Contig Data
morexGenes
Links



Map Locations of contig_128279 (4445 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_128279

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_3162 2 1775 bp MLOC_3162.1 Available Available LOC_Os04g52880.1, FRAME:-2, EVALUE:2e-18, 13104.m05433 protein expressed protein





CDS Structure of MLOC_3162






Contig Sequence (4445 bp)

>contig_128279 4445 assembly3_WGSMorex_rbca.fasta
GACGGCGACGACGACGACACCGACGGCCAGTGAAGACGGCGACGGCAACGACGGACTTTT
TTTATGTTAATTATGTCAAACTGTGCCGTTTTGTGGCCGTGAAAACTGGACCGTTTTTAA
TGTTAATGTTATTATGTTTTAAAGCTTTTTAACTGCGTTTATTTATTTTTAATTAAGTTT
TATTTTTATTTTTTAATCAAGTCCAACACGAATATGATTTGGGATACGGTCGCGCAGTGG
ACGCACGCACGAGCCAACAAACAAAGAGGACATGAACGAATTCATTACCGTCTTAAACGG
ACAAAATCCGATCAAACAAAACGTTGGTTTGGGTCCTGCGGTAGAGTTGGCCTTAGTTCG
CGACGCGGCACTACACGCCCGTGGCGTCCGTCCGTCGGCGCCACAGAAACCGGACCCGCA
GGGCGCAGAGAATTCACAAGCAGTAGGAACACCTGCACTTTGGTCGGCGCTGATTCACCC
CCCACCGCCTGCTCTCCCGTTCCCACTTCGTTACTACTCGTCGAGGACCGCGCCTCAGGT
GACCACGGAGACTGCCCGGCACAGCCCAGTTGACAGACAGGTCTGCTACAGCTCTGCGAC
TGCGAGCGAGCAGCTCCGTCTCCATTTCTGTCGGCTCCACACCCCACGGGCGGCGGCGAT
TGAAACAGTACTACTACTAATCGCACCTCTGCGCTGCCCGCCATGTTCCACGGCCGGAAA
ACGCCGTCCAACATTTGTCACGTTCCCACTGCCCACACCACAAGCTTACAAATGGTACTC
ACTGCAAACATATAATTGCTTGGAATGTACTCCTACGTACTAACATCCTTCAGTCGGCTT
AGTTTCTCCAACTATTAGTGGAGCAGGTGCTCATGAACCAACCACCAAGAACACCAAAGC
GCTGATGAATTCCTACCGAAATTCTCCAAGGTCTAAACATCACAGTACTAGTAGTAACAT
GCATGCCAATGAAGCGTTATTTTTATGTTACAGCGTGCCGCTCCGTAGCTCCCCAAATCT
CCATCACACACACACGCACGAACAGCGGAAGAACGGAAGGAAGAAATCATCATCAAACTA
AACAGACAATTAACTAAACGCGAATCACGACGCTAACGAACTGACGAGCAGCCCCTAATC
AAACCAAGCCGGGCTCGTGGCCGGTTTAGCCGAGCTGGACCTCGGCCTCGCGCCTCTCGC
CGCGCCTGGCGCGCACCACGAAGGCGACGGCGACTGCCACGCCGACGACGGCCAGTGCCG
CGACGCCGCAGGCCACACCGGCGGCCACGGCCACGGATCTGCGCGGCGGGGACTGACGTG
CGCTGGTGTTGGTGGTGGTGGGCATCGCCGAGGCCGCCTCCGGCTTGGCGGCCTTGGAGT
TGTCCAGCGCCTCCGGGAGCACGGCGGCCTCGGGCTTGGCGCCGAAGAAGGAGGCCATCT
CCGGCGTCGCCTCCGTCTTCCCCTCGTTGCCGAAGTCCTCCAGCCCGTGGGACTCCGACC
CGACGGCCAGCAGCGCCGCCACGCAGAGCGCCACGAGCAGATCCCGCCGGATGGACGCCA
TTGCTTCGGTCGCCGATCGAGCTGCCGTTGCGAGAATCAACAGTCAGTACGTAGCTACTA
CTAGAAACACCTTAAATAGCAAACTGTTGCTACGATCTTGAGCTGCTCTCTCTGGACCGA
ACGAACTGCACGGTGCTGGTACGTATATATTTGGAGAAATGCGGAACGATCATGTGTGTC
GATTCACCAAATGGCCGGACAAAAAGAGCTAAAAGCAACCAAAGAAGCAGAGGAAGAGAA
AGTCACATGCACCGACAGATCTCAGTGTCAATCAACGACGAGCAGCTAGCCAGAGCATGT
TCTTTCCGCAGCAGCAGACCGTACTTAGTAAACAAAACAAGTGCAGATTTGAGATTTCCA
CAAAGGAAAAGCTCAACGCGAGGATCGGAGGAGATTTCCTCGCTAGCTTTGCGCAGGAAC
GTACCTCGGGAGCTTCACGAAAGGATAGTGTGTGTGCGCGCGACGGAGAGAGGAGATCGA
AATAGCACTTGTGACTTGTGAGAGCTCTTGAAGATTCCCGGTATATATAAGAGCTAGCTA
GTCTCGTTCTTTGGTTAGCACGAGTATCGGAGTATGTGTGGAGAGCGAGAGGCTCGTGAC
GTGAGTGAGTGAGCGAGTGAGAACCCTATCTAATCAACCCATCTCTCACTCACTCACGGC
CATGCACGATGCACGTAGTAGATGTGGTGTGGGGCTCGTCGTTATTTGGGGTGGTGGAGT
GAGTGTGAAGCTATTATGATTTTTTGCCCATTGCCCCGTGCCTGCGGGAAAACAAAGGGT
GAAGAGAGAGAGAGAGGGGAGGGTGGCCTCCCCCACCATTAGGTAGGCAGGCATGTGATG
TGAGCCTCTACTTGGTTTACTAACCACTCTGTCGGCTTGCTTCGATCCACTATTAGCAGA
GCAGAGTGCTAGTCTCGTATACATATAGTACACCACTACTGCTGCTAATCTAAATCCACC
CGTGGCCAGATTCTGTGCTGCATGCGGTTACTGTGCCCCGTTGTACTCTTCCTCGGTCGC
GTAGGGGTCGTCCCCCGGTTTATTCCATCCCCGCTTCACGAGCCGCGCTTCACGGGCAAG
CAGGCGATCCACCCTCGTGCAGCGAGCGCAGTCTCCGGTAACCACAACCACAATTAGCTG
ATGCGTCGTCCGCTTCATCACAGTACTGCTACGGCATCATCACGGCGTCGAGTTAGGTCA
AATCATGCGACCTATCAGTCCTTCACGGGCAGAGCCGTCCTCGAGGCCTCCTGGAGAGAT
CGACTAGCTAGCGCACATGCACCGTTGATGATCGTAACATCATTGGCCGGTGAACCGGAT
CGATCAGGGTGTTGTTTTAGGGGGGTGGTAATTAGCCTTGGATCGGCACGGCGAGGCGGA
GAATCTGATGAATAGTGTAGTAAGTAGGCCTGGTCCAGTGTCCACTGCTAGCTAGAGGTA
GCACGTACTAGTAGAGTAGTACGTAGTCGATCCATGGATCCAGCGGGCGACCTGGCAGGA
CATATGGCGCCGAGTTCATTGGCCGGGCACGCCCTGCATGGGCATGCTGGGGCAGAGCGG
TTAGTTGGCAACCCTTGTACACTACTCCCACCTAACCCAATAAAACCATAAAGGTCATCA
TCACCAACAAAAGGAGCCTCATCATATGATGCATCATGCGTCAACCAGGATAATTGGGCA
CACCTACAGCGGCCGTGGTAAGTGAAGCAGTGCACCAGTATCCGTCTCATTATTCGAGGA
GTGAACGGATCATGTCGTTCATGTAGTACACATGACAGTGTAGACGATCTCAGGAGCACA
GTGAATTTGCAGGCTTCTGAAACGCTCTTGGACTGAAGATCAACACTCACAAACTAACAC
TGGGCGCTAGATATATGCAGGAGAAGGCAGCGCCCTTCGCGCGTGTGTTGTTATCCTGTC
TCATCAGAAGCGAGGAGGACCGACGGACCACGAAGTTTCCTTGTCGATCAACCGGCAATC
TAATCTACCCCTGACTGACAGCACACTCAAGAGTCAAGAGCAAGTGTGCTGTATAAACCT
TCGGCTTTGGCCGCGCGTGCATGCTCTTTTTGCGGCGAGGCAACACCTGTCTGTACGGGA
ATCTGGACGCGATCGGCGTTGGTGTGCAAGCGCAAGGAACGGGCTTGCAGGTCCCCGCCC
GCCATGGTCCGTCCGTGACGGGTGTTGAGTGTTACTATGCTGTACCTCTTGCGCGTGGAG
GTGGTGTCAGATCCTCGGCCAGTGCGATGCGCTGGGTGATGAACAGTGAGGAAGAAACTC
GCGCTGTAGAGCACCATGCTCAGCTTGCCCCCTTGGACAATGTCGGCCCGGTTTAGCAAG
ATGACGCGGCCGGATTCACTGCGAATCCACCGAGATGGCTCTGAATATGACACGCTTGAC
AGTAGATTCAGAAGAAGCGACCTCGATGGATCGGTGCCCCGTTGAAATTGTCGGCTGTTC
CGTCGTCTCTTCTACAGTTCTACCCTGTGCAGAAGTGAACCGGCCATGGAGTTCTCTTCT
TCTCCACTCACGGCCGCCCGGCAACCCGCCCGTGACGGGACTGCCGACCAGTTTCTATGC
GCTCTTTTTTGGTGATGAACAACAACACCTGTCTGTACGGGGATCCGGACGTGGTACGTG
AGCTTCTTTTGCTTTTCTTTCTTTTTCATTGAGTAAGTAGGAAAAAGACATGGACGGGAC
GTGAGTGAGGCAACGGCGCAACGCTCACTGAGTGGGTTCGTCCCGGAACCCAGACTCCCC
CGGCCCGGCTGGCCGTGAGAGTGTTGTGCGTGGAGATGTATGTCAGTGTGCACGATGGCC
GTGTTTGGATCCCGCTGCTAGAGCTAGTTGGAGCTGGATTAACCCTCAAAGTATCCAAAC
AGCTG