morexGenes - Barley RNA-seq Database

Contig contig_120277

Source Contig contig_120277

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_120277 (5609 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_120277

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_2275	4	3569 bp	MLOC_2275.1	Available	Available	LOC_Os03g43040.1, FRAME:+3, EVALUE:0.0, 13103.m04629 protein retrotransposon protein, putative, unclassified

CDS Structure of MLOC_2275

Contig Sequence (5609 bp)

>contig_120277 5609 assembly3_WGSMorex_rbca.fasta
TGGCTACGGCTGGGAGATGCGGGCACCAAGTTTTTCCATGCCAAGGTGAGAGCGAGAAGG
CGAAAAAACTTCATTCACACTCTGCAAGTGGGATCAGAGATAGCCACGGCACATGAGCAC
AAGGAAGACGCCATATACCAGCACTTCAATGACCATTTAGGGGCTACGGTCGATCGCCAC
AGGGGCATCAACTGGGATAGCCTAGAGATGCCATCGGTCCACGGTAGAGGCCTCGACAAC
CCTTTCACGGAGGAGGAAGTATGGGAGGCGATAAAGGCATCTCCGTCGGAAAAGGCACTG
GGACCGGACGGCTTCTCAGGGACTTTCTTCAAAACCTGTTGGCCTACCATCAAAGAGGAC
GTGATGACAGTTTTCAGTAGCTTCTACCGCCTGGCCGGGGGTGATTTCGGCAAGCTTAAC
ACAGCCATGGTGGTCCTGCTGCCAAAGAAAGAGGGTGCCACAAAGGTGCAAGACTTCCGG
CCAATTAGCCTGATACACTCGGTAGCTAAGATCGTCGCCAAGGTTCTAGCACGACGACTT
TCAAGGGTGATTAGCAACATCATCTCGCCGGCGCAGTCAGCTTTCTTCAGCTCCAAGTCA
ACACAAGATAGCTTCTTGTACGTGCAAAATGCAGTCCGTTCGCTGCAGCGAAAAAAGAAC
CCCGCGCTGATGTTTAAACTCGACATCGCTAGAGCTTTTGACAACGTATCCTGGGAATAC
TTGCTCGAACTACTTCAACACCTAGGTTTCCCGGCGCGATGGTGAGACTGGATGTCTCTA
CTTCTCAGCACCGCTTCATCCTCCGTAATGCTAAATGGTACTGTCGGACACCAGATTAGA
CATAGAAGAGGGCTAAGGCAAGGGGATCCACTATTGCCCCTCCTCTTCGTCATCGCCATC
GACACTCTGCACCGGCTATTGCAAAAAGCAACTGAGCTTCAAATGCTTGCACCACTGCCG
GGTAGAGATCTCAAGCTTCGAGTTAGTCTTTATGCGGACGACGCGGTCATCTTCGCCAAC
CCCGACAAGGGAGAGGTTGACGCCCTGTTGAAAATCCTTCGGGATTTTGGGCAAGCCACG
GGCCTTCACGTAAACCCGGCTAAGTCAACCGTCTCTGCTATCCGCTGCGACGAGATCAAC
CTCCATGACGTCCTAGCTAACTTCGGTGGACAGACGGTGGGCTTCCCGGTGAAGTACCTA
GGCCTACCTTTAACTCTATCTAGACTGCGCTTGGTGCACATCCAGTACATCCTCGATAGG
ATTAGATCCAGGCTGGCAGGATGGAAGGGCAAGCTTATGAACATCGCGGGCAGACGGGTT
CTTGTTCGTAGCGTGCTAACCGCCTTGCCAACTTTCGCCCTTTCTGTGCCGCGAGCACCG
AAAAAGTTCTTAGACGAGATAGACAAAGCTAGACGGCGCTTCCTTTGGGCCCAAGAGGAA
CATATTTCAGGAGGAAAATGCAAAGTCAGCTGGCCTGTGGTTTGCTCACCAGTCGACAAT
GGAGGCCTCGGTATACTAGAGCTGCAACGCTTCTGCAGAGCCCTTAGACTTCGGTGGCTA
TGGCTATCCTGGACTAGTCCATACAGGCCATGGATCGGCATGCAGCTGCCATGCGACGAC
GGCGATAGAGCTCTCTTTAGCGCCTCTACGATAGTCACATTAGGAGATGGGGCGACGGCA
TCTTTCTGGTATTGCTCCTGGACGGGAGCGGGAAACCTCAAAACCCAATTCCCAATGCTA
CACAAACACTCAAGGAAAAAGAACCGATCCGTAAGAGAGGCACTGCAGAATGAGACCTGG
ATAGTAGACCTCGCCCATGGAGACACAACACATGTGTGGGCTGAGGCAATCAGACTGCAC
AGATGGTTGCAGACCAGAGAGTTACACCTTCAGGAAAACACTAGGGACACCATCAGATGG
ACACATGAGGCGTCAGGAGTATACTCCGCCAGTTCAGCATATAAGGCCCAGTTCCAGGGC
TTAACAAAATCATCATTTAGGAAGCTCATTTGGGCTACTTGGGCGCCAGCTAGATTAAAA
ATCTTCACCTGGCCGCTCCTGAGAAACAGGCTTTGGTGCAATGATCGTCCGTAAAGAAGA
AAATGGCCAAACGGATACTTTTGCCAACTATGTCTCCGGAACCTGGAATCGGCAGTGCAT
TTGTTTTGGCAATGCTCGATGGCGTCGGCAGTATGGACGCATTCGGCGGCACGAAAGGGT
TGTGCTTCGCTTCACCCATCCGCATGGAATGACAGGGCCAAGTCAGAAGACATCATAGTA
CAAATGATTAGCAAGGCCAGACCAGAGCACATGAAGGGCATCAGGACCATGATAGTAATT
ATCACGTCTGAGATTTGGAAGGAGCGAAACGAATGCACTTTCAGAAGAAAGACCTCGGGT
GTCAATAACATAAACAACTCAATCACAGCAACCCTCGAGTTCTGGAGGCAGGCGGGAGCG
GTCTGTCTGGAGCACCCCTTTGGGGAATCAACGGGAGAATTTACGTAAGTTGTGGGGCAC
CGTTCTTCTTTTCCTCTTCTTCTTTTATCCTTGATCCTTTGGATCGAACCCACTTTGTTG
TAGCTCGCCTTTCTACCAGCTTTGTTTAATATATGCCAGCCAGCTGCTGGATCTTTCAAA
AAAAAAGAAAGATCGGTTGCAATTCGGAGCATCTTGGTTTTGATCCACACAAAAGGGCAG
TCGTGATTCACCGGCCGCTGCTAAGCTCTGGCCACAGTTTGATGGAAATGGGGGAATCTT
GGTTTTGATCCGAGCAAGCCGTCGATGCCGCCATCAGGGTGTGCATGGAGAAGAGGGCCT
CCCAATCCAAATTGCAGAAGAACTTGTCAATGCTGACAAGCATATTGTTGAATGGCAGAA
TATTCATTGATTTGTTCACGAACGTAATGCTATACTAATGATACTGGTCATTTATATAAG
TGTTATGCACTGCTATAAACACTCTGATGGTTGAATATTCAGCTACTTGTTTACAGATGT
AATCCAAAGTTTCAAGCATTCAAATACCTGTGTAGCAAGTGTGGCAACTCCAATTCGACA
AGGGTCTCACGGGCTATTTTACAAAAAGGAGATCCCTGTTAATAAAGGTTGCAACGATCA
GATCCTGGAAATGGTAATACACTACGACAAACAGCAAATAATAACCTTAATGCTGTGAAT
AATGACAAGTAGTGAGGATTAAACCTCGTATGCCCATATCTCTATTGGCTGGGATGGAAG
CTTTGCAGGACTGTAGGAAGATCCCTGTAATCAGTAATGGAAATGGTTCAAGCAAAACTT
TCAGATGATTACATGGAATAAACAAGTGTACATGGCTTGTTGGCAATTTACCTTCCCGCT
ACGCCCACTCAATGCAAGCCCTGCCGTTATTGTCTACAAATTAAATTAAACAATGTTACA
CAAAAGGCACAACTGCATGTTAATTAATACTCCCTTGGTCCGAATACTTGTCGCCCAAAT
GGATACAAATGGATGTATCTAGAACTNNNNNNNNNNTAGATACATCCATTCCTATGACAA
GTATTTCCGCATGGAGGGAGTAATAACCAATCCTACTCTCTTCAATTATCAATTACTTAG
TTACTTACTGTCAATAGACCAAGTTTTAGCATAGTCGGAACGCTTCCATCACCTGAAAAA
CAAGTGTAAGTAATGGGCCTAGAACAAGCTTGTAAGGCTAGGGAAGGTATGGACGGTAAA
AAACAAAAACAATGGGAATACAAACCGTAAGTTTTTGCCAGGTAATTTATGATGTCATCT
GATTCATACATAGCGACTCCTGTGTTTGGATCCACCTGCAACGTAAGAGTGATGTTATCT
GCATCTTGCATAGTTCATTTCAAAGAAGGGAGGAAAAATCCCTGATTTAGTTTAGTAATG
AAGAACAAATCATGCCAATATGACAAAATTCAATCTTGCCCAGGAACAAAAAGTTTAGCA
ACATGAGTATAGTTAAGAGTCCCGCTTCGGTACAACCCCCCTCACAATACGTATAAAAGG
TAATATGGACTTTACCCATATTTGTATATATACACCGTATATACCTCGACTGGGTGTTTG
GGCCGGCCCATGGAGATGGCTGCAGTAGCAATCACACCGGTACTGCCTGCTGTCTAATTT
CTAGAAAAAAAGAGAAAATACTAACCTCAAAAGGTTTCGAACTCGAGCCGTGTAGCTCAA
AAAGAACAGCTACTAACCACCTAACCAAAGAACTGTTGGTGATTAATATTGAGCGCGTCT
TTTTAAGAACTAGGTACAACGCAGAATCCAAACAATTTTTAGAAATTTGAAGATATTTTA
AAAACCAGTTATGTTAGAAAATCCGACAATTCTCTAAAAAAAACGAACTTTGAAAATTCA
TTTTTTCTAAACTTGCCTCTTTGACAGAAATATTTTATGAAAATCCCAAACATTTTCTTA
AGAACACAAACATTCTTTATTTAGACAACAAAACTTATTAATGGTTACATTTTCGAAATT
CTTCACAATTATTCGGAAGCACGAACATTTTTTAAAATTCCCAAACATGTTTTGTTTTTG
AGAAAAATAAATAAAAACAGGAACAATTTTAAAATTCTGAACAGTTTTTGGGAAACAAGT
ATATTTTCTTTAATTCCCATACATTTTTGTAATTTATGTAAAAAATATGAAAACAATTTA
TTTTAACAATTTAGAACATTTTTTTTGAAAACTTGAACGTTTTTTCAAATTTATGTGCTG
AATATTTTTTTAATTCGCATACAGTTTTGTAAAGATGTGTACGGTGCCCCCTATTCTTGA
AAACTTCTTTGTGTTTTAAAAAACGTACGTGTTTAAAATTCAAAAATAAGTTTGAGAGTT
TCAAAATGTTTGAGTTTAATTTTTTTCACAACTTTTGCAAATTGCTTTTTAAGAAATATT
CATTTTTCAGAAAAATGTTTCGCTTTTTATTTTCAGGAACCGGCAGTGTTATTATCTTCT
TTTAAAACGTTGTGCTGACTAAATAACCAGATGTGCTTGTTAATCCTAGTGGCTATCAGT
TCCCTCCTGTCAGTGGGAGGTCTCATGTTCGATACCTTGGATAGATCTCAACCGTTGATG
TGTTTAGGGGGTTGTGCCGAAGCAGTGTAAAACGTAATGTTTGGGAAGTGCTCGACACCC
TAAACGGGGTGTGGCTATCTCATTATATAAGGGTACCCAAGGGGTAGAATACAATGTACA
GTATATGTATACAGGGCTAGGTATATATAGTCTAACACCCTCCCTCAATCTTAACTATGG
CCTGAAGTAGAAAGCAAGTTAAGATTGCGCCTACAGCCTACAAACTGTGGTTGTGGAAGA
GGCTTCGTGAAGATGTCAGCAAGTTGATCCTTTGATGAGATGAACTTGATAGAAAGTAGC
TTCTGTGCAACGCGTTCCCGAACAAAGTGATAGTCCACTTCAATATGTTTAGTCCTAGCA
TGAAACACCAGGTTGGATGAAAGATAGGTAGCACCGATGTTGTCACACCACAGAACCGGA
GGATGAGCTTGAGTAACATGCAACTCTCTCAATAGAGACTGTACCCATATAATCTCAGCA
GTCGCGTCAGCAACAGCTTTGTACTCAGC