morexGenes - Barley RNA-seq Database

Contig contig_121358

Source Contig contig_121358

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_121358 (4375 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_121358

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_2399	1	268 bp	MLOC_2399.1	Available	Available	None
MLOC_2400	1	257 bp	None	Available	Available	None
MLOC_2401	2	407 bp	AK369831	Not available	Available	None

CDS Structure of MLOC_2399

CDS Structure of MLOC_2400

CDS Structure of MLOC_2401

Contig Sequence (4375 bp)

>contig_121358 4375 assembly3_WGSMorex_rbca.fasta
TTAATCAAAATCGTCGTAACCTTTACGANNNNNNNNNNNNNNNNNNNNNCTTTACGACGA
TCCTAAATCTTCGTTGGCAATCTAACCCAATCCTACGTGGCAGTCCTACGTGGCAAAATT
AGGACGAAGTTAAAACGTCATGGCTGAAATCAGCCCAGCCCATTTCATTAGATCACATGG
GCTGATTTTATTTTTTTGGGCTTTTTTATTGGGCTTCTTTTGGTGCCTTTGCATATTTAC
AGCCAATTCTACTTTTTTTCGAATTTTGGTTTGTGGCCTTTTACTTTCTATTGATTTTCT
TTTTTGACCATTTTTGTTTTGTACTGGTCCCACATGTCATGATGATCTCAAAATTAGTCC
GACCCGTCACAAATTTCACATTTTTTCAAATAAATATCATAACTTGGTCCCCTTATCAAG
TTGCCATTTCGTAGGTATTCAAATCATATTCAGAATCAATATTTCAAACAGCCTAGGGAG
CAAATGAAATTCGTCCAAACCAACATTAAATTTGTCTATGAAAATCTTTACACTACACCA
CAACCCAGATATACCTAATACTGCCTACTATTACAATACATTTCTCTTATAAAAGACGCT
GACCCCTGGTCCTCCTCCTCATGTATCTACCCTCTTCATCCCCTCGCTCTCCTCACGCCC
CGCGATAGTGTCCTGATCACTCGAACCCATCTGGGTGGAGAACACGTAATTTAGGTGGTC
AGATCCAGATATAATAGTAAGTTCACCATGTCAGCCTAGTAAAATCCAATCTAAACACCA
TAAAATTTGCAGAATTAAATACAAACAAGCATGCTCAATTAGATCCTGCCTATAGATTAT
AGAATTGTGAAATGCCTAAACGATGATATGCTAACACCTTCTACAAGCATTCTGTCACTT
AGCTGGTGCCAAAATAACAACACAATCAGCCATGTTTATCAACATAGAAGTTATGTGGTT
GTGTCGATATAAAAGACACTGCACAATAGTACCTTGGGTGGCATCAGGAAGACAGCCTTT
CTGGAGGTGGCTCGGGCTTGTCCTGCAAACAACCCATTATAAATATCGACAACAAACCAT
ACGCATGTGCGCGCACACACACACACACCTACAAGGAAAGAGAACCACTGTTCTTCAGTT
ATTTCCATGTAAACAGATTTTGGATGGACATGTGAGAATATGAGGACATAAATGTTTTAA
CCCAATCACAAACAACAGTACAGGAAACATAAACATTCATGTAGCTACCGTGTTAAGTAC
TATTCCAAGTCAGCAGCTATCCCATAGATACAAAGGCAAACAACAAGGAAGACATGTATG
AGATAAACGGTGACCTACAGTCTTATGTAGACGCATCAATAAACAACACAACATTCCTGG
AGAAAAGAGAAAATGCAAAAAAATACATACAAATGCATTGAGTCAATAATCAAATAACAT
ACTTCTTATTGTCTATTTTGCTTGTAATAACAAAGCCAAAACGATTTGCTATTTCAAACG
TAAACTCACGCATCTCTTTTACAAATCAGACAAGAGCACATACCATCAAGAGCAGCCTGA
AACAACGTCGTGAACCAAGAAACAACAGTGGCACTATTCATCTATAAACAACATTAATAT
CCTGATGGTTTTGACAAGTTTCTATAATATAACACTGTATATGATTCAGGTTCTTAAATC
CGTGTAATAATATCTTGGGAGTTGGAATCTAATCTTAGTTACATACATACATGGACACAT
TATATTATTGACTGATTGATGATATGATCCAGTAAAATACTCAACCTACTACTCTGACCC
AGCAAGAAAAACACACACACAAAACAAGCAGCAACAGCAGCTATGGATCCGGCAACTTTG
GCAACGAATTACTTGTTGCCTAGGAAGGGTCGTTGTCGCGGCAGCGGGTGATGTAGTCGC
AACCGCGGTTGTAGGGGTTGGCGGTGGCGCTCCACTTCCTCAATAATCTGACCTGTCAAA
ACAACATCACATTGGCACTTTAGTCGAAATATACTTCCAAGTATACCATGACAATTCACG
AGAATGTGAGAGCTTAAAATAAACTACGTTTAGACTAGCTTCAGGTGCACTATCTGTGTA
AAGCTTATACTATTTGACCAACCAGCAGAACGGTGGAAGCACTAGTAGAATCGAGAAAGA
AATTCGTCCCATAATTAATTCTCTCCAGGCTAGTTAGCTATACAACGCCCTGGTTAGCAA
GCAATAGATGAGAAAGATGGATGTAATGTGAACTAACTCCAGGGCTATCATTGAGAGAAA
GATGTCACAAGATGAGCCATCATGTGCTTGTGTGTACATCAAAAAGAAAACAACATGATT
CAGATTATCTTGGACATATACAACAACCAGTATCATTGAGTGAAAGCAAAACGAAAGCCA
AATCCTTGCTCCTAATTTTATGATATTAATGAATAAGAACACATGTTACATAATTTATTA
CTGAACCTTACTTGATTTACTACTGCTACTATCAAGCAACGACTGCTGCAGCAACAGTTG
ATGCACCACTGGGAACAGCAGCCCTCGCGAAGGTTCCATCTAAGCAGAACACATCAACCT
GATGCACAATACCATGAGATTAGCCAAATAACTTGCCAAAGTACTTTACAAGTACGACAT
TATGCATAGTTCAAACAATAAAATCTAGACACTGTCGCATTTCAAACAGAGCATCACATT
TCCGCACAGCTGTAACTAGGACACGAACCACATGACTTGCATTTAGTTAGCTACCAATCC
CAACAACCAGCCATCTGTGTATACACACTATTGAAAACCAAAAATGGATGCCTAGCAGGC
AAAATAAAAAAATGCATGTGCCCCACCTCTAGCAGGTAGCATTCCCAGGGCAAAAAATAT
CAATTTCTTACTGAATTATGCTTATAGAGCTAGCCATTAATATATATACAACCTTTACTA
AATATATGTATTTACTTAGTTTCTTTAGCCATCATGCTCAAAGGTTCTAAACATGTCTTA
TACATCAATATATGAGACGGAACTGCATGGCGCCACTGCTCAGACCTTTCCCTGATGGGG
CTGCCCCGAACCTGACATGACACGCATGAGGGCGACCGGCCGCAGCATGCAGCTAGCTAG
GACTATAGCCGTTCGATCTGGCAATCGGCCAGGACGGGGCACGGCGTGGTATCAAGTATG
GACGGACATGGTAAAGTAAGCGGCCGTCATGCATGGATCTGGATCGTGGTACTGCCATGT
ATGGTTGGGCAAGTCCATTTTCAACTTGCCCAATATCCAATCTTTGCCCTGCCATCATGA
TGACCATCCAATTATATCAAGGCGATGGATCAGACAATATTCATTACAATGCATGATACA
AGAGATTTTCTTTTAAATGCATCTTCTAAGTGGTAAAGAAGGCAGAAGCACAACATATCG
GACTTACCAGAAGCACGATTGTGTGGGGTATCATCTGCCTAAGTAGAAGGATTTGGTTCC
TTAAAAGAGATGCATAGCCAAACTAAATACAGTAGCCATGCAACTGCCATCAACCAACCA
GGTAGAGTCGACTGACTGAATGTAACCATGTAGATTTTAAATCTCCTCTAAAGTAAACCA
ATCAGTGCTGGCCCACAAGCCATGCCAAGTGCACTTGCGCTTACAAACCCTGCTGAAGCT
TGCATACGTATCCTTGGAGGGACACAATCACTAATGTACCGGCGATTGACAGCTCTGGCT
GAACCCAACCTGAATCACAATAACTACTGTAAATAAAATATAAAAGAGCACTCTCGTAAA
CTGGCACACATAATTTTAGTGAAAGATTTTTTCCTGAGGTTCAGAATACCAAAACATCAC
AGGAAATAAAGTAACTACTGGAATTTCATTGCATCAAACATCATATATCTCCTATGTGCA
TAATATATAGCACACACCCAGACAGACTATGTAAGAAAGACAGGTATTACCATACATCTA
AAGAAACTGCGATAGGATGAATTCGATAGAACATGGAGCTGAAGCAAACAAATGCTCAGC
AATAATAGATCTACAGTAGTAATGCATCTATCCATGGGTACTTACCCACAGAGGAGGCGG
CCAACAATAAGGACCGTCAGGGACTTTGTATCGTAAGCCGTGATGGGGAAGAAGCATCAG
ACACGCAAGCACTCACCCCCAACATCTGACGGAAGAAGAAGAAAATTGTGAGGAGGAGGC
TTACGACCTCGCGCTCGTTGTCCATGCGGATCTTCTTGAATGCGACGATCTCGTTGGTCT
CCGTCTCCTTGGACATGTACACCTGCCTGGCGACGGCGGCGACGGGGAGAGAGAGGGGGG
GTCAGGTGTTATGACCGGTACAACGTACCAACGGAGGAGGCCCAATGGGCAGGGT