Contig Data
morexGenes
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Map Locations of contig_118293 (5616 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_118293

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_2059 7 1503 bp MLOC_2059.2 Available Available LOC_Os01g50700.1, FRAME:+2, EVALUE:1e-155, 13101.m05279 protein dehydrin family protein, expressed





CDS Structure of MLOC_2059






Contig Sequence (5616 bp)

>contig_118293 5616 assembly3_WGSMorex_rbca.fasta
TTGAATCCCTTATTGTCATTCCACTATTATTATGTATGTGCTATGTTANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
ATCTTAGTCGTTACATCCTCCTCCTCCTCCTCGAACAAATCCTCAACATCAGTGTCATCC
TCATAATGTAAGTGCTCCTCTTCTGTTTCTTCATCTTCATCTTCATCTTCGGCATCAGGA
ATCTTGTAATTCTCCAGGCTGAAAGGGTTGTTATTACTATTATATGCATTCTCCTCATCA
GTACTCTTATATCCCACGTGCTCCTCTTCCTCAAACACAACTTCCAGCTTCCCCTTGCTA
ACATTTCTACTCTCTTGTGTGCACATAGCAGCATGTTGAGTAGGTTGCATACTACTACTG
ATGATGTCCTGACTGTGAAAAACTACACCATTATCATCAACAACAAAAATGCATGCATCA
CTAAGATCATAGACAACAGGTGGTTCATATAATACTGTAGCCAAATCATCTACTCTTTGA
TTAATGTTGCCCTCTCTAAAAAATCCTGAACCGACAGGTGCTCTTGCCCTCAGTAACAAA
TTCAGCAGTAATGAATCCTCATACTGCTTCTTTAGTTGTTGCAATTTGATGTTTGTGTCA
ATCAGTTCAAGTCCATGCTCTCTGTCAGCTCATGTAGCAGTATTCTTCATGTGGTACAGT
TCATCACTGAAATTAAATCCTACTACTGTCAACAGTGCATACATATCCAGAAATGTGACA
TCTGAACTGCAAATCTTCCTATCCAAATTATGCCCAACATCAAAGTGAATCCTAACATCC
GATATAGCATCATCTAACCTACAATCCACGACAAAATGAAAAAAAATCAGTGCTTTACAA
CACAAACCCTAGCCCTCTGATTTGAACATGACAAAATAAAAAATGAAGGGAAATGATGGC
TTGTGGTGGGGTTGGCCAACCACATCTCGGCTAACCGCACCCGTTGCTCCATGGACAGGG
GGGCTCCTCCTCCTCTTCCTCATCGTCGGTGTCATGGAACGAACTGAAGCCGTCCAGCCC
CATGTGGTAATCGCTCCCGAGGCCAGGAAGGTCGCCGTAGCCGCCCACCACACCGCCGTC
GCCGGGGGTCGCCGCGGCCATCGCTTGAGATCCACGGGGAGAGAGGAGGAAAGAACTCGA
GCTAGGGTTCATGGGGGTGGGGGGGGCTTGGTTCGACCAAGCCGGTTAAGGCCGACCGCG
CCAGCCTCGTCCGAGTGAGCGCACCGGCACACGCCAATTGGCCACCGTGACACCTGATAG
GTGGGCCCGACATGTGAGATACATGGTCAATACATACTTATACGGCTATCAGTTCATTTT
ATAACAATTAGGTCGAGCAATGGTACTGAAATGCGACAATGCAGAGATGGTGGAGTGACT
CGTTCCATGATGGGCAAATGTGGTATGTCATGCAATTAACTCTGAGAAAACCGGCCAGTC
CCTCCTCGGCCTTTCCGATTCTTGATTGCCCTACCTCTCCCCGATGAGATAAACCGATCC
CGGTAATGGTATCCGCGCCATCCGCCCCTCCCATTCGATCATCAGGTTGGCGTTCGTCCA
GCTGTAGCTGCAGTACGATCCAGGAAGCGGAGGAGAGGGAGCTGCGATGGTGAAGGACAC
CGCGTACTACGACACCTTGGGGGTCAGCACCGACGCCTCCGCCGCCGAGATCAAGAAGGC
GTATTACCTCAAGGTGCGTGCGTAACCAATCCTTGAGCGATCGAATGCTGACGGCTCCCG
ATTTAACTGCGCTGACGATGTTTGGGTTTCTACAGGCCAAGCTGGTTCATCCGGATAAGA
ATCCCGGGAACCCTGATGCGGCGAGGAAGTTTCAGGTACGTTTTCCGGCTTGTGTTCTAT
CGCGCCGTGTGTTCCGCCCTCCCTACTCCTGTTACTGGATTCAGGAACGCAGAGCGAGAG
AAAAAGAAATAGATTTTCCCCTCTGGTAGTTTGGTTGCATTTTCTGTCCCTGGTAGTATT
GTTTTATATCTCATAATAGGATTATTTATATTGCACGCATTCCAGTCGTGTTCAAAAACA
AAGTCTTCAAAATATCATCGCCGCAGCCATTATCTTTGTATAGACTTTAGAAGGTTACTA
CCTCGGTACAAATACTGATTTAAATTGCTTACTTACTGTTGCAAGGAATTAGGTGAGGCC
TATCAAGTCCTAAGTGATCCTGCGAAAAGGGATTCTTATGATAAGCGTGGAAAAGAAGGT
CTATCCCAGTAAGTCCTGTATTTGTGTGTATCATCTCCCATAATATAAGACATTATTACA
TCCAATATACCCACGTAATGGATGTAATAACGTTTTATATTGTGGGACGGAGGGAGTATT
TACCTGTATTGAGATATAAAAGCTCAACACCTTTTTGGTATATATAACACAGAACAAACC
AAGCTACATGTGCATTTTATTATCCTGCTGTTAGACTTCTAGTTGAAGGTGACGCTCAAT
TTTGACGGCAACATTTCAGGGATAACATGATTGACCCGACTACTGTCTTTGGGATGCTTT
TTGGGAGCGACTATTTTGAAGATTATGTTGGTCAGCTTGCACTGGCATCCGTGGCTTCGG
TGGAGATCGAGGAAGATGCGGACACTCCGGAGGCAAGGGCAAGGGCTCAAGAGAAAATAA
AGGTATACTGCTCCCATAATAGTTAGTCACCTCAGAGGCAGCAGTTGCTGCACGACACTG
CACCATAATAGCTTCTCTGGGTTGCAGGCCTTGCAAACGGAAAGAGAGCAGAAACTTATT
CTGAGCCTTACAAATCGAATTCAACCATACGTCGATGGAAAACACAAGGAATTTGGTGAT
TGGGCAAGTGCAGAAGCTGAACGCTTGTCTCAAGCTGGTATCCCCGTTTTCTTATAAGCG
TAGGAATTTCATTCAAGTTATGTGGCTGCACATATGCTCATTTTTGTGCCTTCCTTTTCA
TGATTATACCTTCTATATTTATTTTTATTCCTTGTTGTAAAAAGTGCTTCTAGGACACTT
AGTTGCTCAAGTATGTAGCATGACATCCAGAAGGCTCACTTCCATTCGTTATGAACATGA
CACGCATTCCATTAGAGCTTATCATTGGGTTCATTCGTGTAAAATAACATTTCAGCTTTT
GGTGAGGCTATGCTTCACACCATTGGCTACATATATGTTCGACAAGCAGCAAGAGAACTT
GGAAAAAGTAAAATGTATATGGGCGTGCCATTCATTGCTGAGTGGGTAAGAGACAAGGGC
CACCATGTAAAGTCACAGGTTAATGCAGCTGCAGGTACATCTGAGTATGTTCTTTTACCT
TGGTCATTTTCCTTTGTGTTAACAATGAGCCTGATCCTATGGCAAGCTCTATTATAGGTG
CAATTGCCCTGATACAATTGCAAGAGGGGATGAAAAAGATTGAGGATGGTGACAACAAGG
AAGAGCAGCTACTGAAGAGTATTGAGGAGAAAAAGGATGCCATGCTCAATTCTTTGTGGA
AAATTAATGTTGTTGACATTGAGTCAACGCTATGGCGTGTCTGTCGAGCAGTAAGCACTG
CCCATCTCTGTTCATCCCTGACGTTTACAATAATATCATGCATGTATGCTTATATTTGTA
TATTCATCATGTTCATGTGTATACAATAAATAATCTTGGCAGATTTTTCACGTTATCGTG
GTACTTCTTTTTCTAGTTTTTGAGAGAGAATACTGTCTCCAAAGATGTTCTGACGTCGCG
AGCAAAAGGATTGAAAAAGCTGGGGACAATATTCCAAGTAAGTTACTTTACCCTTCTTAC
TTCTCCAGGCAATGTGTTAGGACAAAAATTACAAGCTAATCCAAGTAAAAAAGACCCCTC
TGTTTTTTTGAACTGCTTTGAGAGTTAATTTGTCTTGAGTAATCCATGGGTGGACATATG
GACTGGAACTGTGGAAACCAACCCCTATGTAGAAACAGCTTGGAAGATACTCCCTCCGTC
CCGAGATTCTTGTCTTAGGTTTGTGTAAATTTGAATGTATCTAAATACTAATACATGACT
AGATACATTCATATCTAGACAAATCAAAGACAAGAATTTTGGGACGGAGTAAGTATATGT
TATTTATCTAGAACAGCATAACGAAGTTGATATTCTATAAAACTGTACCAAGGTCAAACC
CAATTTCATTTCATAAATATTAGAAAAGCACAAGGTAAAAAAAAAAAACAGCAAGAAATT
ACACTATTATTGCTGCATTGGTCTTTTTGTATCTTTCAAATGCTACTGAATCTGATATTG
AAGTATTACAATTTCATAGAATATGACATCCCACCCCTTAAATATGTTTTTTTTTATAGA
ATATTTAGGACATCTATATATGGTTTGGACGTCGTTTTTTATGAAGGGTGTGGTTTCCAC
ATGATATTTTCCTAGGATGATTTGCCAGGATGAATACATCACATGTGTAAGGATCAATGT
ATGACTGCGGAGAAGCTTACCTTTCAAATAAGACATGATTTTTCACTGTCAAAAAATATT
ACCAAACTGATTTTGTTGCTTAAAAAAATATTGTTTGTCTTCTACTTGCATCACTCCATG
TATCTCAAGCAAACACGAGTACACAACAGATTTATGCGATTCCACTAGGAGGGCTTCAAT
AGGCTTAAGCCTACCCTCCAAAAACCTATTTCAGCTAAACATACGAGTTGACAATTATAT
TCAGGTGCTTTACATGCAACAATTACAATGCATTTGCTAATTAGGCTTAGAAACTTGATG
TTTTAAGCCTACCCTCCATTGTCATGCTAGATTCGCCACTGCTTGCAATGGTTTGAGAGT
CAGAACCCATGAAGTTTTAAATTTAAGGGTCAACCTTATTGATTTTTGGAGTTTATTTAG
GTAGCAAATGCAGACTTGGGACGACCATAACCGAGGAGCATACCTTACTTGATTTACTGG
TGTCACTCTTAATTAACATCTCATCTTTTTAGTCCTCAGTTTTGGTTTCTTACACCTGAC
AGTGTGTTTATCTGTTAGTAGTACTAATGTGATAGAGTGATTTCAAATCCATCCCCATGG
TTGCAAAATCATACCGAGTATTTTTTTTTTGGGAGCAATCTGGAATTACATTTACCATTT
CCCATGTACAATCAGGGCGCGAAATCACCCTACCATCGCGAGAACAGCTTGCGTGTTGAA
TCTCGCACGGTGGAAGAGACGCCGTCGCACTGATCGGGATGTATCCTGTGCCACCAGCGA
CATCCCACGGCTGAGCTTTTCTTCAGGGGATCGTCTAGAGTCCATGGTGGTTCTTTCTTG
TGATCTGTATAAACTCGAGGCATCATTCAGGACATCTTGCTGTGGTAGTACTATTTGTTG
CCCTGCAACATGTTGATATCGATGTTCTTGGAAAAATCATGTCGATATCGATTAAAGGGT
AATAATATTTCAGGCACCGTCTATATTTCAGAATATCAGCAAGTTTAGCGGTAATTCCTA
TCTGAGCTCAGGCTCATCTGCTCACTATGAACAGTAAATCCAAACGAAAAAGCAGAAAAT
TAGAATAACTAGACGATGCCCCGCGCGTTGCGGCGG