morexGenes - Barley RNA-seq Database

Contig contig_118104
Source Contig contig_118104
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_118104 (9299 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_118104

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_2039	1	673 bp	MLOC_2039.1	Available	Available	None
MLOC_2042	1	856 bp	MLOC_2042.1	Available	Available	None
MLOC_2041	1	539 bp	MLOC_2041.1	Available	Available	None
MLOC_2038	1	681 bp	MLOC_2038.1	Available	Available	None
MLOC_2043	1	258 bp	None	Available	Available	None
MLOC_2037	1	427 bp	None	Available	Available	None
MLOC_2040	1	547 bp	None	Available	Available	None
CDS Structure of MLOC_2039

CDS Structure of MLOC_2042

CDS Structure of MLOC_2041

CDS Structure of MLOC_2038

CDS Structure of MLOC_2043

CDS Structure of MLOC_2037

CDS Structure of MLOC_2040

Contig Sequence (9299 bp)

>contig_118104 9299 assembly3_WGSMorex_rbca.fasta
CAATGATATCAACGTGCTTCAACATTTGCCGGTGTTTGCAAGGCTTGCCGAAGGCAACAG
CCCGTCGGTCAATGTTAACATCAACGGTCACAACTACAACAAAGGATATTATATAACTGA
CGGAATCTATCCACAGTGAACCACTATTATGAAGACAATTTCCAACCCTATCGGAGAGAA
GAGGAAAATATTTTCCCAAGAGCAAAAGAGTGTTAGGAACGATGCCGAGCGTGCCTTTGG
TGTTCTGCAATCTCGATGGGGCATACTTCGGTATCCTGCTAGAACTTGGAGTACCAAGAA
GTTGTGGAAAGTGATGACTGCTTGTGTAATCATGCATAATATGATCGTAGAGGATGAGCG
CCCGAAACATCTCCATGATCAAGGATTTGAGATTCAGGATGACAATGTGGTGCCTCAGAA
TGACGGAGGAGCGGCATCGTTTGCACAGTTCACTTAATTTCATCATGAAATGAATGCGTG
ATTGTGAAACTCATATTCAGTTGCAAGATGATTCGATTGAGCATACGTGGGATCATGTTG
ACAACCAATAGATATTTTTTTTAAGTCAATTTAGTTTTTATTGGACTTGTAAAGCTTTGC
TATATTTTATTTCGGTTGTGAAATTATGCTATTTGTTAAAAACCGACGGCTAACCGGCCA
TACAGAGAAATATGGGTCGACGCGTTGGACTCAAACCCAAATCCTAAAGTGGGCGGACAC
ATAGCGGACAGACGGCCCAAACGCGAACAAAATCGCAGTCCGTTTGAATCGGCCGGATGG
AATTACTCTAAAATTACACATCATCCGTATTTACGGACTAGTCCGTCATATCCATGGACA
AATACATGAAGAAATTTGCGGATTGTTTGAAGATGCCTTAAACAGGCGAGGTTTTAATTT
ACTCAGCACGACACATGAAAGAGCAGAAAAGACCACGTTGGCTAAAACTACTCAAAATAA
GGAGTAACATAGAGTAGTAACATATATATGTTACTAGTCTAAGTTACTACCTCCACAGTG
GATAGTAACATTAATCCTATCATTTATTAGGCTATAGACTCATCTTGCCTTGGTATCTGC
TATGTTACTCATAGAGACAGTAACATGGTAAGAGCATGGTTAATAGTATAGCCAACTGTT
GGCTATTCTTATAGCTAGCTTGTACAATAGTTGGCAATAAAAGAGTACTATTTTTATCAT
ATATGGCTCACCTTTCATTCTCACAAAACACCTAGAAGCACGTGATAGAGCTAGGTCTTC
ACGAAACCCTTTCCTCTCCTCTTCTCTCTCATCCAACTCAATAAAAATATAGTATTTTAA
TCCTTACAGCCTGCTGAGTGCTTAGGTGACACTTATGTTACTATCTATGTTAGTCCCGTT
ATGGATAGTCTAAAGTGGCAGACGACGCATACTGACGGGGGTACAATGCCCCTTGTCACA
AGAGGGACTACGACCCGGCCAAGAATTTCTCAAATCAAAAAGGGGGAAATGATAAACTAC
TCACTTCCTTCCAGCAGGCCTGACATGGCCTAGAACGGAGGTAAACTAGAAGTACTATAC
GGTTTACATAGGTACTACCAGAACGGAGGTACTAGAAGTACTTACATAGGTAAGTAGTAG
AACTCGGTACTCCCTAGGCTGGGAGCCACAGCCACAGGCTTGTCCGATCGAGAGGTGCGT
AACCGTGCAAACAGCCACTGCAAAGGGGCCAAATGAGTTCTTCGTTCTTTTTAAGCAAGA
AAGGAATTTGCAGCCCCAGCGCACAAACTGAACCTTTGGTGTGGGCGTGTGGCGATCGAT
AGGATGCGTTTGACAAATGTTACTAAGTAAAATTTAGTTGCAAGTACTAAAGATGATTCA
AACCAACTAAATCTGGAAAAAAATTACAAGAGATTACACGTACTCTTGGCGTGAATGAAC
TAACACGGATCCACGACTTTGACCTGCAAAATGATACCACAAACGAATCAATCCAAGTTG
AAACATTTCAGATCTGAGGAGACACGAATTAAATCCCAGCCAAAACAAGAATCGAATCTT
GCATGTGCAATACCAAAACAACGAAAAATCAAGAATCCCAGTAGCTAGTCCGCCTCGCGC
GCCGCTTAGCCCCCGTCTCATCACACCACGCGGTTTGGGCTTTCATCGGTTGCGCTTGAT
GCCTGGCACGCTCTGTATTCGGTCTAATCATCTCTTTGAGCATATAAACTCGGCCTAACC
CTTGCATACTTAGCAACAGAAGGAAACAACGGCCCAACTGAAAGGACCCGTCGTCTTTGT
CCTCTGAGAAAGCAGAGCTGTGGAGCTCCTCTAATGGCGCCGCCAAAAATGGTTTTAGGG
CAACCCAAAATGGTTTTAGGATATCTAGAAAAGAGTTCTATACAGTAGGAAGTATTTGTA
ACCACGGGATCCGTTTAACCAATTGGTATACTTTGGCTCCTTCGCGCGCCTGGGACGCCG
CCTGATGGGAACCAAAACGATACTATGGAAGCTTGGTGATTCAGATCTGGATCCGTCCAA
CTTTCAACTTTCAAGCCGGAGCTAATATAACGCCTGTGTTGTGTCCGCAACCAGCAGGAG
AGGAGAACTGCAAAACCAAAAACCAGATCTGGGAACCGGTCAATTTGAGCTCACCTGACA
GCGGTAGCGAATAACAGAATCGCCGGCACACAGGCCGGAGCCGACGAGCCAAGCAACGAA
CGAACCACCGCCGGAGAAAGCACAAGCCTGAACCATGACAATATCCCTTGTTCCTCCGAC
GGTACGGAGTGTGGCGGGGGCAGGGAGCGAAGAGCAGAGGAGAATGGAGTGAGGTGATGG
TTTGGGGACTGACGGACTGTCCGGGTAGTAGTCACAGTTTGGGCACTGTGTAACAGGGCG
GCGGATCGTGAGTTCGTGACGGGCGCAAGATCTACCTGCTAAAAAGTTAGTGTGACGTTA
TCTCAGTCGCTCGGGATAGGCGCCGGGCTCCTATTCTCACTATTCTCGGTGTATTCCCTC
TGCCGAAGTATATATTTTCTTAGCCCAACTTCAAAGCGTGATCTCATTTTGTCCTTTAAA
TGTAAACTGATAAAACAGGCCTTTTAATGTATGGTCATAAACGGACGAAGGTTCGTTTTC
TGTCCCTTTTGATCTATTCCCGGCCCAAATTTAAGTCGAGCTTGCGACCGAATGGACAAC
GCGCGAACGGACGGGACGCACGCCCTTGTCCTTCCTGACCCGTCTGTCGCTGGCACAGGC
GACCACTTTCCCTCTCTTTTCTCCAAAACCCTCCCGCGCCCCGCCCTCCACTCTCTCACG
CCCTGCCCTTCACCCTCCCTCCATCCACCATGACCGACAATGCCAATCCCTGCGATCCAT
CACCGGCCGCCCGCCTCGCTGCGAAGAAAAAGAAACCGATGAAGAAGCCTCGATCGAGGC
TGACGTCGAAGGAGGCCGCCAAGCTGGACGCCGACTCGGCCAAGAGGAGGAACTGAAGGA
GTGTCGCGACGAAGAAAAAGGCGACCGCCGAGTACGCTGCCAAGTGTTTCCTGCGGCGTG
CGCCAAGCCACCCTCGACGACAAGAAGTCCATCGTCTCCAAGGCGCACGCCCTCGGCCCT
CCTCATGTTGAGTATAAGCCGCCCCACGCTGGCCAATCTCTCCCACGCTGCCATGGCCGC
AGCTAGCACCGGCTCCTCAGCCCATCGCCCGCCGCAGCACCGTTCCCCGAACGCGTTCGT
CATACATGAGATATCGGATGTTTGTGCTCCGCCGCTGCATGACTATGAGCAGACAAGATT
CATTGCATTACTGGACTGCGTGGTGGTCGATCTACGTCCGACAAGAAACGTGATGCGTCT
TTTATAGCGTTGCAAGGAACTTTGGAGACCAGGATGAGCCAAAAGAAATTGCATAAGGAG
AGAAACGACAAAGGAAAAAAGAAACAAATGAAGATATATCTTGATTTTAAAAGAACAGAC
TTGACATGGAGGAGGACGATCAGATAAGGTGGGCCGCCAGATATAAGTACTCTATATATA
ATATACTCCACCTACCGTATAATACGGTGCATTGTTTTTCCGGAATTGGAGAGATCCGAG
ACAGAGCGGTCTAATCGTCACATGCCACGAGGATCCACGCCCTTTGTCAGTGGCCACCTA
AAATTCAGCAGGCTACGCGACACATGTTGCGCTCTGTTATGCACGTGCCGACGTGTGTAC
GCGTGTACTACTGTACTATACTACTCGTATATTGCTGTGAGGCCTGACGGGTACGGGTAG
CATCAAATACCGTATATTGCTGTGAGGCATGACGGGTACGGGTAACATCAAATACCGCGC
AATCTTGATTTTTTTTATTATTTTTTTACCGTGCAATACCAATTGATTTTGCGAAACGCC
TCTTTGTCCATGGTATATGAGTACCGCGAGGTACCCTAGCCCCTACCAGTATCAACGTGC
ATAGGCGAGACTTTATACCCACGGATAATAGTATTTGTACACAGAAAAAAACATGGATGG
TAGGGCAGAAGTGAGAAATTCCATCCATGTGCTCTCAAAAAGATTAAAAAAAAACCACCA
ATGGCTAGACCAATAAATATAAAAATCCTCTAAATATGCATTTACGGCACTAATTATTTC
GTTGAGTGAAAAATCATCTAGAATACCCCTTTTAAAAGTTTTGAACTCTCGTTTTCTGAA
TCATGTCCATTAGACAAAGTGCAAGGAGACACCCTGGTCCAAAAATATTCGAATGATGAG
GAGGAATGAAGTATATGAACAAGGAAAGTACGAACATGATTGTCAATGTTGTCCTCCGGC
CTTTACACATTTTTTTTACAAATCATTGATGTAACATGCCGATCCTATTAAAATAAATAA
GTAAAAAAGAAAAACCGGGGTAAAACCGTGTTAAAAGTCTTCAAAATATCATATTTCGGT
GAAAGTTCTACTAAATGGTGTAATATGTGTCACAAATATACAACTAAAGGGGAAAAGGTG
TAATTTACTCTATAAAAAATAATTCCTACTCCCTCCATTTTTAAATATAAGTCTTTTTAA
AGATTTCAATGCAGACTAGGTACAGATGTATATAGACGATTTTTAGAGTGAAATTCGTCC
ATTTTGCTTCGTATGTAGTCTATATTAAAATCTTAAAATGACTTATATTTAGGAACGGAG
AAAGTATGACACAAGGGTTATCATCCAATCACAACGGTCCATCACTAATTCCCTAGAGGG
GGCTGCTATAAATCAGCCGGATGATTTCTCGAAGAAATAATCCGCCCATTCAATCCTTGG
ATTAGCATGCTGGTGGCCGTTGGATCACAACAACTTCACGGCAGCAGCGAGCACATCAGG
TTCAACACAACGCCATTGAATCCTCGACGAAGCTCCAACGCAACACTGAGGGCGTCCGGC
GAGCTCCATTGCAGCTCTGATGGAGCTTCAACGCAACACCGACGCTCCGGCCCAGCTCCA
TTGCAGCCTCAGTGGAGTTCCAACGCAGCGCCGGCGGGTGTGATGAAGCTCCATCGCAAC
TCCGGTCGAGTTCCATTGAAGCCCTGACGGAGCTCCAACGCAACGTGACGACTCCGGTGA
AGCTCCATGGCAACTCCGACCGATATCCATTGCAGCCCCGACGGAGGTCCAACGAAGCGC
CCACGGGATGAAGCATGGAGATGAAGCAGGGGAATGGTCGCAGGATCATAGCCATGGCGG
GATGAAGCAGGTGGTCGTCGGAGCCATGGCGGGATGAACCAAAAAGAGATGAAGCGGGCG
GGATGAAGCAAGGAGATGAGGCCATGGCGAGCCCGTGTCGGTCGCCTGGTGCAATACAAC
GATTGGGCGAAGGTAGCAGACTAGCAGCGGTGGCCGCAACACTATGCGATGACGAACGAC
GAGCGAGAGGATTTGCACAGGAAGAAGAAGGCTGTGAGAAAACGTGTGGGTGAGGATCTC
GCGTGAAGGTCACGCTGTGAGGTGAGAAAGCGATGGGCCTGATCCAAAGAAGACACACAT
CAAGCGAGCGTGGCGGTTTATGGAGTGGAAAATCAGTCAGTTGAATCTCATCGTTTTCCT
TCCCTAAATCGACCGCGTCTCAAAGGCCCGTAGCCGCCACCCCGCCACTTCTCCTCCATT
ATATCTAACTCCTTGGAATGACGAAATCTCAACTCATCACCTACTGTCTACTAGCTAATG
TCCATCCCTGACCAAGCAATCCAAGTTCCGACAAGCGACTCCCACTACTCATGGCTCCAA
CCATCAACTCCTGACGTGTGGGGCCATTTTGGAAGTGGCCCAAAACACTCCTAGACTTGT
CGCCCAAGGCCTAACACACACACTCCACACCCGTCCAAGCGCCCAACACACACACCCCGT
ACCCGTCTCCACCGCACAACACACACGCTTCACTCCAATGGTCGCCGTCACCCAGCCCTC
CGCCCGCCGCGTCGCAGTCCCGCCGGTCTCCACAGCTTGACGCCCCCTCCAGCCTCCCTG
ACGCCCCTCCCCAACACCCTCTCCAGCCTTCCCAAAGCCCGGCTCCAATGGCTGCCACCA
CCTAGGGTTGGTGCAGACACCGCCGGCACCCAGAGTTCTGGCCTTCCCGGATCCCCTCCG
GTCTCCCCAACGCGTGCCTCCAATGGCCGCCGACGCTAGGGTTTCAGCCTCCCCGATGCT
CGCGCCACCTAGAGCTCTGGCCTACCCGGCACCCCTCCGTGACTCCCTTCTCCAGGCTCC
CCTCCGTGATGCTCTTCTCCAGCCTCCCCGACGCTCCTCTTCGACCATGGTTGCATCATC
CGCCCATATGCTAGTTCCTCTCTGTGATGGACAAGTTCTTCTTGCTAGTTCCTTAACTAA
CTAATGCTTTTGTGCTTAATTGTATGACTACTCTATGCCTAAAGTTAATGCAATTTGTGA
TTAGAATTCAGATAATTGTGTGATTGCTCTTTTGCCTAATTAGTTGAAATTACTACACCA
GAACAAGGCTACAACTTCATGTTACTTATGTTTTCATGTTACTAAAAGAAAATGAAAAGC
ATGGGCTTTTTTATGTGATGACTCAAACTAATTTATATCATGCTAATATAGTAGTGTGGC
TGCATTGAGTCATGTCAATTTTGTGTCAATGTAGGTCAAACTCGCCTCCTTATAAGATGA
TCGTGACATATGGGGCACGTTCTTACAAGAATTTCAAAGGTGAACTATGCATTGTGTCTT
CTTGGAGTTGGGATCTCATTTGCAGAGAGGTAGAGTACTTACAATCAGCTTGTGGGTCTC
GTGCAAAATAAATATCCGTGGGGAAATGACGAGGTTGTTGTACTTTCAAGGTGGAATAGG
TGTAGGAAATATTTTGTGCTAGTTCACGGTGATGAAGATGTGGTGAGCATGTATGATGAG
AATGAGGAAGACAAGATTAGATGAAGGATTTGACTCATGTGAAGTATTTTGTTCATATTT
AGAATGTTTTGACCTATTTACAATGTTGTTGGTCATGATTTTATTATTGTGCTTACTTAT
GCTCTAAATATTGTGTAATTATGTGTGATGTTAAGATTTTCGAATAGGTCATGCCAAATT
TTTCTCTTTAGTGTGCGATTTGTCATGATCTTATTACTATGTTTATTTCTGGTCTAAATA
GTGCGCAATTATGTGTGTGATTGTTACATTTTTAATAGATCATGCCAAAATTTCCTTTTT
TACTATGCTACTCGTCATGAGATTACTCTAGTGGTAAAAGCAATATTTGGGAAAAATGTG
TGGCAAAAGCAAAACGAAATAATTGAGGGCAACCTGGTCCTTTTCTTGCTCCGTTTGGTC
AAAATGTGCATTGGCCTAAGAGAATGACATTTGTGATATGTTATTAAAAGTTAAGAGTGC
AGAAGTGATAGGTCAAATTCTAGAGTAGCATCAACAAAATTGGCAAAAGTTAGAGTGGCA
AAAACAAAATTTTCCCTAAATAATTATAGTTGGAGAAAACTTGATTAGTTTATTCAACTA
CAATTATTTTGGGACAGATGGAGTACTAATATGTACGTGCTTTGCACGTCATCTTATTAT
ATAAAAGCATGGTAGTAAATTAGCTTTTTAAAGGAAAGGACATATGTTATAAATATGTTA
GAAATTTAGAATGGGAGGCTTTTGTGGAATCTTTTTTAGCTTCACATGTAAGCAATACAA
TTATCGGGCAAAAAGTTTTCACAAATATCTTCACCATAGAAAATTAGGCAAACTCTTTGC
ATATTTATTAATCCTTTTATGAAGTCCATGAGTTCATAAAACTCAAACTCTTTTTTTGGA
ATAAAATGAAGCAAAAAGACGAACGCTGGTTAATAATATATTTTCCCCTTCTCAAACTCA
TGTCAACTACTCCTTCTGTACCTTAATAATTGTTGTTGAGAGAACTAGTAAGAAATTAAA
AAGAGCAAACCTACTGTTTCAATGTCGTTGCACATTTTTGTTCGCATTCTAATTATCCTA
GGCACTATGCTGCTATTTTTTCAGAAACCAAAAAAGGTCACCGCACATACAACATTTTAA
TGCTATGCGGACATGCACATGCACGCTTCTACCAGTTGAATATTGTCTCTCATCGCTGCG
ATCAGACTATTATAGCTGCGTGTGCGTAGGATTTTTTGTTCTTGAGAGCAGCATGTGTGT
CATGTGTAGTCCAGCTCACACTGGAAAGATCTGGAGTGAAGCGTGGTCATATGGCAGCCT
TGGATTGTGGGCCATATAGCGAATCCCATAAACAGCAGCCATGGGATTGCCAGATCCAAC
GGTAGGCGTAACACCACATTCTTCTCGAATTTCGTGGAGTCAACTAGAGCCGTCAGATTG
GTAAGATCCAATGGTCCATATAATGCGTAACTGGGACACTGTATAGTGGTATAGATATAG
ATATGTCTCGGGAGTTGCCGTTGGCTCATCAATAGTCTAGAACCAACACTTCAGAAAGGA
AAATACTTGTCATTTCCTTGATTAGAAAAGAAAAGTAATATGTAAATAGGTGTGAATGTA
TTCTATTCAGATTTCTAAATTTTGTAAAACATAACTTTTAACTCGAACATCGGAATTCAG
ATCCGTTTTCGTCATTAAAATCTTCGCGTCGTGCTCTTCAAAATTAGACCCTGTATGGAT
ATGTTTCGATAAACTTTTTATGCAATTTAGTTCCCATTTTATGCAACTGTCTAGTAGCCC
ATGTGCAACTAACTAACAATCGATCATGTTCATACTCAACGCAAACACCAATCAATATTT
AGGTTTTAACACTAATCCCGATGGTAGAGAGAGCGTGCGATGGTGATCACATCAATCTT