morexGenes - Barley RNA-seq Database

Contig contig_127683
Source Contig contig_127683
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_127683 (5797 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_127683

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3078	2	3435 bp	AK356320	Available	Available	None
CDS Structure of MLOC_3078

Contig Sequence (5797 bp)

>contig_127683 5797 assembly3_WGSMorex_rbca.fasta
TCATGAACAACATGACCGCACACTTGTCCGCAAACATCCGTGTAACCGCACTCATGCGCA
TCCGGGATCAACTTCCCGGTCAGTCACCCATCCTAGAACGACTTCAAGCCGAGCATGCTT
AACCTGGTAGTTCTATTCGAATGGGTTCCCGAAAAAGAAGGAATTCCTTATNNNNNNNNN
NNNNNNNNNNNCCCTAATAAGTCAGGCTATCACAATAATGATGTTGAGCAAGATTTGCGG
AGGTGCGCGTCGAAACATTCTTGCGTTACGTTCATTCCAAATGGCCCACCACACCAGCAT
GGAGATCGATGAAGTTCACGAGAGGAACAGAACATACCAAACATAATAAAAATACATTGA
GGTGTCTTGATCACCGAACAACCGCTACCATCGTCAATGAGTCGTCGGTGCGCCTCTGTC
GTTGCTCTCTATTGAAGTTGGCCTGACCTCGCCGATGACTGTTAGGAAGTCGTGCGCATG
CCCCTAAGGGCCAACGTCCTTGAGCGGTAGTCACTGATGGCGAACCCTTTAATCGATCGA
AAGCGACCAACACCAGATCTTGTTGTCGCTTACGTACGATGAGAAACCCTAACCTCGCTA
TCACAAGGAGATGACAGAAATCTACACCGAAGCTTCGTCGAACCCGTCCTCTCGGACGAA
CTCGAGGAGGATCAAAGTTCGGAAAACCAACTCGAAGATGAAGCGTCATCATCGGTCCAA
ATGTCGCCCCTGCGAGGACTAAAAACCCCTAACCTAATCTAATAGCTGAAAGCCAAGGAA
CCGGGATTTCCCTTGCCGCCACCGGTCCATGGGGTGGCGGACAAAAAGGAGGTGAATTCA
TGGGCTGACCGGCGGAGCCTAGAGGAGATGAGGTCTTCACCCTATGCGTCATTGAGGGAA
AAGAATTCAAATGGTTAAGTTCCTTGTGGTAGAACCAGCCCACCCTGTCCAAATTGTTTG
CATTTCCAATATTTATTATAGGCTCTTAGAAAATTTTAGTTCAATGGGAAATGATATCTG
TGGTGACTTCGTCAATTCCAAACTTTATTCATTTGGTCTCTTGGGTGTGCTCATATAAAC
AGGTTGTGCCTGTGTGTGTTCATAGGTATGTTTAATAAAAAAGAACATGGTCCCTTCATT
TCATAATGTAGTGCATCTAGAAATTTTTTTAAGTCAAATTTTGCAAAAGTTGACCAAATT
TATGGAGAAGACTATTTATATCTATCATACCAAATATATAAAATATGAAACTACTTGACT
CTAATGATAAATATTTGGCATTCGGGAAGAATTTTTTTTCTCTGCAAACTTGGTCAAGGT
TTGTTATATTTGACTTTTAAAAAATCTATATGCACTACGTTATGGTACAGATGGAGTATA
TTTTACTGCACTTGCCCATTATGACTTGTGTCGCAATATTATTCCACTGAAAAGCAGATT
TTATTCTGTATATCTTGAAAGTTGACCACCAAAATCTTTTGAAATCTCATCCGAAGGGAT
TGAGATGCCCAATCCTAAAATCGATCAATCAAAGCATCTAAACGGTATCTCTTGAAAAGG
AATAACGAATGTCAATGCGCATCCAATGGTCACGAGTAACAATCACAGCCAGTATATTGC
TTGAGGTTGCAATTTTAGGCATCAACTTGTATGTATAGTGCACTTGCGAGGACCATCAGA
TGCAATAATTCTAGTGCTTGTATCCAAGTTGCAGAAATACATCACATATTCGACAACAAC
TAAGGCACGAAACATCCATCAAAAGCAGAGACCGCTCCAGACTCCACAAACCTTTCAAAA
TGGCAAATATATGGCTATAAGAAATAGTAACACGCATGGATAATACAGGCCACAGGAGAC
GATAAAGTAGTTCAGTTGTTTATTTTACAGGTGGAAATTTCTACATTCCAAGTAGTAGAG
CAACTAATGCCTTGTTCTTCATGAAGCTACTTCTCATCAGGTCCTTACTGCCTACCCTAC
ACGACACCAAAATGAAGAGGCGTCAGTGATTAGCCACATAATAACAGTATTAGCAAGACT
ACAGACACAATTTTCCACAGGCATATTCCTCTGGAGAACAGCTGCTGCCAAATGAGTGTG
CAGAGAAATTGGAACAGACTAAGAATTTGTCATAGCTTGGGTTGATGTATGCGCCAGGAT
TTCCTTATAAATGATTGAATAATAATTAATATATGCTTGCACTTATATTTAACAACTCAG
CGGGTCCATTGTTCTCATGTTTTACCAAGCAGATGGGTCAAGCATTTAAGAACAAAAATT
TAGTCCACTTAGGAGACATGTTGAAACTGAAATCTAACAGTCAACATACAAACTCCAATC
CCTTTGTAGGCAAGCACTACAGGCATGATAAAGTAATATTCATAGGTTTTTTCGAAGTAC
TAGGTGGCACCATAATTATGTGATTTAAGCTTTATGGACCAAAAAAATCAACATTGATGG
ACTTCAATCCAATAGTTGTACACGGTGCCAGTAAAAGTCATATGACAATGCTTTTATACC
TGCCAGTTCCCTTGTCCTTCACCTGGGCCAGGATACTGATCGGAAGCCCCTTGTGAGTTA
TCTCCCCCATATGCAGGTGCTGCACCCTGTCTGTTGTCTCCACCATAAGCAGGACCCCCT
AGGTTACCTCCAGGATATCTCGATCCAGACGGTTGCCCATAAGCTGGCTTCCCGTAGGAT
CCAGGTGCAGGCGGTTGACCGTAGTTTCCAGGTGCAGGCGGTTGACCATAGTTTCCAGGT
GCAGGCGGTTGACCATAGTTTCCAGGTGCAGGCGGTTGACCATAGTTTCCAGGTGCAGAA
GGGCCACCAGGCCTGAGATCTCCTGCCTGTCCTTGCGAGAAACTCCTGCGCTCTTGTGGG
TTTTGGAAACCTTGACCGGCTTCATTTACACGCCCTTGGTACCCACCAGGCGCATTGTAA
CCTGAACGGTCGGCAGAATCATTCCTCCCATAACCTCTGCCATCTTGTCCAGCTTGTGTG
TAATTCTGCTGTGGAGCATGGCCTCTTACATCTTGCTGCGGACGGTACGCTTGGAAGTTT
CCTTGTGGTGGCGAGCTGTTCTGGTAATTTCCTTGGGGTGGAGCGCTGTTCTGGTAATTA
CCTTGCGATGGAGGACTGTTTTCGTAATTTCCACGATAGTTGCGGTTTCTGTCAGTCCTT
GACGGTTTGCTATACTGAACAGGTGGTGGTCTTGGAGTTATGACACCATTCTCATATTTG
TCTCCTGATGAAACCAATTCACACATACAGATAAGATCAGGGGCATATGAAGCTACTAAA
CGGTAATTTATGAACAAGAATAGAACAAACCTCCATACTCCTTTGTCTCTGGGTATAAAT
ATGAATCAGGCAAGATGAAAACAACTCCAGGCAATCCTGATCAAAATGCAAAGAAAGTAG
GTACTTAAATTATAGAATAGCAAAACATTTCAAACAGAATATAAGTCTAGGTATCACATC
CTCTCACCGCGAAATTTTTCTGACATTTCCTCAGTCATTACAGCTTGAAAACCAACATAT
GTTGTTGTACTAAGAGCATACATCCTCTTCTTAGCCTCCTCATAACTACAAGAGAACTCA
GAGATCAGCTAAATGTTGCAAATGCTATTATTTCATTGCTTACACATCAGTCAGAAGAAA
CATTAGCATTATAAATTGGGTTACGTTACGTGTCGGCCGGCGGATTATGAGAAAACATCC
ACCGTCTCGTTGGCCGTTGGATGTACACGGGAATAGCCATCCGATCTATCGTCCACGAGC
ACCACCTCCCTTTTGTAACAAGATCGATGTTGCAGAACAAGTCCTGCAACAGGATGCTTG
TTGAGAAAAAATTCTAAACCACTATTTATCTTTCGGAAACATGGTTTGTGTTGCAGAACT
TTTTTGCAACTGAGGTCTTGTTGCAGATAACGAGAAAACATCCGTCGCCTCGCTGGCCGT
TGCATGTAGACGGGAATAGCCATCCGATCTATTCGTCCACGAGCACCACCTCTCTTTTGC
AACAAGACCAGTGTTGCAGAACAAGTCCTGCAACAGGATGCTTGTTGCAAAATTTCTGAA
CCACTATTTATCTTTCGGAAACACGATCTGTGTTGCAGAACTTTTTTACAACTGAGGTCT
TGTTGCAGATTTTTTTCTTAAAACAGAGGTTTGCTGCGAAAAAAAGCTGTCTTTACTTTT
TAAAACATAGCTTATGTTATGGAAGAAAATTCTGCAACATTGGTGTTGTTGCAGAAAATT
TAAGGAGAGTCATGAGGAGTCAGGGGCACATGTCACACAAGACACGTGTCGTATGAGCGA
ATAGGGGTTGTGTTGCAGATTTTTTTTAATCTTCATCCTTTTATAACATAAATGATGTTG
CGGAAGGACTTTTGCAAGATGAGTGATGTTGCAGAAACTTTTTTTTTCATAAAGGATGAT
GTAACACGGTCCTTGTTTGAGAAGATGACCCGGGTAAGAAACGTGTTGACGGGATAAAGA
TAGTTGTGTGTTGTGCTCCATTGGGACACGCGTCATGCAGGGGAAGAGATGGATGAAAAT
AAAGATCCGGCGGTAGATTTAGAACGTTTCCCTTATAAATAAGGGCATGCCTTCACTAGA
TAACTTCAGAGCCATCAATATGATCAGTAACAGCTTCACTAGATAATTATACATCAGTCA
GAAGAAACATTAGCATCATAAATAAGGGCATGCCTTCACTAGATAATTTCAGAGCCATCA
ATTTGATAACAGCTTCAGTAGATAATTACACATCAGTCAGAAGAAACATTAGCATCGTAA
ATAACGGCATGCCTTCGCTAGATACTTTCAGAGCCATCAATTTGATAGGTAACAGCTTAA
CAAATTCTAGGCAAGAGCAATGACTTAACCTTTTAAGAGCAGAAACACAACCATCAAAAA
TAGGGAACCATTCGCTAACAATATTCATTGGTGTAGAAACAGACCATTCGCCAACAGTGG
CCATCAAATCAAATTCAATGAATAAGAAAATACTGCAGAAACCATAATAGATAAAGGATC
CTTGAACTTAAAAGTTCATTCAAAATACTAGATGTAGATCTCCTAATGACTCAAGGTATA
TATTTACCAAAACGTTGTGAAATATATACCATTGCCATCCTCCAAAATCAAATACTTCTA
TACTTCCCTTATAACCAGTTAACTACTATTCTAATTTCATACAGAAAGCAACAAATCTGA
CAGCTCAAATCAGCGAGTACACATTAGTTTGAGGTCAATCTCGAGGTGCTACTTTTAATA
TTTTCTGCTTAGTGGGCCACGTCCAGTTTAGTTATGGAGTGCCTTAACTAAAAAACCTGG
ATTAAATGTATGGTTGGATTGTGAAAAATGCATGCTGGTCCAATCAGGAAATTATAAATA
GCAGTGGAATTAGAATATCTTGAATACTTCAAATCACCACCCGTAAAAAGATGCCCCAGA
CAAAACGATGTAACTTGACATAAGTGTATCAAACTACATATTAACATTTAAGTTCAAAAT
TGTTGATGACATAAAAATAATTATATTTTTGTATCATTCACAACTAAACCACCGGAGCCA
TCGAGCAAAGGAAGTTTTCAAACATTATTATTATTCAACAAAAGTTGAACAAGGCACATT
ATTACAAAAATCAAACTCTGTTGACACAATTTAGATCCAGAGCCACCAAAATAAACATGA
CTGCCACCAACAAAGCAGCTCAACGATTCCAGCAATTGCAACTACAGATTAGTAGTATCG
TAACTGTTTGTTAATACACCCTCCGTCCCAAAATAAG