Contig Data
morexGenes
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Map Locations of contig_117571 (2111 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_117571

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_1974 1 486 bp AK369875 Available Available None
MLOC_1975 1 1163 bp MLOC_1975.1 Available Available LOC_Os07g02490.1, FRAME:-2, EVALUE:9e-77, 13107.m00173 protein retrotransposon protein, putative, unclassified





CDS Structure of MLOC_1974






CDS Structure of MLOC_1975






Contig Sequence (2111 bp)

>contig_117571 2111 assembly3_WGSMorex_rbca.fasta
GTTATTACGAGGAAGATCTGAATATGCGTAGGANNNNNNNNNNTTTATGCTACGTTACCC
AACAAAGTTGTCGTGCAAGCTGCGCCCAGGGATGAATGCATTCTGGTTCGCGCTGACGAG
GTCATTGAGCTTGGGGACGAGGCATAGTGACAGGGCCTTAGAAAAGACCTTGGCCACGAG
GTGGATCAGGCTTATGGGCGTGTAATCGGCAAGGCCGGCTACATCCGCGCGCTTGGGAAT
CACTGTGAGGAGAGCCTGGTTCATGGAGCTGAAACCGCGCCCCCTTAGCGCGTATAGCTG
CTCGAATATGTCGAGGAAGCCCTGTCGAATAGTGGGCCAGCAGGTGTGCAGGAACTCGGC
GGTGTAGCCATCCGGGCCTGGCGCCTTGCGCGCCGGCAAGCGCTTAACCGCCTGCCAAAT
CTCCTCTGCGCAAAATGGCGCATCAAGGTCGGCCAGGTCGGCCGGCGTGATGAGGTCTGA
CAGATCGAGGGTGCACTCTCGGAGCACCGTGGAGCCAAGCAAGTCGTCGAAGTGCGCAAA
GGCCAATGCTGCCATGTCGCTCGGGCTGGTGATCGTGCCATCGGCCACGGCGAGGCTGTG
AATCCTGTTTTTCTGCCTCCGGTACGTGCATTGGCGGTGGAAGAAGGATGTATTGGCGTC
GCCGTCTTTGAGGAATGCGACGCGTGCGCGCTGGCGGGCGATGGAGCGCTCGAGGGANNN
NNGGCCAAGGTAGGATGCTTTGATCTGTCGGCGGAGCCAATCCTCATGCGGGGAAAGCAT
CCTCCTCTCGTGCGCAGTATCGAGCTTGAGGAGGATTTCTCTAGAAACTGCAAGTTTTAG
GCGCACGTTGCCCACAGTTTTGGAGCTCCAGCTCGTCAGCTTTCGTGCAATAGCTTGCAT
GCGAAGCATGAGACGTCGGAAGGGATCGTCGTCGTGGACAGAGACCCAGGCCTCCGCAAC
TATGTCCTGGAAGCCATCCAGACGAGTCCAGAAGTCCCCGAAGCGGAAGCGCCAATGGGT
TGGCGCAGCGGGGGACCAGTCGAGCAGGAGAGGGCTGTGGTCGGAGACGACCAAGGCGAG
GCAGCGCAGGTGGCACTCGTCGTGGAGCTCCTCCCAGTCTACAGTGCATAGGATCCGGTC
CAGGTGGACAAGTGTCGGCGACGATTGCCCGTTCGACCATGTGTAGCGGCGTACATTGAG
GTAGACCTCTTTGAGCGCTAGGTCATTGAACACGCGACGGAAGCGGCCCATCATCCAGCG
GTTGATGTTGCCATTGTTCTTGTCTTCGTCCCGGTAGATGAGGTTGAAGTCGCCACATAG
CATCCACGGGCCAGGGCACTCAATGCGGGCGTCACGGAGTTCCTGCAGGAAGGCGATCTT
GCCAGCATCGTCTTGCGGGCCGTAGACGGCAGTGATTCACCAGGGAGTGCTAGCTCCGGC
CGTGGTGGAAACCTTAGCAGATAGCGTATTGGCGGTGAAGGAGGGATCAGTGATGACCAC
CTCGCGGCTTTTCCATGCCAGCAGGATGCCGCCACGGGTTCCAACCGCGGGGAGGTAGAC
GTAGTCATCGAATTCCGAGCCTAGGGTCTCGAGGACAATCGACGAATAGATCAATTCCAT
CTTCGTTTCTTGAAAGCAAGCGATGGAGGAAGTAGTGGTTACAAGCAGAGATCTAATGGC
GAGGCGGTGGGCGCGCATGTTCAGTCCACGCATGTTCCATACAAGGATCTTGGGGCCGTA
ATTCATGGGAAAAGGTATCGACGGGAGGGCAGGCCGTAGGGTGTAGCTACGCCTCGATCG
GGCTGCCCGCGATCACCGTGGTGATCGGCGCCGTTGTGGGATCGGAGGGGAGCTCACGAT
CAACCAATGCGGCTATGGAGGCGAGGACGGTGGTGGGGAGCGGGGTGGCGAAGAGCCCGT
CGTAGGTTTGCATCTCGGCNNNNNTGATCCTCTGGTTGATCCCGACGATTCCCAGTGTGC
GCAGGATGTGGACTTGTGCACGCCGCTCAGTCGTAGGGGGCAGGCTGCCTTGCATGGCAC
AGATGATGCAGAGCGCCCGCGTCGAGGGGTGGAAAAGCTTGGCGGGCGGCCACGCTGCCT
CTTTCCTGGGG