morexGenes - Barley RNA-seq Database

Contig contig_116785
Source Contig contig_116785
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_116785 (6463 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_116785

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_1883	1	393 bp	MLOC_1883.1	Available	Available	None
CDS Structure of MLOC_1883

Contig Sequence (6463 bp)

>contig_116785 6463 assembly3_WGSMorex_rbca.fasta
CATGCGACGTTCCCCAACACAACCGTCTAGGGCATCCAAGCGCCCAAGAGGAACAAGCTT
TAGGGTACCAAACACCAAATAGTAATAAGCTTCTCAATTTTTCACCTCCACGTAACACCG
TGGAGAACTCAAACCGATGCAACTAATGCAATGATAAGAACAAACGAAGTGGTCAAGTAC
CTCACTCCCAAATCCCATCAAAGCAACGAAAGCTATGAAGGAATATGAAAGGAAGAACAA
GGAGAACACCAAGAACTCCAAGATCTAGATCCAAGGGATTCCCCTCACATAGATGAGAAA
GTGATTGGTGGAAACGTAGACCTAAATCTCCTCTCTTTTTCCCTCAAGAACTAGCAAGAC
TCATTAGAGTGATTGAGAGATAGCAAGCTTGAAGAATGTCAACAATGAGGGAAGAACAAG
AGCTCAAAAGGGATAAGGTCCATTGGGGAAGAAGACCCTCTTTTATAGGTGGGGGAAAAA
TCCAACCATTATGCCCCAGCCCAGAGTAAAGTGGTACTGCCGCTCGGGCAAGCGGTACTA
CCGTCTACCGCTAAAGAGAATAGGAAACAAAAATCAGCACAAAAGGAAATTCCTAAGCGT
TACTAGGAGCATTGGTAGACAGCGGAAGTACTGCTTAAGCCATACTACCAGGCTAGTATC
GTTCTACTACCGCTAGAAGAAATTAGGCAACAGAAAGAAACACGAAAAGGATTACCGTGG
CACCGAGTGGTACTACTGCCTGAGCACTAAAAAGTTGTCCTGATACTGAAACTGTCATAA
CTTTTGCATATGGGCTCCAACTTGAGGAAACTCAAGCTTGTTGGATAGAAGACGATAAGT
ATTAAGAACTAGCAATGGATAATAAATGTCAACACGATAAGGAAGATAACCTTCCCAAAT
ATGACCCGACAAAATCTCCAACACCGAAATGCGAAGATGATCCATATGAAATATGTATTC
GATGATCTTGAGTTTGTCAAGACGAAGACTATAAGCTCCAAAACTCATAGATGGAAAAGC
CAAACAAAAAACCAAGAAAGATGATGATGCCAAGAGTGCAATGATTTGAGCTCTCTATGA
ATGATACGATCAAGCTACTCACTTTAGAGCTCCCATTGATAGTATGAAAATCGATCCTAT
AACCTGGTATCCCAGCTAACACCATGAGACCGGTAAAATGGAAACCTATCAAGGAAAAAC
CTTTACCTTGCACATATTCCACTTGAGCTAGATGATGACGATNNNNNNNNNNNNNNNNTG
GACCACCTTTCTTGATTGTGCCAACTCGATGAAGACTAGTAGATTGCTCCCGCGTATCCC
ACTATGGCTGAGCCTCTTGGCACATCTTCACATGTCCATTGTCACCAAAATGAATGGCAA
GCTTCAAGCATGCGATCTCTTCGTGATGCTCCACTTGAACTTGCGCACCGCAACCTTGAT
GACGATCTCCACTTGATGTCATCCTCCATGAGTCATATGAGGTATTCCTTTTGATGCATG
ACCATGGAAAGATACCTAACCCCACAAGGAACTCTCAGATAGACCACGGGTTAGTACACA
AAGCGTAATGGANNATGCTTACCATACCATGGAATCACTTTATCCCACTCGGTACAACTT
CTAAGTTTTATGCGTTGATAAAATTGATTCACTCTTTGACTTAGTCTTGATCAATCTTGT
ATCTTGTCTTCTTTCTTCATAAAGATGATGTCTTGAAGGTAAACATGAATGATCACACAA
TCTCCTTCTTCAAGACATACTTGCAATAAGCTCAATTCTCACGTGACCAATCTTTGGATA
ACTCTTTGAACAACGCCTTGCTCACGCAAATTCTCCTTCTAATAACCTCGAAACCAACAA
ATGTTCTTCCAGTAATGCCTATGGACAAACCTTTCTAATATAACTCAAGGAAACCATTAG
TCCATATGGATTTTCATCAATTACCAAAACCAAACATGGGGCACCATGCTCTTTCACCAT
TTGTGCATGTGGTCGTTGAGATTGAGGACGGCTTTACTAGCTGGGCATGGCCCAATATGA
CGTGATTCGTCGCACTAAATGTCACCATCTCCATGTTAAATACGTGTTATCTGACGCGCT
CCATCTCTGCCACCAAATCTACATGTGCCTCCTCGTTATGGAGCCAAATGACATGATCTT
TCTTTCGCTACCAATGCCTGTGTGGTGGTGGCCTCCCGAAAATTTGGCAAGAGAGGACAA
CCGAGGCATAGGCGGCGTATTGCTCATCCCATGCATCCTTAACAATGAGGCGACCCGGGC
TAGCTCTGGGACGTGGCGTGGGTGAAGCCTCTCATGTCCATAGACGATCAACATGTAGCG
GTGCTCGATATCCCAAACAATGACGTGCAGCGGCCTCCAGAGCATCACGATGATCCCACT
CCCCCTCCTCGGCGATGAGGCGGCCTGCTCCTTCGCTTCCTCCTTGTCCAAAATCCGCCA
CTCATCCTCCGAGAGCGAAACCTTGTCTGGTTGCGGGGGAAGCGACATGGTGTCAGGGAC
ATGAGCTATTCGTACATGGTCACAACCATTTTTATAGCTGCGGGCAGTGGGAAAAAGTGA
CAGAAACTATGGTGGCAACGCAATTGCCACGAACAGTTGGCATGTGACAACCAGCGTTAT
CTGGCCTGTTTCCTGGTGAGATGAGTTTGGTCGTCTGCGCCATTGTAAGGAGGGAATGTG
GGCTGCATGGGAGGTTGGGGAGGGAGGTGAAACTTCCCTCCTGCGGGTGCAGTTGGCGAT
GGAGCGCTCTCAGAAGCAACGCTCCACGACCTCCAAATATGGAGGGTCGCGGGGTCAAAT
TAGAGTGGTCTCTAAAAACTGTGACGATCCATGGTGGATGGCGACTATGTTAAACCTATT
TCGAACAAAAACATCAAAACTTACTGTTCTTCTGTTGACACGACCAAGCGACTTTGCTAG
AGTTCCTCTAAGCTAGCCAGAAATAAACACGTGAATGTGGTCTTCATGGGCTCGGGGAAA
CGTTTCTTTTTGTGTGGTTCTCATGTGATCACTATGTTTATAAGCATGGCAAAACAACCT
CCACATCAAGGAGAAGTTTCAAATGCCTTGACTTATGAATACAACCTAGGTGGGACTATT
CCCCCAGGACTTTCTTTCTTTAAAAAAACTACTCCTTTCATTCCTTTATGTAAGGTGTAT
TATTTTCAGCACGGTGATCAAGTCACATAATTATACACATGTTAGGATAAAATTAACCTT
GACTAAATCATTGATTAACGACAATTAAATCATTTAAAACTAAGATGAACATTCTTGTCC
GATAATATGTTCATTTCGAAAAACCTTTTGAGAAAGTGTCTCTTTTTAGGTTGAAAAAAC
ATGTGGTTCAAGGCTAATATTGTTTCAACTATACATGTATAAAAGAGTCACTTTCCGTTT
ATTTGGCATACACGTTTAGAAAGTGTCCTTTATTCTGACAGTAGTTATTCACGGTCTGTC
ATATCTATTTAAGGTAATATCACTCATAGTCATACAACTTGTGTTGAATGTGTTTTTTAG
TGCTACAACTATCAAAATACGTTTTTCTGGTCATACAACTTGCATTTTGGTGCAGATACG
GTCATTTCGTCCGTATCTGCTGCTGGCGTGGCAACCCGCGCGTAGTTTTTCTTGCACGGA
CCCCCTCAACTGAATTTTGGCACAATTTTCAACTGAATTTTGGCACAACTTTATACAGAA
TTGAACCATGAAAATAAGACAAATACAGAAGGAAGTGACATTCAGTTAACATATTCAGCT
AATTCTCCTTACAAGTATAGTACACATACTTGACATAGCAATTTAAGTGCCAAATTCAGA
GTAAACGTCTTCAATGTCAAAAATTTCAGTTTACTACAATGTTTTCAGAAATTCAGAGTA
CAAACAATGAATTTATCATACTTTTACATACTAAAACTACGTCCTTTGATAACCCCTTCC
TAAACCCTAGATCGATTTGCGAACAGGGGAACTTCACCTTTGAAATCTGATGGCTACAAG
GGAGCTGAACCCTAGCGCGATCGAACATCTGTCAAGAATCCTAAGGGGGCAGACGCCGAC
CTAACATGACACAACGAAAGACGGCGGCACAAACAAGACGACGGGGAGCAGAGGAAAAAA
CCAGATGGCGAAGACCAACAAGGGGGCAGACGTATCATAGGATGGCGCTACTTCGCCCGG
ACGTCAAAGGTTCACTCATCTCCTCCGACGAGGGCCGTCGTGACGCGCCGGCTCCTCCAC
CTCTGCCTCTGTAACGGTCGGGAGACGAAGCGGTGGGGAGTCAAACTGAAACGCCAGCGT
TTTTGAGGTGCCGCTCGCAAATATACACGGACTGCTTGTTCTTGCCGTTGTAGGGACTTT
TTTGCAACATAGTAACAAGTTAAGGGGGGTCCATGCAAGAAAACCACGTGCGGGTTACCA
CGCCCGCAGCAGATACGGACGGAATGACCGTATCTGCACGAAAATGCAAGTTGTATGACT
AGAAAAACGTATTTTAATAGTTGTAGCACTAAACTGCACATCCAAGACAAGTTGTATGAC
TACCAATGATATTATCACTATCTATTTCACTTAGATGATATTTCCGTTTATTTGGCATAT
TTAGCACATGGATGAATATGTTGTTCACCACATTGTTATTTATTTTAAAAGATATACTCA
CCCACAGCCTGTGCTATATTAGAAGATATAACTTTTGGTTCCATCTGCATGTTCCATTCA
AATGATCCAAATCTCTTAACTCACTACACGATGCACATTTTGTGCATCGGCGTCATCAAT
ACACAACAGTAATCACACTAAATAATAAGCATTAAACAGTACAAAAACTTCTCCGCTAAG
ATAAATCAGATCATTTTTCTTTTTATTTTTCTCAGCCAACCACTAACTCATGCTCATCCA
CCATCACTATATATGTGTGTGTGAATCTTCAGACGACTTCAACCAAGCCATCACAAAAAC
CATTTTCTCTGTAAACAGACTAGTAGCTTTAAAGACTTCGAGTAGTATTAGGTAAACAGA
GAGATGGCAGCAAAGTTTTCTTCCATCGTGTGCAAGATCCTTCTCGTCGTTGTAGCCATG
GTTGCCCTCCTGTCCTCCGCCTGTAAGTCCTTCTATTTTCTCCTGATTCCTGCATAGGGA
GAACCTTTTTTCTAAGAAACCCCCGAGCCAGAGACATGAAAAAGTGAAATTTGTAACCTT
TGAAAACTATCGAACTAATAGCGTGAATGCTCACCAAATAAATCTCGTCTGCAGATGCAA
GAGACGACTCAAAATATGGGCAGTGTTTTTCCCGGCCTGATTGCAGCAACTACTGCAAGA
ATCAAGGATACCAAAGGGGAGGCGAGCTCATGCCGCCCAACTTCATGGACTGTTGTTGTT
TCATATGAACATTATCGTGCAATGTTCCGTTTTATGTCTAAATAAAATAAAATGCTGTAA
TAAAAGTGAAATACATGGATTGCATGCAAATCTGCTGGGAAGTTTGCCGGCATTTTGGAA
TATATTCACATGAACTTGTGATTTAGAATGTGTGCGTACTTATTGGTATTTATGATGGTC
TCAGATTTCAACTGTATGTTCTCCTAAAAATCATGTAAGTGAAATAGATACGACAGACCG
TGAATACTGTCAGAATCTCTACTACTTCAAAAAAGTAAGGTTCCGTCGCATGTAAATCTC
TCTTCCCGTCACTTCTTCGTCCGTTCTCCCATCCTTCACCGGTTGACCCGATTCTCTATC
CCTTTCTGTTTATCATCAAACCAGTCTCTGGTAGCCAAATTGGCAAGATCAATCCACGAT
ATAACAATACATTCATGACCCACAAACAAATTGTTCCTTATGGCAAAACCTGATACCATT
CAAACGCATTTTTTTAGACAATCCACAAAACCTTATTAAGCCATCACAATGTTTACATGG
ACGAAAGATAAATCACTCGGGTGGCCTAACCAAACATGGCGGCCCCAACCCAGGCGTAAA
GCATGTTTCGCTAGATTGTGAGACTCGACATTCGAGCTCCTAGACTCAATGACAAAGTTA
CAACTGAAAAAACTGGAGGAAAAAAGAATAATCTCATGGATGATGGCCCCGTAGTCTGCC
CGCTCTTCCTCTTGATATCTTCTACCACCACCTTGCAACGGGATGCAACATGTATGTGTT
GTAGGCCCAGGTCCTGAGCCAGTGTCATAGATTCTCTGACGGCAAGGGCCTCAAGGGTAG
TTGAGTTTAAGGTACCCCGAAGCACAATAGCTCACGCCCCCAGAAAAATTCCATACCTGT
CCCTGCAAGTAGCCGCGACTGAACCGAGCCCCCGACTAGCCGCAACCGCTGCATCAACAT
TTTTTTTTCTTTTAGAAAAGGAGGATGACCCCCGGCCTCTGCATCAGGGAGATGCATGCG
GCCATTTTATTGATTATTCTCGAGGACCTTACAAAGTATTACA