| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_117436
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_1956 |
1 |
1283 bp |
MLOC_1956.1 |
Available |
Available |
LOC_Os05g43040.1, FRAME:-3, EVALUE:7e-167, 13105.m04530 protein tetratricopeptide repeat domain containing protein, expressed |
CDS Structure of MLOC_1956
Contig Sequence (3546 bp)
>contig_117436 3546 assembly3_WGSMorex_rbca.fasta
TGTCCGCCGCATCGCTTGACTCGTCGACGACTCTGCACTGCCGCTGCTTTCAATCTTGCC
AAGACTCCCGAGTCCTGATGCTGCACAATTTGCCTTCCGCGTGCGTGCGTACGATCTGCT
GAATCAATCTGATGCAACCGCCTCGTCCGATCCAACCAGCCACCTCGCCCTGCACTGCTT
GCATGCGTCTCGATCGGATGGAACCGATCTCGCCTAAAGCCCGAACAGAACACACGCCGG
CTGCAAAGCACATCTTGCCAAGACTCTGCCTATTTCCGATCACTTCTAATCCAGCGTAGA
ATTTCCTCGCCAAGCATCCACCACGAGTGATCCATCTCAACGAATTCTACTCCACCTATA
GATCAACCACCACGGCCTCTTTGAACCTTGCTCATGATACCACTTGTTAGAATAATCCGA
GTCCACATAGTTGATATATCGAGGATCAAGCAATCACACAAGCACGACACCGAGATTTAT
TAACGAGGTTCACCATCACGCCTACATCCCAGGGACCTGACTACGGGCGCTCCTCCCCAT
AACACCATCACAATACCGCACACCGGCCGTCTGGGCGCCGGCACACGACGCCGGCTGCCC
CCGCGTACCTATGCTATTATGTTTACTTAGGTTACATCGTGTGTCTACCTCCGGTATATA
TGAAAGACCTAGGATATAAGTGTGAGAGACCTAGGATATAAGTGTTCTGTTTGCACACGA
CTCCATATCCTACCTAAACACAATACAACTACAAGTCCAACTGTAACCTACCTTGTACAC
AATATTCGACACAACTCTAACCGTATGAATGTCATTCAGTTGGTGTGTGTTATACTTGGC
AGTTGCATTTTTAGGGGGGAAATGTGTGGTTGAAGCAAGCAATAAATGACATGAATTTTC
AGATAGCTCAAAAATCAAATTAAACATATCTTGGGCGAAGAAACCACTTTTCTTTTTCTC
TCAAGGGAACGCTTTGCATCAACCCTGGCTTATGATATCTATGATCTATCCGACCTCTCT
TCCACACTAGTAACATCAACAACAGCTCCTATATACATGCACAACAACTTCTATTTACCA
CAAGCAAATGAACAAAAACAGATGAAGTAATGAATCAACAGGCCATTTGGTCCCTGAATG
CATCAAGCTCCTCAAATACGGGCAGCCTCCTCGACCTGAACGGCGTCCACTCATTCATCA
CAAGGTCAAGTCTCTCCATGATCTCTTCGGTGAAACTCAAGCCAACATCAAAGGGTGATG
AAACATGTGTTATCGGACCGAGCTCACGGAGGAGCTGCTCAGCTCGGGCTACCGCCTTGT
CGCCATCCAACCCAGAGATTCTGCGAAGTAGGACATCCTCAAGCACTTGCACTGCCTCCT
CATCTCTACCCAGCTTAATCAGGCACAGCCCTAGGTTGCACGCCCTGTTGGCATCAGGTA
CGATAGTCTGGGCCTTCCGATACACCAATTCAGCAGCTTCATAGTTGTTCTGCTGCATGT
AAGCCCAGCCAAGGTTACCCTGCAATCGCGCAATGAAATTGTCAGCAACTAGAGTGTAAC
TAAACACTGTAGTGACATGCCCAAGACATGCCTAATTAGCAATCAGTAAGTGTAACATGA
GAGGAATAAGCCGTACCAGAATGCGCGACATCTCCTGCTGGATCGAGACCTGGAACTTCT
TGCCGTGGGAGCGTGCCGTCTTGGTGATCTTCCCGTTGAAGGCCTCGCCAAGGCATATCA
TCTTGAGCTTCTGTTTCAGCAGCTCTATCTGCTCGTCGACTTTTCCACATTTCTGAAGAT
CAAAATCAGACATATCAGGTCAGAATTAATGCATGAATTAACCCTTGAGCAAATTCCTCG
CGAGATGTGCAACTGAGACGCACCTTGTAGAGGTCGATGAGCAGGTTGTCGAGGGACTCC
TGGGCCTGCCTGGAGCAGAGGTGCCTGAAGGATCTGATGGCCTCTATCGCCTCCTCGGCG
CGGTCCTGCTGCTTCATCACCACGGCCATGTCCTTGAGCGCGCTGTCCACCCTGTCCCCG
GAGTTGATCGCCTTCCAGAACCACACGATCGACGCCTCCGCATCCTTCTCCACCAGCTGA
TTAATCCAAGCCGTTTCAGCCCAAGTCAGCAATTTAAGTTGCAGGGATTTTTCGGTCTCG
TTCAACTACTAATCATGAACTATAGTGTAGCCGAGAGTTCAATTTGATCGTAGTTAAAAG
AGAATCAATCACTAAGCACGCACGCTGACTCGGCGCGATGGACCACCGTCCATTTGTGGT
GGTAGCACGGGCAGCCTAGCACAGTGACTGATTCGGTGAATATATAGTGATCCCTTTCGG
CCTAGAGGAGCAAAGAAGATTTGGCGCCGAGAGCAAGAAGGCAAGAATCGCCCGGAGCCG
ACGGAAACGTACTATGAATTAGTCCTATGGTCCGCTTTCATGCTGGCCGCTATCATGATT
GGGCAACCGGTGCACAATCAAGGCTACTGTACATACATATTCCAGTTTCCGTTTTAACCA
CAATAAATCCACTCGATCGAGAGAGGGAGAGAGAGCGGGGGACAGAATTTGCATGGGCAG
GAGGAGAGCTGCGAATGATAAACCAACCTGGAGGTGCTTGGCCCGGACGTAGGGGCTGTC
GCCGGCGGGCACCTTGTGGACGACGTGGAACAGATCCTTCTTCTCCCCACCGCCGCTGCC
TCTCCTCTTGGAGGGTGCAGGCGCGGCCATGCCGTCGGAGCTGATCCGGAACGGAAAGAG
AGAGAGGGAGAGGAGAACAATGGGCGCGCGGATTGCTTGCCGGCTGGTGGTTTGTTTCGC
GGGTTGCGGGATCTGGAGGGTGGGAAGGGAGGGAAGAGGGGGGCCGGGGAGGATGACGAG
GCGGGCGGAGTGGATCTGGACGGGAAGGCGTCCGGGTTCCAGGGCGGGGGCTGGATGGGG
ACCTGGCCCCCATCCGCCGGGTGGGTGGGCACCACGCGTCGGCATCTGTAGTGACGTGCT
CGCGGCGCCTTGGGTGAGCAGCGGGTGTGACGGGCGACTCGATGCCTTTATTGTTACTGT
TTGATAGAGCTTTTAGAGCATGCCTAAGAGGGTGATCGGATACGTTTTAAATATTGTGCT
ACTACTCCCTCCGTCACAGTTTATAAGGCATACACATATACCTAGGTCATCAATTTGATT
TATATAAAATATATTATTTAACATAAAAATTANNNNNNNNNNNNNNNNNNNNNNNAAAGT
TTTTAATGATATATTTTTTATAACATATGTCTCTCATTAAGTTGGTCAAATTAACGACCT
AGATACACATGCCGAACTTATAAACTGAAACAGAGGAAGTATGTGTCATGCATGGCAATA
AATAAACTATTCTATGATACTAGCACATGATACTATGCATTACAGACGTAGTATCATACA
CCAGTTCACGCCCCCACTGTGTGTGCCATCTCCGGAGCTGTGCACGACCAGCTCCACTGC
TGGCCCACCAGATCCGGGTGGAACACGGCCACCGGGGCGTCCTCCATCACCTCCTCCGCC
TCCGTC
