morexGenes - Barley RNA-seq Database

Contig contig_124856
Source Contig contig_124856
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_124856 (7366 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_124856

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_2788	1	1253 bp	MLOC_2788.1	Available	Available	LOC_Os03g05280.1, FRAME:-1, EVALUE:2e-124, 13103.m00555 protein ras-related protein, putative, expressed
CDS Structure of MLOC_2788

Contig Sequence (7366 bp)

>contig_124856 7366 assembly3_WGSMorex_rbca.fasta
TATACATAAAATGTGATTTTTCTGGTCTTATGNNNTATATTTTTGTTTTCTTATGTCAAA
ATTTTCATAATAAATCAATATAAACGTATCTATTTGCATTTTAAATTTGATTTATTTATG
AAATGGTCGTAAAATACCTCGGGTGAGGAATAATTTAATCTTCACCCTGGGAGATGAATA
GAGTTTCTAATAAACTACATATGAATATATATAGATATAATTTAGAATGTAGATTCATTC
GTTTTGCTTTGTATGTAATCCGTAGTTGAATCTTTAAAAAGATAAATATTTAAGTAATCC
ATGCACGATAGTTAATCCAGTCTCACTGAGTCCTGCCATTTCCAGTGCTATGTTCTTGGC
TAAAAATGGACGTTCATCATTCGCCTTGCCCGTTTACCGATGGGCCACATCATTTCTCGT
CCTTTATTGCTGAGACAGCATGCAGCCAGGCCCATGGGCCACCGGGGGCATGGAGGACCG
GGCATGGAAGACCAGTAGACAAAGGAGATGGCTTATTCTCAAAAAAGGAGAAAAAGAGAC
GGCACACAAGTTGACCTAAAAACAAAGATGTCACACTCCCCTAAAAAAAAAAAAAAAAGA
TGTCACACAAGTTGATGCTCCCACGTGAACTGGCCCGTGACCCTGGTTCCCCGCATGGAA
ATTTTGTGCAACAGTTAACGTTAGAAGTGAGGGACAAGGTGAACCGATCTGTGATTATAT
GGTTAGTATGACTGTGATATCTCTACTCCATCAGGATTTAAATCCTAATGCTCATATTTA
TTTTTGAAATTATTTTAGGATTTTTTATGATGCGCATTCAGTGAAAGACGACGTCTCCAT
CGATGACGAGATGCCTATGATGACTTCGTAAATTTCAAGACAATATACCGACTCGATTTT
TTAAAGATGTTCATATGAATAGGATGTGCGCGCATGCATTCATAAGTACGAGTGTACACA
TGTATACATGAAAACTTGTGTTTGTACTCTATCTAAAAATAAAATAAAAAACCTCTTCTA
AAAATAATGCAGAAGACGGATTACAAATTCTAAACTATCAAATACATTCTAAATATATCT
CTAACACTTAAGAGTACCGGTGATGACCGCACACGTTGGGTACAAGAGTACTGATGATGA
CCGCACACGTTGGGTATTGGGTACCAGTACCGAGTCAGTGAGATGCTTGCTAAGGCTCGT
GAGACGCACGTACAAACACTGTTGGCGCATTTCGTCCTGATGGAACTGGTCCGGGGCGGG
AATACATGACAGGATCGTCCTTTCTCCGTGTCCGTGCAGAGAGAAACGACACTGGTCGCT
GCACGCATCACGTGCACATGTTCCCGAGAGCCCATCGATCGTGGCCGCCGCTCTCCTTCC
GGCGTTGGCTCTTCACAAGAACCAACAACGCACATGGCAGGTGCATACATGAACACGATG
CGATTGTAGCGTGAGCAGCCGCTAGAATTTTCCTTGTGACAAGGAAAACTGTGGCTAGCT
AGCAGTCGACCGATACCAGAGCTCGGGGCCAGAAAAAGGATCATCTACACGGAAAAGATG
ATAAGGCTATGGCATGCATGTGACTGATTCACTGCACTGCAGTGCCGTCGAATTGCCACG
ACCGAGGTCGGATCAGGCTATGCAATAGTGCTTCTCACGGGGATGTGTTACGGCATGAAA
TGATGAGGACAGTGAAGCAGTTTCGTAGTATGCTGTGCACGATAACAGGAGGCAAATCCA
CAGAAATCCGAACATCATACATACAGAGGTTACAGAGAGAACCCAAAAGATACCTCAAAC
CACAAAACACCCCCTGAATGCAGGATAACTGCCATTTTCGAAAGAAACGAAAAGAAGAAG
AAAAAGATACCTGAAACCAGAAAACACCCCCTCCTGAATTATATACCAGCAGTACACTCC
CTCCCACGCACACCACCACACCGGTGCGGAAGCGTATCGGCTCGCCGAGTCACCGGACCT
CATTACAATCAGCAAACCGAGTAGCCAGACCAAGCTGGGTTAGGAGACAGCGTCTTCTTC
TCTTCTATTTGTACAGGTCAATTAATTCCCCCACCCTTCACACCAAAACCTCAAGTTGTT
ATTTCTCCCTCCCCTTTACTCGCCACCGATGATCACTTCACTTAGATACAACGACTCATT
TACATCAGAACACCAACCAAGAACAACCTAGCCTAGGCACCGATTGCGAGATCTAGTTGG
TTGCATAAAGTGACTGGATCGGATCGGATCTACTGGCAGCATCCCCCACTCTTCTCATGC
TTCTGTTTCAGCGAGTTCCTCTTGACGACCGACGAGCCTTCCTCCGACAGACTTGGAACC
TCAAGAATCTGCAACAGATCAACACATTAGAGAGATTTACTTTGTCAGCTGTATTGCTAT
GAATCAACAGAATATAATTTCTAACGCTTTAAAGTAAGTGATGTTCTTTCTTCCCACATT
ATTTTTTTAACTCTCAACTCAGAACACAATTTCGCCTTGTGTGACACCAAAGAATGGAGA
TACTACTAAAGCTTACATTTGGCTCCTTGTTAAATAAAATGTTAAAATTGGTTTTGAAGG
AAAAACGGTATAGTCACATGTAGCTGGATGAATTTTCGGACACGATGAAGATGTCCACAA
AAAGGAGCTCCTTGACACATATACTGTGTGTATGTACATACACTAAGACATACAGAAATC
AGGGGGAAAACTGTACTATTCATACCAAAGGACAGAAGGAATACACATACAGTGATGTGA
CAATATCACACATCCATAAGAAGCAATTATAGTGCATCAAGTTAATCATCTGACAAAACA
GACAAATGGCTCAAGCATGTCCTTTGTTAGTACATCAGGTGATATGCTGCCCAAAAAGGT
TGCCTGAAGATTAACTTGCCCTTCCTCCTCCCAAAAGGCAACCACTATGCCTAAGTGCCG
GTATGGGAAGTGAAAGCAAACACTTAAGCAACTGCAATCGTCTATAACTGCTTTCCTACT
GTTCTCTAAAAAAATGTAAATCTGTTGGCTTAGTAATACAAGTTCAAAGACGTAGAGGGG
CCATTCTCAAGTCCAGGAACTCTAGTGATATGCAACTTAACAAACTGATGTACAACATCA
CGATATAAATTGATGATTGTGTTAATCATATACTCCCTCCGTTTCTAAGTATAAGACATT
TTAGAGATTTCAATATGAACTACATACAAATGTATATAGATATATTTTAGAGTGTACATT
CACCCCTTCTGCTCCTATGTAGTCCATATTGAAATCTCTAAAAGGGCTTATATTTAGGAA
AGGAGGGAGTACAATAGAAGGTATGTGCAATAAAAAATACGGGAAAAATCTCTGAATGAT
AAATTCAGGATTCACAAATCTCTGAATGATAAATTCAGGATTCACAAATCTCTGAATGAT
AAATTCAGGATTCACAAATCTCTGAATGATAAATTCAGGATTCACAAATCTCTGAATTAT
AAATTCAGGATTCACAACACAGGAACAATACTGAAATGAACATAGAATTTATTTTTTTAT
TTTTTTATGAACATAGAAGTTATATCATTATAACAAGGGTATACTATCTCTAGCCATGCT
TTGCAATAAGATGGGATAACAATTATAAAACACATTTCATCTAATAAAGGAATGTTCAGT
GCCAGATGACTAGTTTTATGAAGCACATGGTCGCAAACTAAATTGCTATAAAACGAGTCA
GCTCTATATGTTTCGAATTTTTAACTTTAGTGATGATGCTGCGAGGAATGATGCACACCT
TTACAAGTTAACTTCTCAGAGTTCTTAGAAGAATACTTTCAGAGTGCTCAAAAAGTAAAG
AGGTTAACATTGCAGTGCTTAGTATGTTCCCCCCGGTATACCTTTAGCACAAGCTCTTCA
AAACATTTCTCCACATTTTCTCTTGTTTTGGCACTGCTTTCGAGAAAAAGGCATCCACAT
TGCTGTGCAAAGGCAAGACCTTCTTCTGTTGTTACCATTCTGTCCTCATCCTGCAAGGTA
AAACAATAATATACAGAAGTCAGTAGCGTCACTTCATCTTGTGTATTATTCCTGTAAGAG
TAAAATACACTGGAGGTCCTAAATGTATTCCAAGTGTGTCAAGTAGGTCCTAAAAGTTTG
AAACCGTTCACCGTGGGTCCTAAATGTGTGCAAGTCGTTCACTGCAGGTCCTAAAAGTAT
TCCGAGTGTGTCAAGCAGGTCCTAAAAGTCGCGGGTAAAATGCACATATAGGACCCGCGG
TGAATGATTTCAAACTTTTAGGACGTACTTGACACACTTGGAATACTTTTAGGACCTCCG
GTGTATTTTACTCTTCCTGTAAATGGGCAGCCTTAACAAGTTTAAACTTGTATTCTCCTT
TTGGGTACAAAATTGATCTCATTGTACAAGCAAAATTACCACCCATTCTACCTAAATGTC
ATATAGTATCTGATGAAGGCTCAATATTCATGCAACGGGGCCTAAAACTGATCTAACAAC
TCATTGCTCACCCACCAAATACTTCTGGATTCAAAATGTACAACACCAACACTAGAGCTG
AAATGGAACAATCGTCACTAGCATGTAAAACACTTGATTTAAAATGAAAGAAAATATACC
TTGTCCAGTTTGTTTCCAACAAGCATTTTGACGCACTCTTTGTTCGTTGAGTGCAATTCT
ATTTCCTTGGCCCATACGTCAGCCAAATTTGTGAAACTTTGTCTCTTTGTAACATCATAA
ACTAACAGAAGAAGACAGCACAAAGTTAAACTTCTGCAATTTAACCTGCAACACCTTCCG
CAGAATAAAACGAAATACTGTAAGGGTTCTTTCTATATATTTTGTTGCTATAAGTCATCG
TGACAAGCATTTCAGCATTACTAATCTCAACATAAGTTTCCATTCCCTAAATGCCGCAAC
AAAATGATTACTGGTACATTATCATAGTGGGGTGACATCTTAGTTCAGTGACAAATTCAA
TCAAGTATGACGAAAAAACGGCAATGTTTGTTAAACACCCATTGGAAGCATGCCCAAGAA
TAGGCATACGAATGGAATGGTTAGAACTAACAAGCACGATTATCAACTTGGTTCAAAGGA
TACATGCATCTATATAACGGCTAAACTTGAGAAGTCCATTTATTATTCAGAAATCACTAT
TGAGTATGGCATCTTGCTCGGCTTATGTAAATATAAAAATAATCTGTTTGGGACTATTAA
CAGTGGCACCAGAGTTGAGCATGCACAAAGTTTGTAAGCCTAATTGTAACCTAAAATTTA
GTGGTATCAGAAGAGCAAAGAAACAATTTAAACAATTATATTAACAGTAAGATGGCATGG
AAGTACATTTGTAAGTCACACATGGAAAATGGTTAGTGCTTCTAATTGTGGTCATTAATC
AAATCTTAAGAGAAATCATATTACCTAGGATAATTCCATGAGCACCTCTGTAGTAAGAAC
TAGTGATTGTCCTAAACCTCTCCTGGCCAGCTGTAAACAAAGAAATTCAGTTGGTCAAAC
ACTTGATATTGTAGGAACACCATTAGATAGAAGACCATAGAAGAACATTATACAGCAGAG
AAGTATCATACAGAAATACATTACTCATTAGAATGGAATGCAGTGTTGTTTCAGAATATA
TTATCTTTACACGTTGTATAGTAAGGTGATTGTGCTCGGGACAGAACAGCCCAAGTGATG
ACCTATGGCCGGGCAAAAAACAATTTTGGGGCAAATGAAAAACTAGGCTCATAATTTTGG
GGGTACAATTGGAAGGAAGTGCATACTGCAGAGGAGTAATCGTCCTCAGAAAGCATAGAA
GTAACATAGATAAAAATTTCTCGGGAAAGCATGTAAACACCATATCCATAAGGGCAGCAA
GAAACTTACCGGTGTCCCATATTGTCAACTTCAATTTCTTATCACCAACAGTGAGAAACT
TGATTTTAAAATCCACCCCTGGAAAGAAATTGTTGTGGATTAAAACTAAATCCTGGCAAG
TAAATAACAGAGAGAACACAGCAAACTGGCACACTTATACAAGAAGATGATCATGAGTCC
ATAACTGGATAGTTGGATGCCCGTGTACTCAGGACATAAGGTGAGGCTGGAGCAGTTAGC
TGTTAGATGACTGGATTTTGATCGGCTCGGAAACTGAGCTGATATGGAGATATAGAACGT
TCGCGCCCCGCGGTAATATATAATTCCAATTGCATTTGGATCCAGGAAATAAGAGCAAAC
ATATATGCACTTTGAGCTGGTCACTGTCAATGAGTTCATCCTAAAAAACGACCAGGGTAA
ATATGTTTGCTAGTACTCCCTCTAAACTAATATGAGTGATTAGATTACTAAAAATAGTGT
TATAAATGCTCTTATATTAGTTTACGGAGGAAGTACTAGTTATGCAGGAACGAGGGTCAC
TTTCAGTATTCTCTCTCTTGTGTCTGGTCAGAACTAGTAGCTCCCAGAGAAGGACGGTCG
GATTTTGTCCTGGTGTTTTAAGAATACTGCTCCGTATATGGTAACCTGATGCATACACAT
TCATTCTTGGATCAAGGTTGCTACAATAAACACATGCACTGAATTTCCAGCCGCTAGCAA
AGGAACGGGGAAACATTCATTCTTGGCTCAAGGTTCCTAAAATAAAGGAAATGTTTAGTC
CGGAACAGGCTGAAACAAACGAGGAAGTGGTCAGGGCTAGACGGCGACGCAATTAATGAG
CAGTTACGGAGGGGTAACAGCAGAGGCAAACGCCTGCGGCGTTCCGCAAATAGGCATGGC
GGCGTTGGTCGATCCCTCGACTCAATCGAACTGTTCCCCCAACAGCTATGGTCTCTCTCG
TACGCACGGGGTGACGGAATCCGACTGCGTATGGACGGAACAGCGCGGCGCAGCATGGTA
ACGCCGCCCGGATGGTTGCCGCCTCCGGACGCTTGGCAACGTAGCCAGAGACGAGAGGAG
GGCGTGTTTACCGCTGCCTGCTGCGTCGCCGGGTCGGGGCAGGCGGCGAGCGAGATCCGG
GGAGGGAGGGGAGGGGAGGGGAGGTGATGATGGTACCTATGGTGGGGGAGATGTCGTCGT
CAGTGGGGGCGGCGGAGACGAAGCTGACGAGGAGGCTGCTCTTGCCGACGGCGGAGTCCC
CGATGAGCAGCACCTTGAAGGAGCAGTCGTAGCTGCTCCCCGGCGTCGAGCCCGTGGCCG
CCGCGCCGGGCCTGGGCGGTGGGGATCGAATCGCGCGCGTGCGGGCGGGCGGGTTGGTGG
GGTGGAGATTCTGGGGGGAGGAGGGGAGGGGGAGGGAATAAAGGAGACGAAGTGATAAGA
GAGAGAAAGAGGGAGGGGGAGGGGGAGGGGGAGGTCGGGGGGGGGG