morexGenes - Barley RNA-seq Database

Contig contig_120794

Source Contig contig_120794

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_120794 (1480 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_120794

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_2337	1	932 bp	MLOC_2337.1	Available	Available	LOC_Os03g15960.1, FRAME:-3, EVALUE:9e-75, 13103.m01885 protein hsp20/alpha crystallin family protein, putative, expressed

CDS Structure of MLOC_2337

Contig Sequence (1480 bp)

>contig_120794 1480 assembly3_WGSMorex_rbca.fasta
ATATTTATTCTGAATGGACTTCGAGGTTATTAACGCATATGTGAGGGGTGTATGTAAAAA
ATTTAAAAAACGATTCGTTCTGAATATAATTTAGACTGCGGGTTATTTAGCACGAAGTAA
GGGGGTTTTATGTAAAATGTAAAAAAAAACGGTTCAGCCTCACTTAAAAACGTATCACAG
GTTAATTAGATAATTAGATGAAATTACAGGGATGTTTTTATAAAAATGCCACGACGGACG
TCAGCTTTATTATTAAGGGAGATAAAGTCCTTAGGGAGGTTTGTTATTGATAATGTCAAA
CCGATTCCCATCCCTATTCATGGGCTACGATTCTAAGATAGTGGTCGTTTGGTGATTTGA
TGTTTATTATGTTGAAGGTCATCCACTTGGGATCTGCTTCCTACTATATTTTCTCTGTTT
TTTATGAAGTTTTTTCGGTTCACAAAATTTGGTGCTATGGAGTAGTACATGTTTCGTACA
GTACAGTGAAAATCAAAGCAAAACTAGTCAGTAATTACATGCAAGACACATTCAGTCTTA
TTTATATTTGTAGAAATCATGCAATGCAGAAGACCGCAGATGAAAAAAAAGTAGCGAACT
CGTAGTAGCCGAATAGACAAATACTGCTCTGCTCACATACATAAAGGATACAACAGCAAA
TACGCGACGCTTTAGAGACTGACTACTGTACACCACTGAACTCAACTTTCGACCCGCAAC
ACTAGAACGAGACTCACTCAAACCACAGCACCCAAGCTTGTTTTATTGAGACTCTGGACA
CCAGAAGCACTACTCCGGCATCATGCATCCACGTCCGAGCAGAAGCAGCTAATCCCAAGG
TTCTCTCTCCATCTATCCGGTGATCTGGACGGGCTTGACGTCGGGCTTCTTGGCCTCCGC
CTTGGGCACGGTGACGGTGAGCACGCCGTTCTCCATGGCCGCCTTGATCTCCTCCGCCCT
GGCGTTGTCCGGGAGCCTGAACCTGCGCAGGAACCTGCCGCTGCTGCGCTCCACGTGGTG
CCAGGTGTCGGTCTTCTCCTCCTGCTCCTTGTTCCGCTCGCCGCTGATCTGCAGCACGTT
GCCGTCGTCCACCTCCACCTTCACCTCCTCCTTCCTCAGCCCCGGCACGTCGGCCTTGAA
CACGTGCGCGTCGGGCGTCTCCTTCCAGTCGATGCGCGCGCCGGCGAACGCCGCGGTCTC
GGAGTCTGTGGTGCGCGGGAAGACGCTGCCGCTGCCGGAGCCGAAGGGGTCCCAGAGGTC
GAGCGAGAAGGGGTCGAACACGTCGCCACGGCGGATCAGCGACATCGTCGGCGGGCTGTC
GAGAAGCTGCTGATGAATCTTTTGTTTACTAGTGGAGTGGTGCGTGAGAGCGAATGGTTT
GCGCGATCGAGATCAAAGAAGCTTTCGATGGGTTTTCCTGTGCCACTCTTGGGACGGTGC
CAATGCAAGCGGTGAGAATTTATGTGTGTGTGTGTGGGGG