| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_117001
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_19100 |
5 |
2649 bp |
MLOC_19100.2 |
Available |
Available |
LOC_Os03g52750.2, FRAME:-3, EVALUE:1e-179, 13103.m05753 protein cyclin, putative, expressed |
| MLOC_1907 |
1 |
1324 bp |
MLOC_1907.1 |
Available |
Available |
LOC_Os12g43970.1, FRAME:+1, EVALUE:7e-173, 13112.m04638 protein hydrolase, alpha/beta fold family domain containing protein, expressed |
| MLOC_1908 |
1 |
2703 bp |
MLOC_1908.1 |
Available |
Available |
LOC_Os08g03450.1, FRAME:-3, EVALUE:1e-16, 13108.m00307 protein ribosomal protein L37, putative, expressed |
CDS Structure of MLOC_19100
CDS Structure of MLOC_1907
CDS Structure of MLOC_1908
Contig Sequence (8493 bp)
>contig_117001 8493 assembly3_WGSMorex_rbca.fasta
CTTTAAGCTGGGGGTTATTGGTTCCACGCTGAGAGCATAAGTTGCCAGGAATGAACTTCT
CTCCACACTTAAAGCACAGACCATTAGATCTCCTGTATTCTTTTAACTGTTTAGCCTTCC
ATAGTTCCCCTGGTGCCAATCCCTGCCTAATGTCAGATTTTGCATAGGCCTGTTTTGGGT
ACTGGAATTTATTGCTCTTCTGTGGAGCTAGTAACCCTTCCTGAACAGAAGCATAAAATG
CAGCCATCTGCACTGTTTGAGGTATTTGAACCTCCACCCCTGCTCTCGGTTCTTCCTTAA
GTCCCATAACAAACCTAGTGACCAGGAAGGTGTCACTGATACTAGGCTCATACGACCTGA
CAGAGTACACTATCTGCAGGAATTTCTGTTTGTACAGCTCTACTCTATCTGTTTGTTTCA
ACATGAGTAATTCCTTCATGTGTTGCATGTACACATCCACATCAAACTCTTGGATCACTG
CAGCAGCAAACTGTTCCCAAGAGTGGAAACCTCCTAACTGCTTAAAAGCCTGGTACCAAT
GTGCTGCATTGTCAGAAAGGTGCAGAGAAGCAGAAGCAACCTTAAAATTATCAGGAATGT
GGTAATTGGAAAGAATGCTTCACACTTGTCCAGCCACACCCTCACCCCAGATCCATCAAA
CCTAGGAAAATCCATTTTGGGCATCCACTGCCTCTTCCCCCCAACATCCTCTCCAGAAAC
TGGTATCACATTCTGCACTAATGGTGGTACTGTTGATACCTGAACCTGACGCGGAGAGGG
TAAAACACCGAGGCGAGGAGCTGCTCCCAGTATTCCCTCAGATCCATCCGAAGCCGTTGG
TGAGGAACTCTCCGTCCCCAAGTGTTGTTTGGCTCTCTATCCCCCCTGAAACTGCTGCTG
TTGCTGCACCTGTCCGAGAGCATCACACGAGAGATTTACCTTCATCTGAACTTGATCCAG
GCGTACCATGTGCTCGGACAGCTTGGCGTTGAGGGCCAACAACTGCTCGCAAATCCCATC
CACCAGATTGAGTTTCCCTTGCGCGGCTCGAATCTCGGCGAACTCCTGCAGCATCCGCTC
CTGCAGTGCCTCCATCTCGTCCGCGAGGAAGCGTGACTGCGGGTTGGGCTTGAACTTCGC
CGTCGTCGCTGCTCTGCCCTAAATCAACCCACCTCAGGTCAGGAATTAGGCGGATCAACC
CTAGGGATGAACTGCAACCTTCGCCTCGGATTTGCCGGGTACGATTCGGGAGAAAAAAAT
TTGGAGCGCACGGCGGCCTGGAGGCTCTGATACCAGATTGTCACGACCTCTCTGTCGGTT
GATCGCCGGAGTGGGTAGCAGGGATCGGCGATGGTGTGGCCGGCGGTAGAGAGGGAACCG
GAGGGGGGCTCGAGAACGGAAACGGGAGGTAGGGAACGCACGGGAAAGAGATAAGACGGC
GAGAAGGGAATGCGGGAGAGAATATTCGTTTTTCAAATCATGTCCGACACAGTACAAGGC
TCCGCTATATATAGCTGGCCCGAATGACCTCCACACGCACACATCAGGCCCAGCCCAACC
CCTAGCTACAGGCCCAAATCAACTAGACCTTCCCGCGCCATCTGCCGATGTTCAGCTCGC
CTGCTCCTCGCGCCTCACGTCTTAGCTGACAATTTGGTTGCCAGCCTGATATCGAATCGT
GCGCATTTGGCGTTTGATAAGCTTAAAGGTCTTGATGTGTTTCCGACGAGATTGTGTTCA
GACATTTCACCATAAGATCTTGGACTTGGGTAAGTCGTGTGTTTTGAACGTCGACCGGTC
ACTCCTTACTTTTTTGTTTTCGAGCCCATCTTTCTTTGCGAGAAGAGTTCAAAAGGTATG
AGGCGGCGCCCTGGTCAATCCGGAGCTTGTACAACTTCAATACGTCCTCGGTTGGCCATT
ATTGCCACCTCTCCTGACCCACAGCTCCACCTAGCTCAGAGCACAAGGCCATTAGCCATG
GAGGAGAACGGCGGTGTGCGGCACTGGAACGCCGACGTGAACGGCGTGTCCCTCCACGTG
GCCGAGCAGGGCCCCGCCGCCGGCCCGGCGGTGCTCCTCCTGCACGGCTTCCCGGAGCTC
TGGATGTCATGGCGCCACCAGATGGCCGCCCTCGCCGCACGCGGCTACCGCGCCTTGGCC
CCCGACCTCCGCGGCTTCGGCGACTCCAGCGCCCCAGCTGACCCTGCCGCCTACACCGTC
CTCCACGTCGTCGGCGACCTCGTCGCGCTCCTCGACCATCTTCGCCTCACCAAGGTGCAT
GCGCCCTTCTCTGCACAGCTAGCTGTGGCTTGTTCTTTCTTCTTCCCTCGGCCGGACGAG
TGACGCTCTAACGCCCGGCACCGGCGCAGGTGGTGGTGGTGGGGCACGACTTGGGAGCGC
AGGCGGCGTGGCATCTGTGCCTGTTCCGGCCGGACCGGGTGCGCGCCGTCGTCGCGCTGG
GGGTGCCGTACTTCCCACGCTCACCTCGACCCGTGACGGAGATGTTCGCGGCGCGCGGCG
ATGGCTTCTACATCACGCAGTACCAGGTGACGATGTCCATCCATCTTTTTCTTATTGCCA
ACACCATGGGCCGGGAAGCAGTGAATTGACTCGTGTGACATGGAAATCAATCACATACTA
GCTGACGAATTTCTTAACATCTGTGCTAAGAAGAAACTTAAATTTGTTACTCTAATTGAT
TCTCTATGTCTTGGATGATGATTAGAACAACCCACGCCTTATGTTAAATATGTCTGTACA
AGTAATAGTCTTGCTCCAAAATAGGAAAATAATATTTCCCAAAATTAGTAGAGAGATTCG
ATGATTCGGAGACATAGACTAATTAGTTGGCCTTCATTTGCTTCAAATTACTGAATTTTT
TGGGGGGGTTTCCAGAATTACATTTTCATGCTCATGTGGCACCAGGCATATCATATCTCT
TTATTATCTCCAAATTATATGTATGTATTGAGCACTCTAGCTGTTGCAAAGGACCAACTT
GTATCAATCAAAATCATTCATGTAGGAACCCGGAAGAGCGGAAAGGGCATTCGATCGGTA
CGACGCTGCAACCGTCCTAAAGAAGTTCTACTCCATCGAATTAGACGACCTCACTGCTCC
TCCTGGAGTGGAGATAATAGACTTTTTGGAGGCATCATCATCCCCACTTCCTTGGATGAC
CGAAGAACTGTGTCGGTACGCCGAGAAGTTTCAAAAGTCTGGTTTCACTGGACCACTCAA
CTACTACCGCGTGATGGACACGTAAATTTCCCATTTTCTCTCCATGACTTCTCTTAGAAC
TAGCTTAATTTGCAGCACTGATTTATGGGATGATACAGGAACTGGATGCTAACCGCGCCA
TGGCATGGCGCAAAGATCACGGTGCCTGCAAAGTTTATCGGGGGCGAGAAGGACACCGGT
GTCGAGTCCTTTGGGATCAAACACTATATCGAGAGCGGAGCCTTCAAGTTGAGTGTCCCA
GACTTGGAAGTTGCCATCATCGAAGGTCACCATTACCTCCAGCAAGAGCAGGCTGAGAGG
GTGAACTCTGAGATATTGTCCTTCCTGGACAAGTTTTTTGGGGAGGAGACGCCAAAATAA
CCTTACTGAGAAATGAGCAACATATGGTCTACCAGCTGGCTTTCGATATGTAATGAGATA
CTTTTCATGATTTGAAAAACTGAAAATTTCATACAACTATGTACTCAAATAAAACTTGAA
CTGGCAAAGGTCAAGGCAATGAAAAGTGGTACGTAAGCAGCGCAAGGCAGCAATCGAAGA
AGATAAGTTTTGAATCCTTGCTGTGTAAGAGCATCTCCAGTCGCGCCCCTAACAGGTCCT
TCTTGGGCCATTTTTTTTCACCGGCAAGGAAAAATTGGCCCAAATGCGCCCCCAAAAGCC
CGATTTTCGCCGGTTGGGGACGAAATTGACCCCGACGGTCCCAGGCCGAACCCAGCGCGC
TAGGGGCCGCCCAGTGATGCCAGCTGAGATGATTTTGGCGCCAAACAGCCGTGGACCTAC
CTAGTTAGCGACCGGCGCACGGTCGTCCTTCTCATCGCCTTGTTTCCCACCGGAATCAAT
GCAAAGGTTGCGTCGTCGGTCAGCCTTCCATTATTCTTCACGTGCAGTGCACTGAAGGCG
CGGCAACGCATGTCCCGTCGCTCCCCAACACGCTTTCACACCACACCGCTCCGCGTGCCT
GCCCGCCCGCAGCTATATAAGACGCCCCTCCCCCACTGTGGCCACACCTATCTCCCCGTC
GACGCCCTTTCCTCCTTCACCTCTTCCGTCGCCGGCGCGTTCCTCTCCCCTCTTTCTCCC
CTAAAAAATGGCCGAGAGCTTCCCCGACGATGGAGCGACGACCAATGGCTTCGACCGAAA
TCACCTCCGCGAGGACGAGGCCCGCCTTCTCTACGGCCTTCTCTACGAGGACTACTCGGC
GCCACCGGACATGCGGGTGCCGGGCTCGTGGAGGCTCTGCGTCGGCGGAGTCCCGGTGCC
ACCACCGCCTTCTAGAGCGGAGCGGCGGGCGAAGATCGTGTGCGTCCGGTCTGGCTGACG
GGGAACGTGTGGAGCCTGCCGAGGTACGCCCCCGACATCACCACGCTGCGGACGGCGTAT
TTCAAACACCGGCACGCCAACCAGCTCGTTGCCACCAACGGGGTGGACCCCCGCGGTCGC
CACAACTTCAAGGAGCGACGCGAACGGTGGGGCGTCCCCAGCCGCACTTTGGAGGCCGTC
CTCGAGCACATCGACGACGGCAACTCGTCACAGTTCGAGTACCCACCACCACCCGTCTTC
TCCCGCCGTCGCGGCAGCTCCTGGACACCGAGGCGGATGGAGACGGGGCCGTCCTCCTCG
TCCGGCTCCCGCAACGAGCCTGTCGCAACCCCCCGCCTCGCCAGGCAGAAGACGGAACCG
GCGTTCCTCACCGTCAAGAAGGAACACCTCGACATGGCCGACGACGAGACCACCCTCAAA
TGGGTGTGGGAAGATTCCTTCCTAGAGGAGAACGAGCTTGACGCCTCATCAGGCAAAAGA
CGGAGCCGGCATTCCTTCTTGACGATGAGGAACGCATGTGGGCGATGGCGTAGCACAGGA
CGACAACGTCAGCGGCAAGTACACCTACTTCTACAAGCTTGTCAGCGACAAGTACACCTA
CTTCTACAAGCTTCTCGGCATGTGAAGTTCAAATGTTGTTTGAGCATCATTTCAAAACAT
TAATTGTAAAGTTTAATTTGGAATGATGCTCAAACAACATTTTAGCTGCTAAAACATCAT
ATATTATGGTACAGAAGTAGTACTATGGTAAAACAGCAGTTCATTTCCGGTGCTAAAACA
GCAGTTCATTTAAGCAGCTAAAACAGCATACATTATGGTACAGAGGTAGTACTGGTAATA
GAATCATGAAATGGAGATGCTCTAAAGACGACTCTCGCTGCCAATTTTGTACGTTTTTCA
GCCATACGAAAATATTGTTGTTCAGAACTGTGTTCGGTTTATCAAAACACAGGCAGCCAG
CCTCATTAGAAACCAGATATGCCACACAGCTACGTAGCACTAAAAAATTCACTAGATTGG
AGGGCAGATGCCCTTACATCCAACATACAAGAGAAAAAAGGAGGAAGAACGGATCAAGAA
CTTGTAACATTCAGACAAACTTGGTCTTAGATTCAGAGGTCAATTTCCAAACCAATGCAA
CAGAACATATCAGATCCATACTCAATTCTATAGCAACAATAGTTTAGGCAGGGGGTACAG
TCCAAGCAAAAGTTTTTAAATTCTAGCTTCACGGGATTCCAGATGGGGCAAAATCCAGAC
CTAGTTGGCCGCTGCTCTGTTTCTGGGGGCAGCCTCGGTACCTGAATTAACAAGCAACAG
ACAGAAATGCATCAGAACAAGTTCAGTTATAAAAGGATGTTCCCAGTGTTAATAACTTCT
GATAAAGATGACAAGGTTACCTTCTCTGAAGTTGCTCTTGAACCTGCGAGGCACGTGGCG
CATGTACCTCATCCTTCCAGTGCCGGTGGTCTTGCGCCTGATGGCCTTCACACTCCAATT
GTCTGAATATATGAATCACCAAGTTAGCACTGAGCAACTCAAAAGCACCAAAAGTGGCAA
AATCACTAATAAAACATAAGACAATACAGGACCAGTAATCCCAGACAATGCAGAGAAAGG
GCTATCCAATCAGATCAAAGAAAACAAAATGTAATAAACAATCTGAACAACATGAGCAGC
AAACACCATACAGTAAGCTTCCTGTTTGTTAAATTGCTCAAGTTTCATGGATTGTAACAG
TGAACACCACAAAGCAATAATCATGACCAAAAGTCTGATCATTAGTAGTTAAGATCACGC
ATAAGAAAGTATACACCCTCCGTTTCTAAATATAAGAAATTGGGGCCGTTCAACAAACTG
CTAAAATGTCTTACATATAGGAACAGAGGTGGTAGTAAAGATTTACAGCTAAGCATGTTA
GCTGTCGGACAAAACAAGTAAATAAAATGGCATATAAGCAGGCACGGGAAGATAACTGAC
GGAGAAATCATCCAACAGAAAAATTACAAATTGTGGTCCTATCAAATTGCTGCAACTTTA
AGAAGACAAGAACATCAACAGAATTGCATTACAGAAGACAATGGTAAATACAAGATGGAA
GCATGGAGAAATCATCAGACTTAAAACTACGAATCAAGGGAGTGTAACTCCTTCATATTG
TTGCAGTTTCTCATCATCACTTGAACCACAGATGATATCAGGCAACGGATAAAATTGGAA
CTACCAAGGTTGAAGTTAGAAATCGTTGGGAGTTAGACTCTTCCACATTGTCAATTTATG
AACTTAAAATTGGAGTAAAATTATATTTATTGTGCAAAAAGCAGGACTTCCGTCAGTATG
TTGACAGAATAGAAAGACACATGGTGAGGGTGAGGTCTCATCAGAGACTTAAATACTAAG
AATCAGCGGAGGTTAGCTCCATCATATTGTTGCAGTTTATTCCTCATCACTTGACCCTCA
CAAGCTTAAGCATGCATGGACAACACAAGTACACGCCACTAACTACGGAGATAGGGTAAC
ACAGAAGACAGAGAAGACGAATAAAAGCTAGTGCAACAACTTAAAGTCCAGCAATTATCA
AGAACAAAATACGATTTTTTTTGCTCAGAGTATGAAATATCTTCTCATCAATGCCAAATA
AATGGCATCTCCGAAGTCTGACATGCGTTGTAGATTTCATTATTCATCACAGCATTTTGC
AAACCGCAGAAATAGCATTGAGGATCCGATAATCTCGCTAGCACGTGCATCACCAGTACC
TAAAAACTCCCGCTGGGAGATCAAACTATGCATCCAACAACCATCATCCAAACAGAGGTG
GTAGTAAAGACTCACAGCTAAGCATGTTACAAGTCGGACAAAATAAGTAAATAAGATGGC
ATAAAAGAAGGCAGAGGAAGATAACTGATGGAGAAATTATCAGGCAAAAAAACTAGAAAT
TGTGGTCCTATCATATTGCTGCAACTTTAAGAAGACAAGAACGTCAACAGAATTGCATTT
CGCAAGAAAATGGTAAATACAAGATGGAAGCATGGAGAAATCATCAGACTTCAAACTACG
AATCACGGGAGTGTAACTCCTGTCATATTGTTGCAGTTTCACTTCATCACTTGAACCACA
AATGATATCAGGCAACAGATAAAATTGGAACTACCAAGGTTGAAGTTAGAAATTGGTTGG
GAGTTAGACTCTTCCACATTGTCAATTTAAAAACTCAAAATTGGAATATAATTATATTAA
CTGTTAAAAATGCAGGACTTTTCTCACTATGTTGACATCATAGAAAGACACAATATGAGG
GTGAGGTGTCATCAGAGACTTAAATACTAAGAATCAGAGGAGCTTAGCTCCATCATATTG
TTGCAGTTTATTCCTCATCACTTGACCCTCACAAGCATAAGCATGCATAGACAACACAAG
TACGCGCCACTAACTATGGAGATAGGGAAACACAGAAGACGAATAAGAGCTAGGGCAACA
CATTAAAGTCTGGCAATTATCCAGAAAAAAAACGAATTTATTTTGCTCAGAGTATGAAAT
ATCTTCTCATCAATGCCAAATAAATGGCATCTCCGAAGTCTGACATGCGTTGTAGATTTC
ATTATTCATCACAGCATTTTGCAAACCGCAGAAACATCATAGAGAATCCGATAATCCCGC
TAATACATGCATCAACAGTACCTAAAAACTCCCGCTCGGAGATCAAACTAGCATCCGACA
ACCATCATCAGAGCGTGCAGAAATAGTACGAACCGAGGTGACTGAATCAACCGCTAACGT
CTCAATTCTCACAACCACATCCTAATGTGCACTAGGTAACATCCAAGAGACGAGGGGCAC
CATCAAGAACGTGGCGCAGTAGCAGTAACAGGCATGGGGATCCAGAACGGAGGACGTGGG
AGGGGGTAGCTTACACTTGCGGATGCGGGCGGC
