morexGenes - Barley RNA-seq Database

Contig contig_119743

Source Contig contig_119743

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_119743 (1706 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_119743

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_2219	4	1547 bp	MLOC_2219.1	Available	Available	LOC_Os09g19310.1, FRAME:+3, EVALUE:1e-15, 13109.m01812 protein retrotransposon protein, putative, unclassified

CDS Structure of MLOC_2219

Contig Sequence (1706 bp)

>contig_119743 1706 assembly3_WGSMorex_rbca.fasta
TCCCGCGGCCTCCTAACGCCGGATCTGCCGCTCCCACCCCAGCGCCGCCGGCCGCCCCGA
CCCGGCGACCCCGGCTCAACTAGCCGCGCGAGCCATGGATGTGGCGACGGGGGCCATGGA
AAGCCTCCTCCCTAAGCTCGGGGAACTCCTCATGGAGGAGTACATGCTGCATGCCAGAGT
CAAGAAAGACGTCCAGCGTCTCCGCACAGAGCTGACCGTCATGTACGCCACCCTCCGCGA
GGTACGCGACGCACCGCGGGACCAGCTTGACGGGCAGGTCAAGCTTTGTGCCGACCGCAT
CAGGGACCTCTCAAGTGTGATGCTGCTCTTCCAGACGGCCCTGGGGGAGGGGGACACTTG
ATTTCCTCGCCAGATCTGGATCCCAGGGACGACGTCGGTGAGTAACGGACCAGCTCATCA
ATCCTTCTTCCCCTGCACTTCTAACCTGGAGTTGTGTGGCCGAGGTGAGCAGAGTCACTA
TGCAAGGCGGTGGCCTGCGGGAAGGGGAACTGCATGGTGACAGAAGTATGTCAGAAGGAT
TCCAGGTGAGCGATTCGTGCTGCTTCCCATGTTTGATCTGTCAGTTATCTTACTTATTCG
TTGGGCAAGAACATAGATTGGCTAGTGGTTGTTCTTGCCGGTCTAAACAAAAACATTACT
AAGTTACTTTTCGAAACAGATCCACCTTGCCTGATCCTTGGGGAAGATCCTGGTCATGAT
GAAGATGCCAGTGACCAAGTGTTAGAAGACGAACACGAAGGGATAACAACAAGAGGACCA
TAATTCACGTGTTCCTGTCAAGGATTAATTCCCAGTCCCTTTTTACAGTTCATCATCCAT
TGCCGGGGAAGCTTTTGTCTATACTTCTATTATTGATTTAAATGTCCCCTATTCATCTTG
CTTAATTATAATTTTTGGTCACATGACATTTTTTCAAGTGTGATGCATACATGCAAGAAG
TGTGGAATTTTAAAAGTTAGTTCCTTGCACTAAATCTCTATTGATACACTACTAAGTGTC
TTATTCCTTCAACATATGGTTATACGTCTTACATTCATGTATTAAGGTCCTCTCTCTTTT
GTATCAGCTACCCTATATGTCCTCAACAGTGACATATACATGTCTCAAACTGCCATGGAG
AAAGATTGAAGCATGCATACGGACTTGCTGGACAAGCTGTATTTTTTGGTATGAACAGAT
TGGCTTTCTCGCAAGTAAAATTATTTTTATGGTTCTGGTCATTTTTACTTATATTCTAAG
ATCTAGAGAAATATATCTCTCAACAAATTTTGCATGGTGAAATAATTTGCATGTATGAAA
TTGGGTTAGTTTGTACCTAGAATAAACTTCGGATCATTATAAGAGAAGTAAATTATTTCC
TTATGAGTGAATATCTATATCTATATAATACACCAAGCTTGCTTGAGCTGATTACATTAC
TCATATATATATATATATCTGAACTTAGAGAGAATTTCCAGATATCATATTGCGTACGTG
CGCTTACATGGCCTAGCTGTTATGGTCCTCGAAGTTATTTTTTATCCATCTATATTTATT
TATTGTTGTGTTGTAAAGAGACGTTGCAGAACATTACCCCACTACAATTGCCACAATTGC
TTCATTGATTTTACAAGCTTACTGTAATTTGCAGTCACTTATACATTTTACAAGTGTGGA
TTGCATGATCTCACAAACATGCTACT