morexGenes - Barley RNA-seq Database

Contig contig_127738
Source Contig contig_127738
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_127738 (9506 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_127738

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3086	1	893 bp	MLOC_3086.1	Available	Available	None
MLOC_3087	7	2862 bp	MLOC_3087.1	Available	Available	LOC_Os04g32370.1, FRAME:-1, EVALUE:0.0, 13104.m03100 protein hydroxyproline-rich glycoprotein family protein, putative, expressed
CDS Structure of MLOC_3086

CDS Structure of MLOC_3087

Contig Sequence (9506 bp)

>contig_127738 9506 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGCTGTTTTTCGTATCACTGACAGTAGCCCTCGACCTTGCCAGCTGGTGATG
ATTCCGAGGAGACACACCATATTGATGGGCCAAAAACCCTTTGATGGGTCATCGTCAAAC
TATGGGCACAGAAACCGCAGATGAGCCTCGACCAAGATGGGCCCCAAAGTGGAATTATGA
GGGCTCTACCCCATCAGCCGATCACGCGAGCAATGGAGGCGAGCCCAACCATTAACCACG
AGGCCATCGCTTGTGCCTTCCTGCCTATAAAGAGCGAGGCTTCACACTGTCTGACCGCAG
CCAAAGCCTCTCCCGCCTGTGAGGTCACTTCAAAAAGGAAGAAGAGCCCATTGCACAAAT
TCTAGTAGAGGATCACAATTATGGTTGTCCAAATCCTAGTTGTAATCCATGTTGAACTCT
AATAGGAAAACCATCCATTGTCGCGGTGGAGAAGCAAGAGGTCTTGCAGCCAATGATAAA
CGGGTCACACATGTGATTTCTTCCTTGTCAATCCACTCCCTCCCTTCTTTTACAGGATGT
GTATAGCATATCTCCTGGCTTCACAGTTCTACAACTCCAAGCTTGTTTCACCTAACCATT
TCTCCTCTTTTCTGTTGTGCGGTATCCCGATTGCCTTTTTTCTCTCTATTTGTTAAGCCT
TGGGTCCACCATACAGAAAACAAAAATTATCACGTTAGCAGCACTAATCCATGTTTATTT
CTCTGTTTTGGTTGTAGAATGTTGCTACCATACCACACAAAGCAACTGATAAAAAAAACA
GACTGTTGCACCAGAAGAAACTCAAAGGCGTTGCAGTGGCTCCCTCAGCTGCGTGGTCTC
CTTCTCGGGAAGATCAATGTTGATGCTCGATTCGATCCTGCTACCCATGAGACAGACGTT
AGGTGTGGTGCTGCACAACTGTAGAGGTGAAGTGTTGCTAGCAGCGTCTGTTCTGGGCGA
TAGCAGTCAAAGTGCCGAAGTGACTGAGAGCCTGGCATGAATGGAAGGGACAAGACCGTC
TCTTTTTTTTGTACACGATACAAAGGCAGGCAAGACAGTTTTCTGAACTTGCTGACATGC
ATTGCATCCTGGAGTCGAACTGCTCCAATGTCGCCCGCTCGTTGATTCAAGGCAGTCAGA
ATAGGTCGGCATGCTTCCGGTACCAAGAGTGGAGGCTCTCTTCGCGCTTCATAGATGTCC
GCTTTCAGCATGTCCCGAATCAAGGCTTGGGGCATAAAGATTCCACTGATCCGTCAAAGG
GGTCCCAACCCCTGGATAGGGTAATACATCTAAGAAATTATTTCATCCAACGTACCCCCC
GGATGCGGGAATAGCAACATGAACTAAATGTCATGTCCAAGCCAAAGAACTTACCTGGGG
GGTTTGGATGTTGGATGCACCTCCCCTTATTTTTCAGCTCCTTTTGAAGGATTGTAAGGA
TAATCCTACCAATTAATGGAAGTCCTTTGATTCACATTTTTTTGGCTCAAAGCTATACCT
AACCTTTGACTCACAACCCCCAATAGAAGACTTTGAATGGAAACGACGCGTCCCATTTCT
AGTCTAGCTCCATCATGTGCTATTTTTTTTTAAAAAAAAACACGAATTCAGCTCAGGACG
AGCGGACCATTAGTACTATGTTAGGAGAGCAACAAATCATTATCATGTATTTATAATTAG
CACAAATACAGCTTTGATATAATTATGTCAGCACAGATTTATTTTTAGTAGACTGCATAG
TTGTGAAGTGAAGTTCTTAGAAAACTGCAAAATATATCCGCTGATTAAAAGAACAATATG
TTAATCATTCAAGTTTTATATCATCCCGCTCTCGGAAAAATGGAATCTCCGTGCAAACAA
GGACAATGGTGGACAGATACACCTAAATCCAATAAATACTTCAGATATGCAAGCCATGGA
GTAAAAAAATCCAATAAGTAGGCAAATAAATACGCCAAGGATAGAAATCTTTCATAATAA
GTGAATGAAGGTAAAATATTGCTATCTTTATTTCACCCTTTTGTTTCACAAAATACACCA
AAGACTATTGAAGAAAACCAAGAATGCAAACTACTTACGTACAAAATTGCCTACAATTAT
AAACAGGTTTGGATGTGTGAGTGCTCACGAGGTTTCTGCAATCAAAGGATAGAATATAGT
TAGACATGGCATTTTACATTATGTAGTAGCATTTGCGCAGTAAAGATTGAATATATATGA
ATATTGGAATCTTGCAAAAAGATAACGAGTGGATTGCATTTTATTCACATGTGAATTATA
GTACTGCCACCGTCCCATATAATTGTCGCTCAAACAGATGTATTTAAATGTATTTCAGTG
CTAGATACATCCGTTTGAGCGACAATTAATATGTGATGGAGGGAGTATGATCTAGATACT
TTCCCCAAAAGTACTCATAATGTCATGACCAAAACCAATGAAACCATTGAAAAGAGCAGA
TATCTAAAAATGGAAAGCATATCACAATGAGATAATCGAAAACAATAATGGAGTAAAACC
AACACTGAAGGCATAGTTCAGAACATAAATCTATGGTGAGGTTTAAACATAAAATTATTA
TTTACAGATAAATTTGCGTGAAACCAATTATTTAGCAGTAGAAACTTACCCTTTATCCTT
CTGGTGTCTATAGTTGTTTCTGCTATTGATTTGCGTGAAACATCTGCCAAAGATATAGGT
GTTAGTGGGGGCGAGGAAACTTCGCTGCTCTCTCTGCTATGCCTAGACTCCAACAACTTA
TTCACAGTAATAATAGGTGTTCTTTGGCTATTTGAAGGTATAGAATAGCTGCGAGTCATG
GCAGCAGGTGGTCGTGGAAGCGGTGATGCTGTATTTGACGGTGGGGAGGCACGGGTTGGT
ACATTAGGCATTTGCCGCCTTGATATCAAAGGACCAGAATATCCAACCAGACCAGGTCGG
AGAGTGTCTAAAGGTGCAGGAGGCCTAGGCAGCTCATGAAGCTCACTAATTCTGGGGGAT
GTTGTTGGCAGTGAAGTTATCCTAGGGACTTTTGGAGCCACAGATGGAAGAGAACCTGGT
CCATGTGATTTTGTTGACATAACACGAGGAGGATAGTTTACTGATGCTCTGTGACCAGCA
GCGGAAAACAAGGGTTTGCTTAACCCTGCTTTACTTGGAATTGGGCCAGAAAAAGATTCC
CTCTTCATTTTCTTTGAATCTGAAGTGGAGTAGGAATAAACTAATGGTGATGATCTCCTC
TCAGTACTTGATGGCATCTTAACAGGCCCGCTGTACAAGGAGCTCGGCTTATAATCTTTC
ACAAGCGGAGAGGAATGCCACAAATTTGCTGCCACATGTGGTTTACTCTCTGATTTATCT
GAATGAGGTGATCTGTTGGTGCCTGCTGAAGTGGAGTTTTTATCATCATCTGGTGTCGGG
AGTTTGTAGGAATAATTTGTTCTACTTGAATGTAGTGGGCTGGAGAACATTGGAGAATTC
AACTTGCGAAGCCTCACAGATGGATCAAGCACATTATCAGCAAAAATTGGTGCTGATTGA
GTAATAAACTCAGGCTTCATTCGAGGAGCTGCAAAATCTGTCTCTATTTGTTTGGCTTGT
TCCTGTAAGTGAACAAATGACAATTAGAAGAACTTTAGAACATGCTCAAGATGCTGCATC
GTCAGACTTAAATAACAAGAGAGCAGGAGTATAATAATAGTAATAAGAAAACAAACAAGG
ACTGGAACAAGTGAAGGAAGCAAGGACCAGAAACAAATCCTAATCTGATTATCACACTGT
TATTTAAACCCTATATAGCAAGAAAGTACAGATTAGTGTGCTTCATCGAGTGTATGGAGT
GACATTTTGTACAGCTATAACTAATAGTTCCCGGTATAGACACACACCACTGACAGGAAA
AATGACGGTAATCCGTAGGCTAAAAGTAGATGATGATAGTCAGCTTTGAGCAGGTGGTCT
ATATAGAATATTTTGAGGAGTCTATATCAGAAATATTTATCACCAGCAAGTGTAAATTTA
CAAACTGAACGTCACTTCAACCAAAATCTCAATGCCCCAAAACTCTCATATCAAAAAAAG
AAGGAAAAAGAACTGATATGGCAGTTAGCTTGATATGGAAACAGATCCACTGCAGGTTAA
CCTAGACTACCATGTGGCCGCAGAACATACCATTGCTACACGTTTCCTTAAGAGAATGTT
TGTAATCAGCATGTAACTCGTTGACAATGGAATGGCAAGGGTAGCCTGACTAGAAGTTGA
AGGATTACCTGCTCATGTTCCTTCAGAGGTTTAGTGGGACTCTCCATATTAGACTGATCC
AACTACACACAAAACAAATGGTGTTTAGAATAATAGAAAATGTAGATAGGACAGGTATTT
TAACATTCTTTGGTTAAAACATGGGAATGGAAAGTCTGGGTGAGCACTGTGATCCATCTG
CCCAGGAATGGAATTGAGCTGTGCTGCCGTATATACTCGGGGATCACCCAGCCAGGTATG
TGGGATGGCACATAAAAGGAGCACAAGAACGTTAGCTAGAAAGGACAGACTACATCGGAA
GTATCGTGTTCCTCTCATTTGGCTCCTCTGCTTCGTATCTCTGATTCTGCTCTCCCGCAA
ATTCACCTCAGTTAGCCCCAATTTACTACCAAATATCAATGCGGTTTGTAACCAGCTAGG
TGGACCATAACAGCAACAATTTTTCAAACCAAAATAGACAAGTCGTTGATATTTAGCGCA
AAAGTAGTGTTTAATTTGCTGAACGTTGCCAGGGAATATAGAAATGGAAATTCAACCAAT
AGGCACTACTAACTGACACTGAAGAAACATAAACTGAGTAGACTATGTGGTCACAACGAA
CTTGAGTATTGATCAACACAGATAAATTTCATACTGAATACTGATATAACACTAAGGGGT
ACATGAGTCAAATAACAATTGAATGGACAATTTGGGAAGAGGAGAGCTTACATCCATTGA
ACTTCTGGAAGCAGGAAAGTTTATCCCGTAGTCAAAACTCAACTCACTGCCCTCACTGTG
ATTGTCCTGGTAAGAGCTGTAATCATCATTATCAGTGTCATCATCTAGTCCACTGAACTG
ATAATCAATGTGCTGCTTCTCAGCAACTGCTTTTACATGAGGTTCTAGCGCCTCTAGATA
CTTCAAGCCTCTCCTGAAAAAACTCAACTGAAAGTTCAAACAATTATGAGATGGTTAATA
GTGTATACCATTGTAGGGATCCATATTAAATATTAATAACTCCTGTGAAGAAGAGTTAAC
GTACCTGAGCAGCATGATGGCGAGCAGCCTGTGTCAAAATACTTAAGAATTGACCTTGCT
TCAATGATTTCAAGCGAAATATGAATAATGTTGCATCTTCTTGGTACTCGAGAAAGGATG
CTTGCAATTGTTCTGGGGAGAATGTTTCAGTTTTGGGATTCCTTGATCGTCCTTTATCTT
TATAGGCTGACCGCATGGTTTCATATTCCTCTCTGAAGCCAAAAAAACATTTTTCAGAAC
TTGGAGAGAGAAAAGGTAAATGTGTTAAATTCAAGGTAAATTTGTACCTTCTCTGATCAC
AGTTGTCCTTCATTTCCTGTGTTAGTAAGAATCAAATGAAAGGGACGCGTGTCATGGTTT
CATAAATTGAAGTATAAAAGGAATTCAATTAGTTAGTTAGTATTCAGAGATGATGATAAC
TACAACACAAACACTAAATTGGAATGACATTACAAAACGTGATGGTAGTAATTAATTGTA
TTAATTAAGTTGAGACAACCACAGTCAAAAAGATCAAACCTCTACAACTTGTAGCTCCTT
GAGAAGAGACTCTGAAGGGTTTGTGATTGTATTAATGATATTTGTGCGCTGAAAAATAAC
AATTACAGGTCAGAGTATTACAGTACATGGAAATTTACATAGGTAGAAAGAACCTGACAG
TATGGCAACTTCCAAGACTGTTTCAGTTCAATGTTACTAAGGTAGAAAGAAAATTTACAT
AGTTATCCACAAACTTTTGTAGTTCAAATTGAGCCTTTCCTAGCATCATCAGCACCCTGC
CTGCAGGTAAAAGACCACATGAATAACGCAAGAGGACCACATACTTCTATGACTAAGGAA
GTAGACCTCCAAAACAAACAACACAAGAATTTCGCTTTCGATATTCACTGAAATCCGACT
ATGACCTTGTTCCATAAGAAAACAAATGGACAGATCTAGACTAATCACATGTATAGAAAA
AGTAGCATCAGGGGTATTTGTTTTTCATGGAGAATCTGGTAATTTTGACGAAGAAAAAAA
ATAGTAACATGAAAATATAACAGAGTTAGATTTAAATCAAGAGATATCCTTTGCTGCAAA
AACTGCTAAGAATAAGTCCAGGAATGCAAATTTCCATATAATATGTGCTTATACATCCAG
ACAACTCACCACTGTCATCATCATCGCAATCCAATGCAGTTTTCTCAAGTAAGCAAGTTC
CCATTTCTGCCATAGCTTCTGCAAACTCTGTGTACATTTGATCACAATGAATTATGGAAG
TACTATTACATGAGCACACAGTCTCTATTAGAGGTTACTTGGGCACTTTTATTTCGTTAA
AAATTACTATATCAAAGAAATGTTATAGCATACCATATACACTATTTGTTGTTGCAGCTG
CAGCCGAAAGCAAGCTATCATAACAAGTTCTCATTTCCTCCATCTCCTGCAAAATAAGAA
CCTCACATAAATTGGGTTACAGAAACTGTATTTCCACCAGATTGATAATCTTTGCACCTG
CTAATGACAGGTGAACTGTGAACACTATCAAATAGAAGGAAAAACCATTCTGACAGGAGT
TTGGCAGCCTGGATCCATTAGATCATGTTGTACAAAAGCTAAGGTTTAGCCCACTTCATA
TAGATATTTGAAGATTTGATCCTACCAAGGGCAGAGTAGACAGGCAAATAGTACTACATC
ATCAACAGCTTTGAGATCCACTTCTTGCTAACAACATGCCCCATCGGCAAATGAAAAATG
GCAGTCATGGCCTTCTAGCGAAACGAACCGGCATCCAAAAACAAACCCTCCTACATTTAA
CATTGGCATGCTTAAATCTTCTCCTTCATTATCGCCACGTGCAAAAGCGTCAACTTTTCA
TTCTTATACCAAAAAATCAAAAAGTAAAACTGAATGAAATAAAGGACTTCTTCAGATTAA
TCAGAGCACTGCACTCATCCCCCTTACTGCTCTACAACTCTAGCCATGACTAAAATCCCG
TAGTCCCTTTCAAGCATCTATCAACACTTCAGTCACTTTCATCTAAGTTGGACTGACTAC
ATTGCTGTTGAAATGGAAGATGCCGATATGACTCAGCAGCCAGTACTCCCTAAATATAAA
AGATTTTTTATACTAATCTTGAACATATATATAATCAGCAGCAAACACTAACATATCTTG
ATATATAAGAATCATCAGCCATGTTTATCGCATATAAAAAATTACTCCACTAATGACTTT
GAATTGCTGACCCAAGACTCGTTCCAGATAGCACCTTTCTCCAATAAAAGTTTCCTGCCA
TAGACTTTGACCAGCAGAGCCAAGCCACAAAAATCAAACGCGTGTAGCAGCCAGAATAAC
ACAAAAAAACAATCAGTTCTCACAAATTTCACAAACCATTGAAATAAAATATCGTTACAG
CGGTCGCATAGAACTGTTGCTTTGTTCATCCTCACGCGTAAAAGAAGAAAGGCAGACGAA
GAAAAAAAATGATCTCTCTATCCCTCGCTAGAGTTTAATTCCCTTCGATCTCACATAATC
GCTACGAGCAAAAAAATTTCAACGCAGCCAACAAGGACCGATACACACAAAAACTAAAGA
GAAACAGCCCGGCAATACCGCAATTTCTCGATCGGCCAAGCCTCGTGATCCAGTTTAAGC
GCATATTCCAAACCAGCAGCGCGTAATGATGCCAGGGGAAAAAAATCGTAGTGAGAGTAG
GGAGTCGGCGAAACCTGGGCGGCGTCGACGAGGTCGTCGAGCTTGGCGGGCGGCGGGCGT
TGGTCCTTCCTCTCCTTGTGGTGATGGGGGAGGGCGAGGCCCCGGAACTTGCGCAATGGC
GATTTCATCGTCGAATCCAGAAACTAGCGCCAATTCGTGCCCGGCGATGATTCGAAGAGG
GGAGAGGAGGGAGAAAGAGGAGGTTTGTTTCTAGTTTGACAAGATGGATTTCCGAAGACC
AGAAATGGAGGAGGGAGAATACGATGTCTTCCTTTATGGAGATGCTACTGGTGTTTTGGG
AACGGAAAATAATTGTAAACAATTTGGTCCATGTTTGACCTGACGCAACCAGTTTGACCA
AAAAAAGAGAGAATATCCCCACGCACACTAAATGGAAAGATGAGAACAAACTGTAAGGAC
GCGTTTTGGTATCCAGCGTACAGCCCGACCAGCCCGTTGGATGAAAAAAAAAAGTAAACA
TTTGTGACCGGTGCGTCGATCGAAGATTCACACCCTCCTTGCTTCTTCCGTTTTCAACAC
TGTGGCTGCGAGCAATGAAGACGCGCGGCCCTGACGAGGCTGTTTACTACCCCACATCGA
TGGGGAGCTGCGACGGCGAGCAGCCCCGGCGGCGACGGCGAGCTGCGAAGGCGAGCGGTG
ACAGCAACCGGCCTTGACGAATGGCGTTCAGCTCCGACGAGGTTGCGGTCTCCCCGTTCC
CGCGCGCACGACCACCTAATTTGACGGATGAGCTGCATAACTGCAACGGTGGGACACAAC
CACAAAACAGGGATGCTGAAACCAACATCGATTTTTGCTACATGTTTCAACTGCCATCAC
AATTTGCTACAACAGGCATTGCTATCTGCTACCACCGGTGTCACATTTTGCTACATGGCA
CATGGCTTCATGATTTTTGCTACAACCGGCAACGAATACATCCGACGACATGATTTGTTG
CAACGGCCACGACGAAGTTTGTGGTGGCGACGACGGGGTTGTGATTTTTGCTGCAACTAA
CAGCAGAAAAAGCTACCATTGATACGTCTCCAACGTATNNATAATTTTTTATTATTCCAT
GTTATTATATTATCTGTTTTGAATGTTTTATATGCATTAATATGCTATTTTAAATTATTT
TTAGGAGTAACCTATTAATCTAGAGCCTAGTGTCAGTTTCTGTTTTTTTCATATTCTTGA
GTATTGCAGATAAGGAATATTAAACAAGTTCAAACGAAATAAAATCTCTGGAATGATTTT
TTTTACCAGAAGAAACCTGCCAGACATGGAGAAGGGGGCAGGAGACCTGCCGGAAGACGA
CAAGCCTATAGGGCCCCGTGCACGTCTCCTAACCCTAATCTTCATCCTATAATTCCCAAA
TATTCCCCCAATGCGAGACACAGGCCAAAAAATACTTTTCCTCCGTCGAGAGCCTCTGTT
CTCGTGAGATCCAATCTTGAAGCCTTTTCCGGTAAACTGTCGGAGAGGGAATTGATCACG
AAGGGCATCTAAATCAACTCCATTGC