morexGenes - Barley RNA-seq Database

Contig contig_116347

Source Contig contig_116347

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_116347 (2330 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_116347

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_1840	3	1609 bp	MLOC_1840.1	Available	Available	LOC_Os03g08050.1, FRAME:+2, EVALUE:6e-107, 13103.m30164 protein elongation factor Tu, putative, expressed
MLOC_1841	1	416 bp	MLOC_1841.1	Available	Available	None

CDS Structure of MLOC_1840

CDS Structure of MLOC_1841

Contig Sequence (2330 bp)

>contig_116347 2330 assembly3_WGSMorex_rbca.fasta
CCCCCCCCACCTCGCGGACCAGCGATCTCCAGCGCCGCGGCGCCCCCCACCTCGCGGATC
CGCCGATCCAACGCGTTAGGTGTGTTTCCCCTCCCGACCACCCTTCAGGTCGCCAAATAG
TGTAGTGGTTCGTAGTTCAAATTTTGTTCATAGGTCGCGAACCCTAGGAACCTAGCCATT
TGGTTCGTTTTCATTCCCGTGCATGTTGGTTGATTTAATTAACATTTGGAGATGTGGAAT
TCCGGCGATTCAAACTCTAGGTCCGGACAGGACAGGTGCCTTGTTTGACTAAATAAATTT
CCCTGCACATCTCAGCAGATTCTGAAATGCCAGTTTTCCTGCGAATGCTGGTTCACTGAA
TAATTTTTTCGGTTGCCCTGATGTGCTGCATACTGCAACCTGACCTGACATTGCAATTCC
TTGTTGATTGTGCCTAGGATCTGCTTTAGCATGTGGAATTATGTTTCTGATGTGCGTTAT
ATGATAGAGATAACTGATTCCTTAGACCCAAGTCACTGCTCAAGCTCACTGCCGTATGAA
TTTTACTATATATCTAACCTGGCCTTCGTCCTGAACTGTTCCTGACATCTGAAGGAACGA
AGGCCATAGATTACAGTTTATTAGTACATATTATTTGTCAATGATCTGCACAGACTGCAG
GAACAGCACACCTGAAAAGGCCTGATGACTGTGAGCTCATGATATGTACACTGTTACAGT
TTATTAATGTATATCGGAAATTATACAATTCATTCTTTAGCAGATCATGTTCGCCGAAAA
GGGTGTTGACATGACACCTCAGCCCCGGAAAGTTAAGATTAAAATCAGTGTCCCTTACGA
CACAAGTCGGAAGATTCACAACCGACACCATAGAAGTTTGAGTACAGGTATATGCAGATA
CATCAAAATTTAGCTAACAATGTTTATGTAGCTGGTTGATACATCAAAATTTAGCTAATA
TTGTGTTTATGTTGCTGGTGAAGGTCAAGGCCAGGACCCTCCGAACAAGGAGGAGGAGGA
TCAGGACGAGCATGTCGTATATGGCTATGAGGATAGTTTGGTCAAAGTAAGTTCCATTTA
TCGTTTTCTGGACCAACTAGTGCATGTGGTTTAATTGTCTTAAGTGTAAAAATCCATCAG
ATCGAGTTAATTTCTACAAGATCATCTGACATGTCACTTTTATCAAATACGGAGTAGTTA
ATTTTATTCTGTTGATCTTTTGTTCTAACACCTGTTTATGTTGATTTTAGCTCGATCCAC
CCATCAGTAAGCAGAAAGCTCGTATGAACATCGTGGTCATTGGCCATGTCAACTCTGGCA
AGTCGACCACCACTGGCCATCTGATCTACAAGCTTGGAGGTATCGATGAGACTGTGATCC
AGTGCCTTGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCATTCAAGTACGCCTGGGTGC
TTGACAAGCTGAAGGCTGAGAGGGAGAGGGGTATCACCATTGATATTGCCCTGTGGAAAT
TCGAGACCACCAAATACTACTGCACTGTCATTGATGCCCCTGGTCACCGTGACTTCATCA
AGAACATGATTACTGGTACCTCCCAGGCTGACTGTGCTGTGCTCATCATTGACTCCACCA
AAGGTGGCTTTGAGGCTGGCATCTCCAAGGATGGCCAGACCCGTGAGCATTCGCTGCTTG
CCTTTGTTTTAGGAGTTAAGCAGATGATCTGCTGCTGCAACAAGGTATAGTAGTTATTCA
ACTTTAAATGCAGATTCCTACGAGCCTTGCTTGCTGTGAACTGATTGATATTTGTTCAAC
CCAGTTATTTTTTATAATATATGCTCCTCACTTCTTTAGTTATATCTTAATTTATAGGAG
TGCTATTTTGCTATACCTGATGTGAATTTTCAGAATGAATGACTTTGTGGATGTACAGGT
TATTTACTGCTACTGAATTCCAAATCTTGGGTGATTTCATAGCATTTCTTCACTGAGTAG
GTCATTAGTTTAACTTCTGTGAAGTTGCCAATTTTCTGTGATTCCATAGCGTAGCTTTAC
TGAGTAGCTCAATCATATATGGTACTTGTTGTTGCTCATCTTAATTTATAAGTGCAATTG
TTTGTTTGCTCATTATCTCTTGTTCCATGCGCCTTCATCACATGAGTACTAGGCTAGAAA
TTTATGCTATTTCTAATATTTGTCTGTATCATTACATACTAGTTGTTCTCAACAGTTGTG
TTGTTCTGATGGAATTGCTCTTATCTGTTACAGATGGACGCCACAGCTCCCAAGTACTCG
AAGACCCGTTACGAGGAAATTGTTAAGGAAGTCTCTTCCTACCTGAAGAA