Map Locations of contig_125576 (8958 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_125576

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_2868 1 567 bp MLOC_2868.1 Available Available None
MLOC_2869 1 843 bp MLOC_2869.1 Available Available None
MLOC_2870 1 1434 bp MLOC_2870.1 Available Available LOC_Os03g09220.5, FRAME:-3, EVALUE:2e-90, 13103.m01067 protein stage II sporulation protein E, putative, expressed
MLOC_2871 1 601 bp MLOC_2871.1 Available Available None





CDS Structure of MLOC_2868






CDS Structure of MLOC_2869






CDS Structure of MLOC_2870






CDS Structure of MLOC_2871






Contig Sequence (8958 bp)

>contig_125576 8958 assembly3_WGSMorex_rbca.fasta
CGTCAGCCTCCCTTGCTGCTTCGCGCGGCATCGAGCAGTAGCAGTTTGGACAGAGGAGGA
TGAACGTGAGGTGAATACAAAAAACTACAGGGTTTATAACGCAAAATTCTAAAACGAAGA
CTGCGGGTTGAATACACAAAACATCAGGGGCTTTATTGCAAAAACGCCACGACGGACGGC
AGAAGCACCACGTGCTTTATTAATAGGTAAAGATAAAGAGTAAAGATAGCACAAATGCCC
GTGCGTTGCAGCGGGGATAAATATAACTCATCCACCTGTTTTTGTCACTAAAATTACACG
GTCATGTGAGATCAAAATGTTGTAATCTAGTCTAGTACAAATTATTCAATCTGACATTGC
TTTGAAATAATGAAAAATCTTGTGACTTTCCATCACAACAATCTGCACCAACGAATAAAC
AATAAGCTTGGAAAACAAACAAGTACAACACAAAGCATCTAGGAATTGCTATCCATCTTT
ATCAATGTCTCTTCCCTCTGTACAATAATGTCATCATCACACGAATAGTGGCGCATCAAT
ATAAAGAAAATAAACAAAATTGCTCCAAACCTTAATTTAATATTTTCAATCTATCTAGTG
GCATGTACACATTTTCCCTGATGGTCGTGCAAGTTTTTGTGCCCCCATCACACACACGCA
GACACACACACTCAGGCATGACGCTTGGCGTTTGACAATGATGTTGGCCACCTTTCCAGC
ACCATGGCACCACCTGTCATCACCGCCCGCCCGGTCAGCCCACTATCTCTTGATCTTGGT
GTGAAAAAACTGGTTAAAAAGGAACTATTTACCTGATACAAAAACAGATAATTTCCTTGT
GCACTAAAAGAAGCTATTTTGGCAACCTATTAAACAAGATACATGAGTTTATGGGAACCT
CATATATTCATGTGAAAATCTCAAAGCATCTTTGATTGATATACTCTTCAGGTGATCTTC
CAAAATTAAGTGTGCCATTATGCTTGGCAAATTCAACAATCCACTTTATGTAGTCCCGTA
CCTACTATTTGCAAACTGTAGGGGAGGGCACAAGTATACGTCAAACGGGATCGTAAGCCA
TAGTAAGTTTAGTAAATCACCACAGAAAACCACAAACCTGGGTATGCAAAGAGGATTGTT
AGCAATTGGGATGAACACTGATGAAGAACATTTCCCATCCACTATTTTAGATTACCAGGC
AATCTGCATTTTAGAAGAAAGTGATCACGAGAAATCACAAAATCAGCTACATCTCCCTCC
ATGCCTTTGACATCAATGCAGCCCAAAGAGAAGTGATAAAAGTTTCCCCAAAAGTAGTAA
GGACAACTTACCATATCTTTAATAATCTTTCTCCTCTTAAACTCTTTCCAGGGTCAATAC
TCTGAAAGCAAATACGTCAAAGATGGATTTTTACCTTTCCTGAAACTTTAGCACTTCAAA
GTTTCAGCCAACCATTGTGTACTTCTGCCAAAGAAGATGAGCCACCTTTTTATCTGAGTT
AATAATGAAATCTTCTTGCCTTTTCAGCTTGAGCACGGAAGGCCTTGTATGGTTGTCGCA
GCTTGGTAGTGACGCAAGTCGTCGCATACCTCAGGTGCCGACGCAGAAAGCTTTGGCGCC
CATCGGTAGTAACAAAAACTTCCACATATAATTCCTAGTGAAACTCCTTGTACCTAATCA
CTTAAAAGGTGAGAAAGTAAGAAAAGTAGAAGCAAAAGAAAAGCACAGAAAAATTAAACG
TGCAAATTGGTTACCTGAAGGGTGTGATGTATCTAGAAGTTTGTTGCTTATGGAACTTTC
TATTTTATTAATGTTACAATTGTAAATTATTTTGAACTTTTAAAGCGGACTCACTTTAAT
TACCTGAACTACTAAAATTTAAATAGTGAACACCTCCAATTTTTGTGAGGATGATTCTTG
GTTGACCATCTCCTGTAGGTGGGCTTAGTAGGCTTTCTTCTTTCCAACAGGAAAAGTTCA
TTAGGTTCTCACTGTAGGCTTGCGGTCAGCTTCTAGAGATTTCGAGACAATAGATGCCAC
CTCATGATCATAGACGTTGTCGAAGAGACCATCCGAAGCTGTCACAATGGTATCACCTTC
TTGTAAATCGATAGCGTAATTCTGTGAATAAGGAGAGAAATTCATATATTAAAATCTTAG
AAACCTAAAAAGAAACAAAATAGTAACAAGATTAATATATAAACTTAACAAGCGTTGTGT
CACCTGTACAAGTCTTGAAGGATCAACACCGTTTTCTATTTGCAACGGGAAACTGAAACC
GTATGTCATCGCCTTTGTTTGTGTGTATACTTGTCCATTTCTTATCACCAGTAATCCCGA
ATCACCAATATTAGATACATGAAGGACCTGCCATATCAATCAGTTGATGAGCAAAAATAC
ATGTACAATTAACCACCAATAAATGTGACAGGAAGTGGTAGGCATTCCAAATCTTGATGA
CAGAATTCACAAAAAAGAAAGATTGGCAGAAGAACATACCTGGCCATCAAAGTGAGCAAC
CAAGACAGTTGAAGAACCAGGGGACCGTGCTTCAACTGCCGCCATAGCAAGGACTTCCTC
GGTCCTCATCCCTGGTGGCCCTTGATTGTCCATAGCAATTTTTTTGGAACTATCCATTAT
CTCTCTCGCATACAACCCCGCATTGATTCCTGAGGACAAAAGTCACATCCACAGTTCTGA
ACGAACATATTCCCGAGAACAACAGTGTATGATGAGAACTTAGATCGGTCAAAATTAATG
AAGACAAAGATGGCAAATAAATTAGATATGGACATCTGAAACACACTGATGTTAACTGCT
AGCTAACAGACACTTTCAAAGAGTGAATACAATAACAGAAACAAGGTGTATTTGTACAGC
CAGGAGTTCAGTGCACTCACAAGATCACACGACAGTACTCTAGCAAAGAAGGTATGGTTT
ACCTTCAAATGACCACTGACCAACTCCATCTGCAACACCAAACCAGCCGTCGCAAGCTAT
GAAATAAGCATCTTCACCACCTGTGTGCACCTGTTTTTTTAACAGATGTCAACGTTAGAG
AAACTAAAGAGCAACATGAATTGATTGCATGCATTTTATTTTTAGCACATAATATAACAG
AATAAAAGCACATGGAGAGTAAATATTCCTTCGTGTATACTGTATAGTATCTGCATGAAG
GAACCAGTAGATACAGTTACCACTGTATATATGTCTGACAAGAACCTAGAGTTCTTGTTT
GTTGTAGGCTTTCTAGGAACAATAGATGCCATATACTCCCTCCGTGAATACACCATTCTT
CTTACTTGTAACTGCTTTTTATAAGTTGCATAAGAGAATTGTACTGCGCTTTTCTATTTA
AAAAAAATGAAAGAATCAACTCTTGTAGGCATAACAACAAACAAGTGAAGGATACTGTAG
ACATCAAATTTGTATATTAGCATATCTCACGGGAGATATGTTGCTAATTCATGAATCAAT
GCCATCACATTAGCAAGGAACACAAATACACATTATTCTGTAGCTCACAATCAATTAGAG
AGAGAAAGAGAGAAAGCTGATTTTGGTGGTCGTTGTGCATCAAAAGAGAAAGTTTTTGTG
GCTGCTCTCAGTCAAATAACAATAGAATCTTAATCCTAATCAGAGAAAGGAGAGGAACTT
ACGGTTGCTGCTATGCATCAAATGTGTCGATGCAGCACATGGGCTTGTCCCATCGGTCGC
CGTCCAACAGCAATAGTAGCACAACTCGAGCTCAATTCAGCCTGACAAGATTACGCCGCT
CCATGTCAAACCTCCCTCCTTTCCTTCTTCCTCCCGGATCTCTCTCATCTCTCTCTACGG
CCGCACCTCATCGCTTCTCCCCCTCCCCCTCCACGCGCAAGAGACGGGTATCGCCAAGAC
CTCCCCTCCACTCCTCATGCTCTCTCTTTATCCCTCCCTCTCCTCCTTCCTTTCTATCTC
TCCCCTCGCCTGTGTTTTTCTCATAGGTGCAGCGCCATCTTTCCCATAGAGAGACCCCGC
TGGAGCTAGCCATCTTGCTTGGAACCCTCGGTCGTATTCGACGCTGCCCATCTCCGCGTC
TTCCTCCTCCCGATGGTTGCCCGTGGCAGCAAGGATCATGTTGAGCAGCCCGTCGCGGTC
TGTGGCGCAATATCGATCCGGACGACGTGGGCCCGGAGCATGGTGACCTAGACATGTGCC
GGCGAATCATGCGCGTACGACTTGGACGACGCGCGCTTGAGCCGGCCGGCGCGGACCTGG
AGCGCGGCGGCCTGGGCCTCGGTACCGGCAAACCGAGCGCGGAGGACTCGGACGACGCGT
GGAGGAGGGTGCGGCGGAGAGTAGGCAGGCATGGGTGCGGGGAGGATGGCGCGGCGCAGG
ATGAGGGCCGACGGCGGATCCAGATGGGGTGGGAGGCGCAGTAGCTTGGCTTGGTTTTTT
TTGTCAAACGCGTCCACAGATCAAAACGTTTTTCCCACTTATTTACTGGACCGCGGGTTG
AATTGTGAAAAACAGAGAGGCTTTTGTGTAAAAGTGCCGACGACGGACGACAAAAACCAT
CGGTGCTTTATTATTATGAGAGATTGTCAGGATTGTTCCCATAACAGTATTACCGGTTAA
TATAATTTCATTTTAATTTTAACTCAAGGACATATCGGTAATATCCTGTAGTCCTTTCAC
CATGCCAAGCACTGGAACGACTTCGCCGCTTTTCCGACGTTCACATATACAAGAGTATCG
GAACGACAGAAAGATGACATGTCGCCTCGAGGAGCCCCGCACAGCGAGGGCATCCCTGTG
TATCAGCCCTGTTTGCACAACCCCATACGCCCAATACTTTTCGGCATACTTGTACGACTT
GATTTGCCGATGCTTTTGATTGAGAGACCCACACGAAGTCACATACATACAAGCTGATCC
CTCAAGCAATCAGGTAGAAGTGGATTGATCGTGAGACACACACGGACGAACAAACTGATC
CCAAGCTACCAGGCAGCTGGATTCATCATTGATCGCGTACGAAGCTAGCTGCTCAATTGA
TCCGCTACATAATAGCCAATGAATATCTTGCCGGGAAACGGCGTACAGGGGTAGCAGTGC
CGATTTCCATGTCTCCGCCCGAAGGAAAATAGTCCAATTTTACCCTTGTCCGAGGAAATT
ACTACTCATATTACTTCAGCTGAACCCTTGATGCACAATAATAAACGTCTTATATTATCT
TGATGTATCGTAAAAGGACTCTGCTGATAATATAAGGATCATGAAAGATATATATGATGA
GATGTATGCTTGCATGTGAAGCCATTTCTTTGGGATTTGTAACACAAATTTATCAAACTG
GTTCTAGGTGTTGATTGTCTCTGGAAGGTGCTATCACTCATTCACTATTTTTGTATTTCT
ACCTTTCTGTTCCGTAAATAGAAAAATATAATGTTGGAGGCCTGGGAAACTCGTATGGGC
ACGCATCTGCCAAGCCCTGCCCGGCCTCCTGATTGTCTCGCGATCCGTAAAGTCGTTGTA
TCCTACATGATGAGACGACAAGTTTAAATTTTAATTTTGAAACTTATGACAGTACCGATT
GTAGCTTTTGAAACTAATCATTTCGTCGGTCATTCACTCCAAGTTTAAGAGTTGATAGTT
AAAACTTATGTTTATTGGTCGCTCGTATTAAGTTTCAAAAGTTCAACTTCTCATTCAAAG
ATATGAAAGATTAAAATTCGGAAGCCAAAAGAAAAGGCACACGTGAGGGGCTGGGTGTCT
CAACACCAACGTGCCACAAATCCTCTCCCTTTAAGGCCTTGCTAGTTTAGGGCTTTACGC
TGACAGTGAGAATCATAATAGGCTTCGAAAGTGAATAACTAGATATTATATGAACCTTGT
TGTTCTATTACGTTCTTGTATGACCCATGTTTCTTTCTTTGAAACTAACATATAATTTGT
TCAAAAATAACTAATATATCATGTATTTAATAGAATATATCTTTCTTGTTTGTGTTTTAA
AAAAATATTTCATGTATGAGTTTCTGCAGTATCTTATATTTGCATACATTTTCTCTTCAG
TTGTCTTTGATCCAATTACGAATCACTGTTACATTGCTTTACTTATTTTTGTAAGATTTG
GTCAAAGGATCGGACTATAATTTATCCATTACCAGTTGACAAATCAAATGACATCTAGGG
GATTCTTTTTCAAGATAGTTCATGCACTGCCCAATTTGGCCTGATTTCAGTCGTTAATTC
AACTTAAACCCACAACTAAGCTATAGTCGCCTAGCTGATAGCAAGTTTGTGCTCGTTGAA
CCTAATTTTACACAAGTAATCATATTGAAGTTGGGTGGGTGGCCTCCTCTGGCGACGTCC
GCTTCGGACGCATCACACTCCTGGGTTGGCACACGTTTTGCATGAAGAGAATGCATCGGT
GATCTCGTGAAGTAATTGTATGTTCTTACAAACATTTATTGCGTCTTTAAACAGTTATTG
CATCGGTGATCTCGTGGAGTAGTTGTAAAGATTTCCCAGCTGCACAATTCAATACTCCTT
CCATCCAGGACTCCAGGTGCATTGAGCGCCTAAAAGAATTTAAATTTTCAAAGAGTTTTG
GTCATCTTACCTTAATTAGTGCTAACTAGTCGTCAACCCGCGCATCCACACGGGCTAGCA
AATTCGTAGGCGTTATACGTTGAAATAAATATGCGACAACGTTTATTATGTGTGTAATGG
TAGAATTACTTTAAATTTATGATACACATCTAAATTTTTTTGGGATACCTATTTCAAATA
GTACTATCAAGGACATGTAATAGTATGCAATGTTAACACGAAAGGGGATATTTCTCCAAA
TAATTTGTGAATATAATATTCCCGTGTCTCTTTGTATTTCTAGTTTTTCCACAACTATAT
TATGACTTCACAATTTTATTACGCATGGTAATTTCAAATAAGCAAGTCATGGCATTGTAC
ACCACTTCTTCTACAAACATACCATTTTTTGTCCTTCGTGCATACATTATTTATCAGTTC
GAAAAAGTGTGTGAATTATGGAGAGTATCAGAACCTTTATAGAGAGTATCATGTATGTTC
AATGGATGATGACAATCATGTTTTCCAAGGCTGGGAGGAACATGATCACGGAAGAAGATG
AATTATGTATTCCTATTTTTTAGATCGATCCCTGCTGTCGTAACACATGTTGTCGAGCAG
TGTGTAGGGGTACCCACATCGCCACTGATCCAATGTTGTCGAGAGTCTAGACAGTCCATG
CATCAAATTTAGGCCATCACATGGGGCATCTTGGACAAGGTTAGAGCCCACGCATCAAGC
AGAAGTTTAGTCACCTAATCTATTGTCTCATACGCCATCTTGAGCCATGCCGGGCACTCC
AAACCTCCTCAAACAGTGAGAAACATATAATCACGAGAGTGCGTCATCCGGAACCTCTAA
TAAGGAGGCTAACAACAGTTGACCGTGCACCCCGTAGAGTTGGTTAGCAGTCCAGGGTCG
CACCACTGGAAACAAATTAAATGATGCGTGCTGAACTACTACCTCCGTCCCGGTGTATAA
GTCATTCACGTAGTTCTAAGTTGACAATTTAAATATTTAAATATGTATAATATGTGATAA
AAAATATATATTTAGAAACTACATCCGTGTAGAAATCTAATGATATATTTTTTAGACATA
TAACACATATTTAATTTCACAAATCGATGACTTAGAACTACGCAAATGACTTATACATCG
GGACAGAGGGAGTATGTCAATCCATAAAATCGGCACCATAGATGACTGGGAAGATGTGTC
GCCGCTGCCCAGGACGGGAATCGGGACAATTTATCGCGGCGGCGAATGAAGGAACGGAAA
ACCTCCACCACAAATCACCTGGTTGATGCCACGACCTGCCGCATTGCTTCCGTCACAACC
GCTGTGGCATAGCGAGTGATGAGACCCCCTAGTCCGCCTTGCATCCCCGACGCGTTGTGT
CCAACCTGTGAAGCAATGGTGCAGCCACGAGGATTCCTGTAAAGCAATGAGACGATCCGC
TTCGAGCATTACGTTGACAGCGAAAATCGGAATAGCCATTCAATATTAATAACGAGATAT
ATTATGCTTGCTAGTATTAGTACGTTACTTTCTTAGATGGTACATGTTTCTCTCTTTTGA
ACTAACATATCGTGTAGTTAACAAATACTATGGAATTCAACTCTACGCCGAGTGCCTAAA
AAACTCGGCAGAGGCCCAAATACACTCGACGTTGCCGAGAATTGTTCTCGGCAAAGGCCA
CAGACCCCGAGGGCACCACACAATGCAAAAAAGATGCCACATGGAGGAGGTTTTTTTAGA
TTGCATTATCAAATTTAGCCTCATTCCAGTTGTTAATATAACATAATTCGGCCATGTCAA
GTTGTTCTTGTGTCCATTCTGGTAACAGTTGGTGGTAGGTTTGAAGGACACTAGTAATTG
TATACTCCCACAGCCCGCCAAAGAGTGGAAGTTTAGAGTTCAACTATTTTTCAAAAATAA
GTGTACGTCTGTGTTGCGCTGGGTACTTTCGCATCCGCCCCCCCCTGTCCATGCCTCGAG
CGTCACTTCAATACGAGTCACCACACACAAACTCCCCAATCCTTTTCCTCTCCCTTCTCA
TTTTATTATCTCCAGGAATGAAAGAATCGGCAAAGCTGGTGTCACCTTAATTAAGTGGTG
GGACGGGGTTTTTGCAAAATCCTTAGAGGGTGTTTGTTTCCAAGGACTTATTGGTTTAGA
GACTTAAAAAGTCCCTATAAGTCCCATCTAAACCAAACACAAGGGACTTATTGAGACTTA
TTGTGGTGATTTGAGACTTATCAAATAAGACTCTCAGGGAGGAGCTTATTGGGACTTATC
TCGGGCCGNACCTACCCCGCGTCGCTCCAGGCTCATTCCCCACACGCCGCCCTGCCTCTC
GGTCCAATCGCCGCCGCC