| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_127258
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_3036 |
1 |
1316 bp |
MLOC_3036.1 |
Available |
Available |
LOC_Os02g33550.1, FRAME:+2, EVALUE:2e-85, 13102.m03638 protein harpin-induced protein 1 domain containing protein, expressed |
CDS Structure of MLOC_3036
Contig Sequence (6102 bp)
>contig_127258 6102 assembly3_WGSMorex_rbca.fasta
GTAAAAAGATATAAAAGTGTAGGAAAGCATATAACAATGTCATCCAAAAGATCNNNNNNN
NNNNAGAAATTATAGATACGTTTGGCACATATCAACATGCGCATGTTCACGCAACGGCTT
AGGATGAAATCTCCTTGTGGTACATGCGAGGCGCTAGGATCCCTTTCGACCCAGGCTGAG
GGCTTCACTCATTTGTATTGTATTTTCTTCCTTTTATGGCATCCTTGCTTTGACGCTTTT
GCCCTCGGTCACCTTGTGTACTATGTTCCCCTTTGATATATGAATTTTGGCAGAGCAACT
ACCAACATTTCAAAAAATAAGCCAAACTGCACAAGCACTAGCACAAGCACCATCTCCGAC
GCTGCTGTGTCGGCTTCGTCGCGTGGCTCGTCGTGCCCCGTCAAGCCTTCATGACGAAAC
ATGGACATAAAAGTATGTCTGCTAGCCACAACCAAAACTAAAACAAGTTCCGTTTTAAAA
AGAAAAAAGTCCAAAACAAACCTTGAAGTTGTAGACGAAAGCTAAATGAAACCCTGAACT
TTGAATCCCTGAAATTGGCACTCCGAACTTGTAACCCCGGTCTATTTTGAACCCTATGCC
CGTTTGGCACACCGGGATTTTGGCAATACCACAATCCCGACCGGGATAACCTCCGAGGCT
GCTACTCTCATAGACAGAAATTGGGCTGGCCCACTAACAAAAAGAATTTATGAACTTTAA
AAAAAGTTCGCGCATTTTTAAAATTGTTCAGAAGTGAAAAATATTTATTTTCCTATTTTT
GTCACAAACTCTATGTCTTTTTTGTTTCAAATTTTTTTTGGGATTTTTTAGTTCTATTCG
TATTTATAAAAGATGTTCACAATTTCAGAAAAACCACGTTTGGCAAAAAACATTCAGAAC
TCCAACAGTTTTTCACATGCTATAAAAAATATTCAGATTTTCGAAATCGGTCCATGTTTT
TTAAATAATATTTCCGGATTGTTGGCTGTAGACTCAACTGGGCCGGCCCACCAGACATGA
AGCGAGTTTTTTCTTTACGCACGACGTAAAATCTTCCTTTCTTTTTATTAACGCGCTACG
CAATGATTCCAAAACAAAAATAACAACCATGGAGTCGAACTTGGGACCTGGCAGGGTTGA
TCTCATTCTGCTAGACATTACACCAGAGGACTATGACTAACATAATTAAAGATGCCGAAA
TATTTAAGTCGCACATACGATTAATAAAGACTGAAATGTATAACATGTATAAAGGACCCG
TACCACAAATATGTGGAGCCCTCCAAACAAATGTTTATACAATGTATAATAGTTCTCAGA
AAAAATACAATGTATAATAAAACTTGTGGGATTTGAAAAAAATCTTTCTTACATTCAGGA
AAATGTAAAATGTCAAGAATGTTCTCAAGTTTCAAGAAACGTGTTTGTGACATTTAAAAA
AGTGTGTACAATGTAAAAAGGTTGCGCCTTTTAAAAAAGTGTGCCATACCTTGAAAAGAA
TGTTCATCAATTTTATAAAATGTTTATTGTTATTTATAAAATATAAAATATGTAGTTGGA
AAAATATTACCATGTATTAATTTTTTTTATAAGATGTACTTTTAAAATGTACATAATGTG
TTGGAAAATATTGGAAGTTTATCAAAAAAAATATACATATGTGCGTTAAAAATTACATTG
GATACTGAAAAAAAAGTAAACATGTGTGGAAAATAAGAAAGAACATAAAAAATCAAAGAA
AAACAAAGCAGAGGGCGCGTGTGCGCAACTGCGCTAATAAGCCCAGCCCAATTCAGTAAA
TACCAGCTAAGTTCTCTCAAGGTTTAAAATAGATCAGGATCAGTGAGTTCGATGTGCTGA
TTTTAGGGATTTAAAGTTCAGGGTTTGGTTTAGGTTTTGTCTACAAGTTTAAGATTTATT
TTAGACTTTTTTCTTTCAAAAATTAAAAAAAAAAACTAATACAGCAGGAAATGCAGCAAA
TTACCATCTGGCTTAGGTTGCTCTTAACAAAAAAATAAAACCTTTACAATGGGGTCAGAA
ATAATTCAAAAGTTGATTACAAACACAGTCTGGCTTCGATGCAGGCGACATTGAGCATGT
GCCGCGAAGCTAAAGAAGAAAAAAGGTTCAATTGTATCAGAACAGGGTTGCCCCCTCCGG
CAGGGTGCCAGAACAGGGTTTCAGATGAGTTTTCTTCGAGGCAGAGGCTTGCGATGGCGG
AACGAAAGTTTTAGATTAACTTGCATAGGTTTCCGGATTTATAGAATTTTTCAGTATTGA
AATCACGTCAACCGGAGCCACGGATGGTCTCAAGCCATCAGGGCGCACCCAGGAGGCCTC
CTCTGATGATTCTTCGCTCCGGTATTTCTTATTTTCTCAGGAAAAATAATCAAAAAAATT
CAAACGATTCTGAAAAACTTTTATTTTCAAAAAAAAACAGCACCACGGTAATTCTACTGA
AAACAACATTAGTCCAATTAATTCTTATATGTAAAATACATCAAAGTCATATAAGTATAT
TATAAATATAGATAAATATTACTTACATAAGTATTTTATAAATTATCAATATGCTGGATA
CATATGATGGGCATCCCCTCGCCTTAATTCAATCAAACATGGTCAAGTCACATCAGCCCG
TAAACATACCTAAGAATTTACGTGGATGTAGCATCTCTCCTCGGAGACACACATTGTCCG
AAGTATCTTGACACTCGTGTGCATGATCAAGAAGGCTTGAGATAATCACCGGTGTTTCGC
ATAAACCGTACCGCGTAGCCAGATAATGTTGTTCCCCGTCGAAGTACTTGCCGATCGAAT
TACCAGAAGGTCGGTTGAGACGTTGCTTTCCTTGCGTCCACCCCATCCATACCAAGATCC
GACCAAAAACACTTTTACGCATGCAGTGCAGTACTGCACTCGTTAGCTATCATCTCCAGT
GATTTCTAAAGCCATTAACACGTACGTGCTCTGTTGGATAGCGTGGATCGCTCACTCACT
GAAGAGAGCAAGCTACACACCGCAGTACCCAAAGTAAAGAACAGAGAGTAGAGCGTAGAG
CCACGACCAGCAAAAAAAAGAAAGAGAAAAGAGAGAGAGCCATAAGCCAAACTGCACAAG
CACCATCTCCGGCGCTGCTGTGTCGGCTTCTTCGCGTGGCTCGTCGTCTACCTGGCGCTC
CGCCCCACCAAGCCTTCATGACCAAACGTGGACATAAAAGTATGTCTGCTAGCCACAACC
AAAACTAATACATGTTCCGTTTCAAAAAATAAAAAAACCAATACAGCAGGAAATGCAACA
AACTACCATCTGGCTTTGGTTGCTCTTAACAAAAAAATAAAACCTTTACAATGGGGTCAG
AAATAATTCAGAAGTTGATTACAAACACAGCCTGGCTTCGATGCCGGTGGCTCTGACCAT
GTGCCAAGCGAAGCTAAAGAACGGAAAAGGTTCAATGGTAGGTGGTATATGCATATCCAT
CAGCTACGGATGCCGCCTACCCTTAGCTAGAAAGGTTCGTGAAATATTCGTATATGCATA
AAGTTTCACCTAAATCCATATTTGCGTACTCAGTGGAAGCCGGTGACTCTCGCATGGGTT
TGCTCACGTTAAATATGAAGCAAATCGCGCTGGATAGAGGGGACATCGACTCGGGAGTTG
GAGAGCGGCGGTGGGTGTAGGGCTCTTGATTGCAGCTATGCATGATTTCATATGATGCGC
CGCACACCCTGGTTGTGTACTACATTCACGCCCATCCCCGCCAGAAGACAACAGCACCCG
AGCAGCAGCGGCCCATAACTTCGATTTTTTTTCTGCTAACTGTGTCATTCTAGAGCACGC
AATTTTACTACGTACTGTATTTTCTCTTTGACAATGACAGCCTCGCCACCTCAGCTAAAA
TATTGGCGGGAATCAGTCAGATCTGCCACCATTAGTCTGCTTCCTTATGGTTCCGTAAAT
AAAGATTGATGTCAACATAGCCTGATAAGGCGATCGAGCGGTGGTACACATGGCCTTGTC
AAACGCAACTGCATTGCTAAGTTTTGTTTTAACGAGTGCTTGATCAAACGGGACTCACTA
CATGATCACCAAGCTGCATCAAACAGGAGAATAAAGGAAGAATCTCAAAGCGCACGCGCA
TGCGGGCGCAAGTTACTCCCCGATCGAATTAGCAGAAGAATCTTCTTCGGTTGAGACGTT
GCTTTCCCTGGCCTCCACGCCCCATCTTCCTATACTTTTAAAGCCATTAACACCCACTGA
AGAGAGTAGCTAGCGAGCCACTGCACGCACACCCACCAGCCACCAGTCACACAGAGCACA
GCACAGAGAGCAGAGCCATGAGCAAGGAGAAGCACCACAGACACGAGCACCACCTCCGGC
GCTGCTGCGGCGGCTTCGCCGCGTGCCTCCTGGCGCTGGTCGTCGTCGTGGCATTCATTG
CGCTCGTCGTCTACCTTGCGCTCCGCCCCACCAAGCCTTCCTTCTACTTGCAGGACCTGC
AGCTCCGCTCCATCAACCTCGGGGATCCCTCCCTCTCAGCCACCGCGCAGGTCACGCTTG
CCTCCCGCAACCCCAATGACCGCGTCGGCATCTTCTACAGGCGCCTCGACGTCTTCGTCA
CCTACCGCGATGAGCCCGTCACCGTGCCGGTCTCCCTGCCGCCCATGTACCAGGGACACC
GGGACGTCACCATCTGGTCCCCCGTGCTGTCCGGGGAGTCCGTGCCCGTCGCCGGATACG
TCGCCGAGGCCATGAAGCAGGACATCGCCGCCGGGTACGTGTCGCTGCTGGTCAAGATCG
ACGGCCGCGTCAAGTGGAAGGTCGGGAGCTGGGTCTCCGGCAGCTACCACCTCTTCGTCA
GCTGCCCCGCCATGCTCGCCGCCGGCCCCGGTGGCATGCCGCTCGGGGGTGGCCTCAACG
GCACCGGGGGCGCCGTCGCGTCACTGAAATTCACGCAGCCGACAGGGTGCACCGTCGGCA
CGTGATAGAATGGACCGCGCATACGGTCGCATGTTCGTACTGTAAGTGGAAGAAACTACT
ACGTAGCAGGATACTTCTTCTCTTCGTGTCTCTAAACAATTTCTATTTATATATTGTAGT
AATATAAGTTGTCTAAAGCTCTTAATTTTTGTATGTCTCGTTAATCGGAGAATAAACTGT
GTTGATGTATGCATTTCAATTTTGGAATTCATAGATGCAATTCCTATTTTGTACTAGTAT
AAATGTAGATGTACGTTCTTAGAACATCTACAACCCAACTCCTCAAAGAATCCTTATACG
TCTAGGCTGGCGGTCCAATTAGTTACTGGTCATAACATCTTGACCCAATTGTACCTCTTT
ATATCTGTCATGGCTGGTCCTAATATTTTGGAGGGTTGGAGCGAAAATTAAACATGGGCT
CTTTAATATAAGTATCAAAAAACTAATGTATGCCTACATGAAATGTTATCAAAAAAGATT
TGAACAAAAAAAAAACTAATACCATGTCAAGTAATAATTTATAAATGTTATCTAAAAAAA
TCAAACATTCTTAGATTCCATCTACCAAAGATGTTCTCTATGAAAAGAGAACGAGAGACG
TATTTTATCTTAATTCTAGCGCTTAGAGTGTAATCTCCTCTTAACGAATCAGCCTCTAGA
CATGGCCATAGAGGTGCGGGATGGGGGACAAGAGCATCTCTAATAGACCCCGTATAAATG
GTTAAACCCGTAAAATTTTGCGTTTTAAAGTTTTAATCGTAAAAAGTGTGCAGAACAGAA
ACCGTAAAAATGGTTTAACCCGTAAATTTTCTAGGGGGCACGGTAAACCGCAACCCTTAT
TTTTGGAGGTTGGAAGGCTGATTCTAAGGAGGGCTTGTATACCGGTCAAACCTCGTTGGA
GCAAACACGCCGCCGCGGAGTTTGCCGGAATTCACCCTAAACTTGTCGGAATTCATCACT
TCACGCCGGAAAAGGCCGCTGGACGCCGCAATCGATCGGCGCCGGTTTGAATTGGAAGAG
ATCGACCTCGCCATGGCCTCCCATGACCTCAGCCTGGCCGCCGGAATCCTCCCAGCGCGT
CAGGCAAAGGGGCACCGCTCGGCCGGCGCGGCTGGCAACAGA
