| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_120129
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_2258 |
3 |
2328 bp |
MLOC_2258.1 |
Available |
Available |
LOC_Os11g38930.1, FRAME:+2, EVALUE:5e-113, 13111.m03830 protein tRNA-splicing endonuclease subunit Sen2, putative, expressed |
| MLOC_2259 |
3 |
3573 bp |
MLOC_2259.1 |
Available |
Available |
LOC_Os09g15480.1, FRAME:-3, EVALUE:2e-174, 13109.m01466 protein Ser/Thr-rich protein T10 in DGCR region, putative, expressed |
CDS Structure of MLOC_2258
CDS Structure of MLOC_2259
Contig Sequence (7456 bp)
>contig_120129 7456 assembly3_WGSMorex_rbca.fasta
TCACCTAGCACCAGGAAGGTGGAGGCATAGAAGAGGCCGAGCTCCTCACGGGAGAACTGC
AGGTCAAGGCCTTGCCAGGCTCTGTCGGCGTCCGTCCTCGATAGCCAGAGCCACCGCAGT
CTGAGTGTGAGCCCTGTGCGCTCCAGGTCTCGGATGCCCAGCCCTCCAAGCGCGAGCGAC
CGGCTGACCGTGCGCCAGTTCACGTGACAGTGTCCTCCAAGCGCAGCCGCGCGACCAGCC
CATAGGAAGCCGCGCTGGATCTTCTCTAGTTGCTTCAGGGTCTTCTTCGGGGGCGCTAGA
GCAAGCATCTGTTGGGTTGGAATCGCGCTGAGGACCGATTTGACCAATGCCAGCCGCCCG
ACTTTGTTCATGAGCCATGCTTTCCATGTTGGGAGGCGGCCGGCCACAACATGGACTAGC
GACTGCATCTGAGCCGCAGAGGGTCGCCTAGTGGTGAGCGGAGTAAAAACACGTTGATTA
TCCCTTTCTGTTAACTAAAAACAGATAAACATATCAAACATAATATACTCTACTTTTGCA
TAAAGTAAAATAAATAAATAATAGATTGAATGATAAACGTTGTGTCGGATATGGACTGGT
TCAATGAAATCGGACACCCTCCTAAATGTTGTGTGGCATATGGACTGGTTCTGAACCTGC
AAAACACATGCATGTTTTTCAAAGCACAAAACAGAAGCAAGCACACCAACAAATCCATGA
ATATCGATCTAAAATCAAGTGATGCAACAGCTATATATGTAATTATGTATGTAGACAAAA
TTGAATGACCGCAACGCCTACTTCTGTTATCAGGCACTGTGGACCTGCTACCGCTGATTG
CTGAAATCAGTCAGGATCCAGTTGGCCAGGTTGCCCAAATGAAATTCTAAAGTGGCCAAT
CAACACAATAGAGAGGCTGATCAAGTAGACGGAGTAGTAGGCATGTTGTTTACTCATCAA
GGCCTTGCTGGAGCTCCCATATTTGCTTTGGATCTGCAAACATCAACAAAATGTTTGGAA
TAACGCCATGAAAACGATGGTGAAGCGAAGGTAAATAATCGATACTGGTGGGAGTTTGAT
CTCTGACTTACCTGATGTCATTGATGTTGACGAGCAACAGCTTGATCTTGTCTGCCAGCG
CAGCCGCCGTCCTCGTGAGGCGGCACCATCCCCGTTGACCAGCACTGGGTTGCCGCGCCA
CGCGGTGAACGACATCCTCCTCCCTCTCCTCCTCGCCATGTCAGGAGATCATGCCGGCGA
GATCCCTCATTCAAGGGAGGTGGCACCGGAGCCATCGCCTAGAACGGAGTCATCTTCTTG
CTCAAGACGAAGAAGAGGTAGAGGGGTGGCCTGTGGATCTTGGCCGAAAGGGGGGAAACA
AGCAGGGGAGAGGAGGCGGCGGCTATGGCTGGTGGCATGTGGGGGAGAGGTGGAGAAGAA
GACGTGCGCATGCGACCCAATGCGGAGAAAAGGAAATAATCCAATCGCTGGCTTCTTATT
TTGCTTCCCTATGTACGTACGGTAAAATCGATACAGTAAAAGCCCAGCGATGCCCCTGCC
TTCGGTTTCCAAAATAGAACCCCTCCCGTGCCTCTCTCTCCTCCCCCTGCCGCCGCCGCC
GCCGGCGGCGCGAGTCTAGAAGAGAGGCCGAAAGCCGGCGCCTGCACCGCCGCCGCTGCG
CCCCACCGCGCCCGGCCTCCAAGCAGCTCCATTCTTCACCTTCTCGCGCGCGCCTCCGCC
GCATCTCTGGACCGCTGCTTCCTCCCCGCCCCAAGGTGAGTCTCCACACCGCTCGCTCTC
CCTCCGTAGCGGCGGAGGAGCGCTGGCAGTGGCTGCTCCTCATTTTAATTTTCACCCCCC
CAAATAATCCCGACACTAGCTAGGGTTCCCTTCTTATCCAGTCGATTTTCTGCAGTGATA
GTGCAGGATCTGAAGAACAGCTTCAGTTGGTCTCTGACATCTTCCAGCATGTTGAAAAAA
GGATTGATCGGTTGGGTGTGTTAGGCCGCAGGATATCAGCGAAAGCGAGTGGCGCACAAT
CAGTCTCCTCTGAATCACCTCCATGTTTTGCTGTCTGCTCTGCCCCGATGTGAAACATGG
AGTCCACATTTCATACCAAATGTGCATCTGTGGCATATTTTTGGTTTCCTAGGTGTGGCT
AGGTTTTACATTCTAACGTTAGTGCAATTCCTTGCTGCATTTGCCACCGCCGCCCTGACT
CAAGGGGATCTGACCCCTGAGAGCCCTCGCTGCCAGAGCACGAATCACCATGGCCGCGAG
AAATTCGACCACTACCAAACCAAAAAATATACTACTGAATACAAGCTAACGGTTCCATGT
ACTTTGTAGATTTTTGCCTTTTCTATGCCAATATCTTAACACTTGTGTTGTTGTGTTTCA
GCCTATGGACATGTCCGGCCCCAGATGGAAGAAGGGCAAAGACGGCAAGAATTTCTCAGC
TCTGGCAGCAGCTCAACCCATGTCAGGCATTGTTGCTAAGCTCCAGTCTTCACTGAAAGG
CGCAACACTTGTGGCCACTTTATCTAGCCAGGGTAGGGACGCGATTCTTGGCGTGAACCC
GCAGCAAGCTACACTTCTGAACCGTGCCGCCTTCGGCCGGGCTCTGGACAATGCTGGAGC
AGAGAAACAGTGGTTCCAGCTGGGCGCTGAGGAGGTCTTCTACCTATGCCATGCTTTGAA
GTGCATCTCAGTTGAGTCGGCGAGCAAGGAGCTGATGAGCCAAGGGGAGCTGTGGGATCA
CTTGTGCTCTGCATCAGAGTCATTTCCTGAGATGTACAAGGCATACTCGCATCTCAGATC
GAAGAACTGGGTGGTGCGGTCGGGCTTACAGTATGGCACAGATTTCGTAGCTTACCGTCA
TCACCCAGCGCTCGTCCACTCAGAGTTTGCTGTGGTTGTAGTCCCAGAAGGAGTGGAGTT
CGGCGGTAGGTGTGGCCGCCTGAATGTGTGGTCTGATCTACTGTGTGCACTACGAGCTTC
TGGCAGTGTGGCCAAGACACTGCTGGTTCTAACCATCTCCAGCAGTAATTGTGAACTGAG
CTCCCCAGATTGTTTAGAACAACTGGTTGTTCACGAGAGAACAATTAGTAGGTGGATAGC
CCAGCAGTGCCGTGAGCAGCGATGTGAACCGCGCAGAGAAGAAGCAGAGAAGGAAGAACA
AGATCAGGCAAGAGAAACTGTAGTCTTCAACTATTTGGGCGTAATACTAGGCTTCACAGT
TCTTTCTAGCTTACTTGTATACAAGCTGAGATTCCAACAATAAACCTAAATATTTCTCTG
TACTCCTATTGGTGATGTGTAATTTCTCATCTTATCAAACCTGTGCCAGTATTCTTTTGC
ATTTTGGAAAGATTTCTAGAGATGACCCATACATATATCCATACAACTGTATCTGACTGC
AGAGTGCAGACATCATATTATGGTATGCTCTGGATGGTGTTTTCTGTGACTTTTCAAGGA
CTGCATTGTTAGAAGCTTCAGTTTCCAGCCTATTGAAGAAAAGAGGTACACTAGACACAG
TTTCTTCAAATATTTGCACAGAGCTTTTTCTTTATAGTTACAGTGTTTAGTACACAAACA
CATTCAGGTCTTAAGGTATACATTTAGTAAACATCAGAGTCGATATCTACTGTATTGAAG
AACTGAAGGTACAATGTCTGTAGTAAAGCATGTATGTTCATAGACAAAGGTGGCAACATG
AAGTCTGTAAATATACATATCATATCATATTATTATTATTATGTATATATATTCAACAAT
TTGAATGATCTCTCTCTGAATTGATAAATCTGCATACAGTAAATAATTTAATCGCCATAA
CTAGAGATCATTATATGATCTTAAAGCGCAACTGTGGAAATAACAGCATGCACAATTGTA
GCTATTCATTCTTTCTTCCTATTTTGGGCTCCCGCCTTTAGGTCCGCATTGGCTACTCTA
TCTGGTAATGCACTGTGTGGTTCTTCCATATACCACTCTCGAGGTACTTTTCATATAAGC
TAGCTTCTCCATCATAGTTCACTGAAAGAACTGCTGTGCTCCTTGTCCCATAGAGCCCCT
TTGCAAAAACAGAAACATGTGCAAAAATGTAAATAAATATAGCATTGCAGTATCAATATA
GGCTTCTGTACTTGACATCTGTGTGCTATTTTAGTGGTTAATAGGTACTATAATTTTTCA
GATAATTCAACTCTGAATGTAATTGTAAACTGCAATTAAGTCAGATTTTATGCTCACTTC
GTCAGTTTGCACCTCGATGAAGATGGAGCTCAGACCGTGCTCCCAGGTGGGATCACAACC
GGTGTTTGGCAGCCTATCTTTATCAGCCCTCGTCGTGTCAGTCATTAGTCTGTCAGCTAT
ATCCTTCGCTTCAACTTCATCATCACCATGCTTCCTTATAAACTCCCTGAAGTTTTTACC
AAGGCGAATTGCCTACAAGCAATATATGCAATGATGAAAAATTGTCTGCACTGCATTCCT
TAGGCACACTCTTAGTTTACTGGTCCCTAAGACAGAGTGGCTTGCAATCATGTGTTATCT
ACTCCTGTCTTGCTGCTTGTACATGCAGTGCTATTAATTGAGTTAAATGCACTGCCCTCT
ATAACTAGGGAAGTACTTGACTTGGTTTTCATGTTGCTATCTCACATCTTTTCCAGCTCA
AAAGTTCCCTTTACGATTCTTAGTGCAATACAAGTAAAATCAACAAAGGACACCTCATTG
GACATTCAGCATTTCTAGCTTGCTACTGATGTTCTTCCACGATTTTTACCAAATAACATC
ATCATGTGCATTCCTATTTCTGTGACACTCTGGGAATTCTATCAATTTGTAAGGTGTCCA
TTGGACATGTAGTAGTTCTGTTACCTTCTGCCAAGGGCTATCAAGCCTTGCATTGGACAA
CACATGGAGTCCTGGTGAGACGAGCTGAATTGTCGCAGGCTGCCCCTTTGGCCGGTTTGA
CACGTAGACCATGACATTCCTGGTTAGATCAGCTAGTATAAGGTTGAAGCCATTGTACTC
ATCAGCTTCTTTTGCCACTTCAGTCGCAACCTCCAGTGGGCTCTTGTTTCCCTGTACAAT
GCAGATTCTGTGGATCATGCTCATGTTTGGAGCAAGGTAAGTGCTCTCTATTTCCTCAAC
ACACATCCTATGGACAATCCTGTGCATGCTTTTCCTTTTGAGGGGGCGATGGCAGGTTAC
CAGTTGTAATAGGAAAAATGTTTTAAAAGATAAAGTTTTGGTTTCTAAAAATGGGACTGT
ATGCCTTTGTCTTCATGTAAGCAATCTCTGTACCAATCACCATCAGAACTGAGAAAAATG
GAATAAACACCAGACAGATAGCGACTTTCAGCACATAAAAAATGATTCTGTCAGGAACGC
ATAGTAGAAGACACCAACTTTGTTTGTACAAGAAATGAAACATATCTTTTCTTATCATGT
GCATATCTCCTACGTTGACAACCACAAACTTGAGTTTTGATTTACCTGCAGGAACCTGAG
GGGCAGGTCTCCCCTAGTGCGTGCGCCGGGCATTGCATCAGGCTCGAGCACATTGGTCAG
GAAGGCAAGCCTGCCATCTTTGGTGCTCCCCATCCATGTTCCTCCACCGAGTACATCCCT
GCCACCAAGAATCTTCATTGAGCCCTCGCCCCACCATCCTACTGCCTTTGTAGGCCTGCA
TACATGAAGAATAATAGCAGATGAAGAAAGAACATTGTTATTCTGCAATGGGAAAGGCTT
CTCCAAGATAATTTGCTATGTGGCCTGGTGAATAAAGCGTGCAGCGATATTAGGATCGGA
ATGTTGGCATGACATATGACTTACGGTTCATGGGGCTGTTGTCATGGAACATGTAATTCA
TGAGGAAGAGCTAAATTCCAAAACGGAAGCTCACGATGCAACGATATTACTTTCAGATGG
GAGTACCGCAAGGACGAATGAAGCAAAACGAAGTGCTGTACCTGCTATGGAACTCATCTC
TGTTGAGCAGCAGCAGGAGCTGATGCTGTGGGTGAGCCTGCCAAATCCATGCAGCGATAC
ACATGGCTTCAGGTGGTTCCTTACTCCCTGCTTCTAAAAATAACTCCCTTGTTTTGCAAC
CGTGCGCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTACCTGATATTTCTCCCCGTGCACG
CCTTTGTATTTATAGGAAGAAGGCTGAAGGGGAGAGAGAAGAGAAGCAGAGCCCACAGAG
TGTCTTAACATTATTGCCTGCAACCAGGTGCTCTGCAGTCTGTTATTCTTCCGTCAGAGT
TCCATCCTGTTCACTTACCAGGCTATTACCTGGCATCTCATGTCTTGAGGGTCCTTTACT
TACCACTAACTTCTTCCCTACAGCTACCCTTAACTTGTGTGATAGTGGGGAAATATCTAG
TACTCGCTCCGTCCCAAAATAAGTGACTTAACTTTGTACTGAAGTTACTTGTTTTTGGAC
GGAGGGAGTATTTTCTTTTGGGATAACTCCCAGTTTGGCCCATCCTCTTGGCTCAGAATG
GGGACAGCATCTACCACGATTAACGCCAACTATATCACTTTTATTGCTTGCGTGGAGATG
CAACTTTGATGCTTTTTTCCTGTAGGTTGCTGTTCTATTATTTCTGGGGACAGAAAGCAA
AAGGCACGTGAATCGCTATTAGCGTAGATTCATACAATGAGTGATCAGGAGGCTGATCTG
CAAAAAAATTAAATCTTGTAGGCTCTGGAGAATGATCTTGCTGATCCATATCTGAATGGA
AGTGGGATCTTGACTGGATCACTCTCCAATACTGGTTTGGAATAGGATATACACAAGTTG
TAAGCAACGGCCTGGTCTTTCCAAGCATATGACTCTGCGCCGTAGCGTATTCAAAACCGC
CTACCTGTATCCTGTGGGTAGTTGGCTTTGATGGTTCCACACGTGTCACTACAGGAAAAC
AACATGCCTTTCAGGCATACATCACCTGCCCCATCTGCTTTCAGGCAAGTAATTCTGTTT
TTGTATGCAGCAACATATTTTTCTTCTTTGCCTCAGGCCATGTTTAGCGTGTCGTGAGAT
AGACATGTCAAGTGGAGTATTTTTTTATTTTTTTTTGCTGAACGGTTGCAATCTTTCCAA
GAAAACTAAGATTACAGATACGCCGTGGTTTAGGATTTGCAGAGGGGTCATATGTTATGT
CCACTCGTATGACAAGTTGTCTAATTTTCTATTGTTGAAAAGCCAGCAACTTTTTAGTCA
CTGTATTGGTACATGGTTTATATCTCCTTATTATAACATTCAGGTCATCATACTCTTAAA
TCTGCATTACATCACTGCCTTCTAGAGCTGACATGGACTGGATGCCATACCAAACAAAGT
CTAGGAAGATTGTTGGCTACTATTATGCACTGGACTTCACTGCTGATCTGCACCCGCCGT
GTTTTACCACAAGTAC
