTGTAATATATATGTCCCTTGGACCTTCAATAAAGATAAGTTACTTTTCTAACATGGTAT
CTATAAAACGGGACAAAAACCTATTTCGTGACACTTCCCTAAAAACATTAAATAGATACA
GAAGGTCTCACCACCAATAGGACCCACACCGATCAAAAGCATGGGGAATCTTGTTAGTAC
ACATCAGATTAGGTGCACACATGACATCTCGGCCTTGTTGTAAAATTTGTGCAATTGTTT
GAGCAGCAAACCTTGGTTCTGCACCTTAAGGTTTATCACACCCAAACCGCCCCTATCCTT
AGGTCGACAGACTAAATCCCACGCCGCAAGCGAGTTCCTTTTGATACCATCATTCGATTT
TTTCTACCATAGGCAGCATCTTTGTAACTTGTGTGGGCAAACTCGATTTACCTCTTGGAT
AGTTCTTGTTGTGCGTTTTGAATCATATGTTCCATGAAAATTTTGTTATTCAAGATGTGA
TCGTTACTCTAAAATTGGAATGAAGACAAGGGTTTAAGATTTCTACTTGGCTAAGCTCTT
AACACAAGTAAGCGAAATTGATCATATACCATTATTTGAAAGATTAACTTACACAAAGAG
AGAGAGAGGTAGGGAAGGAGAGAGAAAGAGATGTATCTATGTGTACTAATTTTTTTGCTT
GTTCATTTCTGTCTTAGATGTCAGTTGTCTTTAATTCATGTACATAGAAGTAATGTGTTA
TGATTAAACACCATTTATCCATGTCGTCAAACATAATCAAAATTTAAAGTGTGGGTGTGG
AAGATGTGACGATTTGAGTCGGATGCTCCATTATTAATGATGGTTAGCTTTGAAGAAGAA
GACAAAGAAGCGGCATGAGGAGGAGGGAGAGAGCGACATACCCCGAGAAAACAACAATTG
TTCTTGATGTGAAGGAGGAGACACTTACCCAAAAATACGACAATTTCACTTGATGTACAT
AAAAATGCTAACGATATATATTAGACACAATTGATTTTGAACCACTAGACTAAGTATGTC
CATGGGCAATTATTTAGAAACATCTATACATGTGAAATTTGATACATATATTCATAGGTG
TAGTTGGAAAAAAATTATAAGCTCATGACAACGCAAGGACATTCTACTAGTTGTATATAA
AATTCGTGCCTTTTTCTTGATAGAATAACTTTTTATTTAATTTGTTATTGTCATATCTGG
TGATACAGCGGCACTGATTTGTCGTGCATGGCCAATAACTCTAGACTTACGAACAAAGCT
CGTTGGATCACATTACAAGATCTCATACAGTTCCACGCGCGGCACAATTCTTGGAGGCAG
CTTCACCAATCATCATCTTCTCCGTCCCCCGTGCCGGCGGCCGGGGCCTGCAGCTGGACG
AAGTCCTCCTTGCCGAGGCACGACTCCGGGAGGACGTCCCCGGCGTGCTTCCCGAACGCC
TGGTAGCAGTAGGCGGACGTGCTCCCCCCGCCGGCCGCCTTCAGGCTCACCCCGTCCAGA
TACAGGCGCCTGCACGGCATGGCGTCGCTGCACGCGAACGTCACCGCCCGCTCCGTCGCC
GACGTGCCGGCGATGTCGATGTACTTGATCCTATCCACCGCCGCCGCGCTCCCGTTCTGC
ACGGCAATCCCAACACAAATTCAGAGATCGTGCACGGTGTTAATTATATCGTGAAATGCA
TCGTCGGACTCAGACAAGGCGACCGGCCGGCGAGCTGATCGTACCGGGGTTCCACGGCGA
GTTCCCCGGTTGGAGGCGGAGCGGTTCTGGTCGATGCTGATGGGGTTGGCCACGTTCCTC
ATCATGACGTGCTCGAACTTCACCTTGCGCACGAAGCCGCGGCCGTTCTGAATGAATTAA
TGAAAGCCAAAACCACAGCACGAAAGATGACGATGATGAAAAAGAAAACGATGTCACTCA
CACCTCACATAACATCTTTTATGAAAGGAAATGGTGCTATTACCTCGTAGATGCTTAGGC
CGTTCTTGGTGTTGGCGATGAACATAGTGTCCGTCTTGATCTTGTGTATCCTGTGATCAC
TTTGGTTCTGGCTCAAGCCCCCAATGCTGACCATGGAGAAGAAGATGAAACATTCAGATT
AAGATTTGACGAAGGTTTCGTCTATATACATCCATTTCAACGACAGGTAATATGGATCGG
ACAAAGTATTATTCGTTAAGATTGCACGTTAATTACCTTATGCCGAGGCCAGGTCCGCAC
GAGATGGCTTTCAGCTTGATATCCGAGGAGTCGCCCACGATCGACACGCAGTCACCACCT
AATATAAAAACGACAGGCAAACAGTTAGAAACGCCAGCAAAATTTCGCCTGCCAGAAGAA
ATTTTGGTTGACAACCAATGCAACGTACGTACCTACGGAGAAGAGATCGTGCTTGATGTG
CACGTCGGTGGAGCCGGCGACGAGGACGCCGACGGTGGCGGGGCTGTGCTCCGGCGAGGT
CACCCTGAGGTAGCTGGCCTCGACGCCGTGGCAGCGGGTGAAGGCCAGGTGCTGCCGCTG
GGCGTTCTGCACCGTGATGCCCTTCACGCTGACGTCCCGGCAGTCCTCGAAGTGGAGCGC
CATGGGTGCGACCTCGTGCTGGCGGTGCGAGGTGCAGTTCTCGTCCTCGCAGGTCCCCGC
CCACCATTGCTGGCCCCGCCCGTCGACGATGCCGCCGCCGCTCAGCGACAGGTCGCCCAC
GCCCCGGAAGTGGAGCCACCTGCCCTGGTCGCCGTCCGACCACTCTTCCGGGCTCTCCGG
CGCGATGATGTTCCCCGAAATCTGACGACGCACACATTACTATTAGGTTGGAGTAATTAA
TAGCTGTGAGTCTGTGACTGATGTGGTAGAGGAGTAGGAGGAGGGAGGAAGAAGAAGAAG
AATACCAGGAGGTTGATCTCGTCGCGGCAGGGGCCGGCGAGCGTGACGGGCCAGATCTGG
TAGGACTTGCCGACGGGGACGTTGAGGTAGGTGTGTCCGCCGGTGGCGCACGCCGCCTTC
CACGCGTCGACCAATGCCTGATGAAGAAACAAAAGAGAGGGTCAAGCCTCAAGGGAACGC
CCCCGTGCCGGTGCCGCCGCCCGACATGGCTCGCGACATGGCGTACGTACGTGGGTGTCG
TTGGCAATGCCGTCCCCGACGGCGCCGAAGTCGTCGAGCGAGAGCAGCACGTGGGCCTCG
ACGGCGCCCGGCAGCAGGAGGGCCGCGGCGGCGCCGGCGAGAGCCGCCAGCAGGAGCGTC
GTCCTTGCACGAAGCGCCATGCAGGCAGGTCAGCTAGCTACCTCGCTCGGCGTGGCTGCC
ACTGCTCAGCCACGGCGCGAGTTCACAGTCGGGTGAGTGTGCGGCAACGCCGGCGGGGGG
ATGATAAAGGGGCACGGCAAGCACGGCGCTGCACGATCGAGCACGAAAGCGAAGCAAGAT
GCGGATCTGCGCGCGGGTGGAGGGATCGGGCATCTCATGTCTCGCCGGTGCACGATCGAC
CTGCAACCTTGCATTTGCCTGAGCCTGAACCACGTGCTGGTGGCTTCTCTCCTGGCGATC
TGTTTGACTTTGTGGATAGACGATCTTGGCATTAAACCGCAGCTGGATACTCAGCTTCCA
TGATAATGTGATGAAGGAGAAGAAGAAGCACGATCTAGCCATGCGTTTGGGCATCATGCA
TGCATGATCCACGGATCATGCAACGGGCTCTTCGTTTTTGTTTGTTTATTATTAGTGGCC
GGGAGACCTTAATTAGGCCACCCACCCTCAATGCACACTGTCATATCATAAGAGCATCTC
CAACAGGCGCGCTTCGCGCCGCGCCTAAAAAACAAGTTTGCAGCGCGTTGGACGACTGGT
TTTACGCGTCGCGCAGCGCTGGCTCCAGCAGCCGCGCTGGTTTGCAGCGCGCGCGCTCCG
CTCCCGCCGCGCGC