Map Locations of contig_117401 (3461 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_117401

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_1949 1 507 bp AK355479 Not available Available None
MLOC_1948 2 1020 bp AK365296 Available Available None





CDS Structure of MLOC_1949






CDS Structure of MLOC_1948






Contig Sequence (3461 bp)

>contig_117401 3461 assembly3_WGSMorex_rbca.fasta
TATGTAGTTCATAGTGAAATCTCTAGAAAGACTTATATTTAGGAACTGAGGGAGTACTTA
TTTGTCTTTTACTTTTATTTGGGAAAATACATGCTTATGAAGTTCAGACATAGTTTTTCT
TCTTACAAACTGATTTTTTTTTTACTTCTGTAGGAGTGGCTGGAAGAACATAAAGAATAC
GAAGCTATAGTGGATGGTGCAAATATTGCACTTTATCAGCAGAATTTTTCTGAGGGCGGT
TTCAGCTTGGTTCAGGTCTGTGCATCATCCTACACTCAATTCTGACATGCTGCCATTACT
GAAGTAATCAGTACTAATCCATGTTCCATTTGTCATGCTTAATATAGAGCAGCTGGATGC
TGTTGTAACAGAGCTACGAGATAGATATAATGGGAAATGGCCGCTTGTTGTACTACATAA
TAAGCGCATCGCTAAGCTTATGGAAACTCCATCCAATAGGCATCTTATTGAAATTTGGAG
AGCGAATGGAGCATTGTACACATCGCCAAGTGGGTCAAATGATGACTGGTAATGTTCCCC
ACTTTCTAGCTGCGGATATTCTTGCACTTCTTGTTTCATGTTGTTGCTATGCTACAGATA
TTGATATAAGTTCAAGTTCGCCTTATTCTAAGATGGAAGTTTATCTCTTACCCTTTAAAT
TATTATGTGAAATTGGACTGTTGTTGATTCTCAGCATCTTACCAACTGTTATGTTTCCTG
GGTTTGCTAAATATATGTGATATAACTTTGCAGGTACTGGTTATATGCAGCAATTGGATT
GAACTGTTTGCTCGTGACTAACGATGAAATGAGAGATCACATATTTGAGCTCCTAGGATC
ATCATCCTTCTTCTACAAGTGGAAGCAAAGACATCGGGTGTGCACTGCAGAACTTCTGAA
TCATATAGGCCACCCCTATTCCTATTTACTCTGTATTTGTTAATGTGCTAATCTAAGTGC
AATTGCAGGTCAAGTACACTTTTAATAAAGGGAAGGCGGTGCTTGTTCTGCCACCCCCAT
ATTCTTCGGAGATTCAAGTAAGTAACCAAGTCAGGTTCTTCTAGAGCTTATTACTACCAT
TGCAGGAATCCGAGACAGGATCCTGGCATGTGCTGATGTTGGAAGGTGCTGTTACTGATG
TTATCTTCATCACAGGAATCCGAGACCGGATCTTGGCACGTGCCAATAGAGGAGAAATCT
GGCGACGAGAGAGCTAGGACTTGGCTTTGTATTGGTAGGACAGATCTCACCAAACTACCC
CGTGAACCTCTGGTGGCCAACGGAGTTGCCCAGGATTTATCTCCATCTGAGGCATCTAAT
GGAGCTGGGCAGAGACAATCTGCAGAACAGGCTGCACCAGTAACTGGCAAAAGAAAGGAT
AGAGATTGAAGCCGCTGCCATTTGTGGGCAACTGAAGGATGCCGTATTTGACGCTCTTGG
TTCTGCGTCCCGCTATAGTAGTCCAGGAACAGGGATGCAGTGTTAGCTACATCCCTGACA
GCCTGTTTGTGTTTTACAAACATTGTAAAGCACACCTGACTTGTGTGCAGCTGTGCACCA
ATTTGGTTCAGTTTTTAACGATAAATTTTTTTTGGCAAAAAGAACTGCATTGGTTCAAAG
GATAGTATTATCATACATGATCACATTGTACAACAGTGGGATGTTAAACTGGTTATGCCA
TTCAATTTCTGTGCTACTCCCTCCGTTCATAAATATAAAGTCTTTTTAGAAGTTTCATTA
GGGGACTACATACGAATGTATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGCTT
CGTATGTAGTCCCTTAGGCTGGCCATAGTAAGAGTAACTAAGTTAGTATCATGTACTTGG
GAATAACAAATATGCTGATGTGACAGACAATTAAAGAAGAGAGANNNNNNNNNNNNNNNN
NNNNTAGATACCGTAACATGTTAAATGCTACTCCCTCCGTTCCTAAATATAAGACCTTTT
AGGGATCCTAAATATAAGACCTTTTAGGGATTGCACTATAAACTACATACGGATGTACTT
AGACATATTTTAGAGTGTAGATTNNNNNNNNNNNNNNNNNATGTAGTCTTCTAGTGAAAT
ATCTAAAAGGTCTTATATTTTGAAACGGAGGGAGTATGTTATTATGTGTCATGCATGTCA
ATAAATGAAGTCATCAATGATACTAGTTTATGACATTATGTATTATGAAGGTAGTATCAT
ACAATAGTATCANNNNNNNNATACTACTATATGATACTCCCTCCGTCCCNNNNNNNNNNN
NNNNNNNNNNTACTAGCTTTAGTACAAAATTGTACAGCTTGAGACAATTATTTTGGGACG
GAGAGAGTATATGTCTTTTAAGAAATTTTACTGCGGACTACATACGAATGTATATAGACA
TACTTTGAAGTGTAGATTCATGCATTTTGTTCCGTATATAGTCAGTAGTGAAATATCTAA
AAAGACTTANNTTTAGGAACGGAGGGAGTACTTCCCACTATGGCCAGCCTTGGTGAAATC
TCTAAAGGGACTTATATTTAGGAATGGAGGAAGTATATTTTTCCTTGGCAATGATGGTGT
GAACAACTGAACAAGAACGGAAATTGTTGCGTGGTAAATTTCAGAAAAAAAGATTTTTCT
TGTTTGATCACTTTGCAGAGTTGTACCATCTGGCTTTCTAGCATCAGATGCAATGTTGCT
AGATCATGTCCAGAACCAGATGCAATATATTTTTAGGGTTGCAACTCTTAATTTAAGCTT
GCCCCTGACAATTCGAAAGTTACAGATAAAACTAACAGTGATCAGCAACAAGGAGACACA
ATTAGCTTTAGAAATTGAAGTTATAAACACAATCTCAAGGGAGTTGCGTTAATTTGTATT
ATTGCTTGGAAAATGATTTTCAAAGCCAATGCTCTTGTCTTAAACCAGACTGGATATACA
ACAAAAACTGATACTATGATCAAAGACATTATTCAGAGGCCAAGCTGAATATCCATACAT
TATTAAGAGAATGCACATTTAGATGTCAAGAGCTAAAAGTCTACATTCAGTTTCTGGTCA
ATGTCCGAGAACATCTCGAAGAAAGCTTTGAAGTGCTTGTATGTGGTGTCAATGTCTTCT
TTGCCACACATTTCCCGAACGCTGCAAACCAATGCAATAGTGGTCAAATACTTATAATGC
AACACAGAATTGTAGGAAGAACCATGATGTGGAAAATACTTGTGATACAAATCGAAAAAA
TAGTATCCACGAGATATGATTGTCATTTGTCTACCATTTCAATATCTCGGTAAGACATTG
TGTATGTGACAAACTGAAAATAGAAGTCAACTAACCTTTTACTCCCTCCGTAAACTAATA
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTTTACAGAGGG
AGTACAATTTAACTAATCTGAAAGCACTTTGTACATCACAT