morexGenes - Barley RNA-seq Database

Contig contig_116224
Source Contig contig_116224
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_116224 (9178 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_116224

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_1826	2	1370 bp	MLOC_1826.2	Available	Available	LOC_Os06g35520.1, FRAME:-1, EVALUE:8e-180, 13106.m03666 protein peroxidase precursor, putative, expressed
CDS Structure of MLOC_1826

Contig Sequence (9178 bp)

>contig_116224 9178 assembly3_WGSMorex_rbca.fasta
GAAATCACAAGATCACAAAATCACACCNNNCAAGATCACATGCAATCATAACATGATATA
GAATCATAAGGTATGACAAGAATGGTATGGCATGGATGCATGNNNNNNNNNNNNNNACAC
AAGGTGACACATGAAATCATACANNNNNNNNNNNCTCTCATGACAATGTCAAGGTGGTTC
CACATGGAAGGTTACAAAAAAAAGGGAAAGCTTTTCACTTGGGGCACTACATCCTACCTG
CCATCTCATAACCAATTTCCTCAAGAAGATTCTCAATCATAGTAGGTGACTAGGTGACCT
TTTCAAGATTATCATACCAAGTGACACGGCCATTAACATAAGAACGGTTCTTGCCATGCT
CAAGAAAAAAAATCCACCATGGTTGATTTCCATAGAGAAATTTGGGCTTCTACGACCTGA
TACATCAACACAATTGCAACATGCGTGAGGATCGACCAAACCATGAATTTGTTTAACCCC
CTAACACCCTAAGCCCCAATTCTACTAACCCCCAAATCCTCTGCCAAAACCCTAGTACAA
TAGATCCAACCTACCAACTAGAACACCTCTACGTGACAATGCAGCCCTTAAAGGAGGGTC
TTTTCAGATCAAAACACAAAAAAGCAAAGAAACCGAGGGTGCGGATATTTACTCTACACA
AGGGGTGGTGCCCCTTCTGCACGACGAACAGGGGCCATCGGCGCGGCTTCCGACGGGCGA
CGAACACGCGAGGCGGCAGTGCCTCGCCTACCGCGGTCGAAACCAGTGAATCAACTCCCC
TCTGTCCCCGATGATCGCAGGGGCGACGTCGCCTATGCAGCCGCTCCCTTTCTACAATCG
AAGACGAAGAGGCGACGTGAGTGGAGGAGGGGCGAAAGGGCGAAATTGGAGATGGCAGGG
TGTTTTACGCAAATATCGACAGGAACGCCCTCTCGGCTCGACATCTGGCGCGACAAGCGG
TCAACAGGTGGTCTACCGACCGCATACGTGCTACAGTGACCGTATTTTCACGTCAAACCG
TATTCAGTGACCGTAACGAACGTATTTCAAAGTTGAGTGACCATATAGTGCTTTCGTGAC
AACTTAAGTGACCGTGGGTGTATTTATCTCAACCTGAAACGTACCTGGTGCACCGGCCTC
CCGAAAGCCACCATACATGTGTGTAAATTATCTATACATAATTTACTTCATTCGTTTCTA
AATATAAAATCTTTTTAAAGAATTTAATAAAAACTACGGATGTATATAGACATATTCTAA
AATATATTTACTCATTTTGTTTCGTATGCAGTTTGTATTGAAATTTCTAGAATTATTTAT
ATTTAGGAACGAAGGGAGTAGATGCCAATTATAGTCGGGATCCTGCTACGTTACAAGCAA
GAAGTATGGTATACATCACATCTATGTACCCATAGTGTGAGCTGTGCTTACAAACAAGCC
AATCAGTCAGCCACCATAACAGTGAGCACCACCGTACATTAGGCATTAGATTAGAGATCG
TTTTCGTTATTATGATGGTACCATTCCATTGTTCTGTATTAATGATGAGGATGACACACT
TTCACAACCAACGTATATTTTGATACATTGTAGCTTGCAGGTTCACCCCGGATTGAGCAA
ACGAGCGTTTGTACATTTCGTGTTGTTTATACATACATACATACATACATACAGTATACG
TGAACCTGACCAATGCCTGGTCTTTCCAAGGCATCAACCATTATTCAGCACACTTGTTAC
GTCTACTTGCCCTTAATTTAGTTGGGCCTCCTGCAATTGAGCCTGACCTCCGTCCGCGTC
CCGGGCGACGGCAGCAGGCCGCCCATCTTGAGCATGGCCGTGACGAAGTCGGCGGAGAAC
TGCCCGGGGCTGCTGCTGTACTGCCTGACCAGCGAGTCCTGCGACCCGCCGTTGAAGAGC
TCCTGGTCCGAGTGCAGGAGGCCGCGCTGCCCCACCAGGTTCCGGTAGTAGGCGTTGTCG
AACCCGTCGGCGGTCTGCGCGTCCAAGGGCGCGAGGCTGCTGCCGCCTCCGGACCGCGGG
CACGTCCGCTGCCGCAGCGCCGCGAAGGTGGCGTTGATGTTGCGCTCGTTGTAGATGCGG
CTGCGGAAGAACTGGCACTGCGACCGCCCGATGGTGTGCGCGCCGGAGAGCGCCGTCATG
TCCCGCGGCGACAGGTTCTTGTTGCCGAACATGGCGATGAGCGTGGCGAGGCTGGAGCCG
GGCCCCGGGAGGTTCGCGTTCGCCGCGCTCTGGCTCGCCGTGCGCGCGTCCTTGCGCCCC
AGCGGCACGCTCCACGTCGGACCTCCCAGCTGCACGCGCGCAACGGATCAGCCATGGCTA
CTACAGTACTCCAGTAAAAATAAGTGCAGAACTAGGAGTCAAGCGACCGTTGAAGCTAGT
CGGTAGCGCGCGAGGGCTAACCAGGTTGACTCCGTCGCGGGCGGCGAGCGCCAGGATGTC
GGCGCAGGAGACGGTGGCCCTGCACGCAGCCTCGACCCTGGTCTTGATGGCGTCGATCAC
GTCGAACCCGCGGGCCGAGTTGGCGTTCGGCCCGGCGTTCTTCTCGCCGGTGAGCGTCGA
CGTGTCGTCCAGCAGAATGGAGCCGTCACACCCCTGCAGCCGATACATAGCAGACAAGCA
GAGTTAAACTTCAGTGCACCGCAGATCGCACGTAGAATGTAGCAGCAGCATCAAAAGCAA
AGCAATGGAACAGTAGAGAGGAGAGGAAGCTCTGTGTGTTGCTCTGCTCACATTGACGAA
GCAGTCGTGGAAGAAGAGGCGAAGGATGGACGCGCCCATCCGCCTCTCCGTCTGCAACGC
CGAGGTCATCCCCGACCGCACGATGGACGCCAGGTTGGGGCAGGACCTCGAGTAGAAGTT
GGGCGAGAGCCGCTGCGCGGTCGCCGGGCCGGCGAGGGCACAGAGCACGACGGCGAGGCC
GAGGAAGGCCGCCGGCCTGGTGGTGAAGGCGGCCATTAATTGCTTCTTCGGCTTCGATGC
GATACGACGTGACTAGCTAGAGCTTCGATACAACTCTTGTGATGTGAGCCGAGCTCGATG
AGGCGATATGATGCATAGGGTGGCATCCTATTTATAGTGCTCTAGCCACTCGAGCTCGAC
CGTAGAGGCGTAGACGATGACTGCCTAGTGCCTAGCCAGCTAGCCCGCGCCTGCATGGGC
TGGCGGGCGCGCGGTTCCGATCACGCACGTACGAAAGAAATGCTACGTACGTACAAAGTT
CTTGGCCGGACTCTGCGCAGCTGGATTTGGTTGACCGGCGATCGCTCGCTCCGGCAGCGG
CATGGGCCCTGGCTTGCCACGACGCTAACTGCTACTGTAACCAGCACGACGCTAAGAGCA
AGTAAATAGTATAGCCAGCTGCGGGTTATAAGTCATTGCCATGTCATCTATAGCCCATCT
TATAGCCAACATGTACAATAGTTCATTGCAAATGTGTACTATTTTTTTACTATATGACCC
ATCTTTCATACTCAGAAAATGCCTAGGAGCACGTGGTAGAGCTGACTTTTAACTAAGAAT
CCGCTTACCTTCTCTCTCCACTTCTCTTTCCTCTAACTAAATAAAAATATATTAATTTAT
TCCTTATAGCAAGCTGACTCTAACTGCTACTGTAACCAGCATGCGCACTCCCTAGCTATC
CCCTGCCTTGCACTCATGCACTAAATCATATCATTGCATGTGTTGGTTATCGTGTATACA
GTATTTTGTCGAGTATTATAAGAGCGCAGCGCATAGGCGTGTTGCTGTGGACGTCACGGG
TCAGTCCGGATTCCTCTGGGTCGGCGCATTAGCAGGAAATTTCGTGGACCGAAGGTTGGT
GCTGCCGTTACGTGCCGTGCCGCTCCACCACGGCGCATGCTGTTGCTAGCCATGTGCCGG
TTAACCAGACTTGCCTGCCTGGATGACTCCACGTTCAATCACAAGCAGCACTCGTCCTAG
TATATTTTAGTGTAGATTAGCAGTTTGAAGCATCCGTATTGCTGTGTAGGCTGGCCCATG
AATCAGCCCGGCTAGTTCTGAAAGGTGTTAATAATCCCTGCAAAAAAAAGGTGTTAGTAA
TCCAGCATCAACTGGTTGTAGAGTTGTACGTAAGGACGGCATTACATCGCAACTTGCATG
CGTGCAGGCCGAGGTCAAACAATTATTCTGGAGATAGGACGGTAATGTGCAGTATATAAA
ACTACAGTATTTCGCTACTCTATATACATGCATGCATGTAAAGATCAATCGCTTTCGTAC
AACAGCGAAAGGTTGGAACGTGGAAGCGTGCGTCTATCTCACTGTCACCCGCTTCAATGG
AGTTGGAATCGTCCAGCGACCCGTGCTAAACTGGGGTCAGCGCCGATAACCACTTCTTAA
CAGAAAAGCGAGAGGATTACGTATATCTTCTTCTGAATACTAAAACTAGGGAATAATATT
ATAGGATGTGGTCGATATCTAGATTCCCCTAATTAAGTGGAGTGGTACGTGGATAAAGCA
GATGCATGTGCTCGTCGGTTCATCGATGCCACTGGGATTTTGATGGTCTGGCCACTACGT
ATTTTGGCAGTTCATCGAGTTAATAAAAGTGCCTTTTATCAAAAATAGCGATCTTAGTTC
TTTTTGTTTTGGACATGATGAAAATTCATTACACGGTAGTTATTATGAACAATTGGTGAA
CTACGTACTACTACAATGGATATGAAAGGGCTTACTCCAGAATTATATAAGGATTACATC
ATCATCCATTCGCCGTGCTGATCATAACCTAGAACGAGCTAGCATGTACAATAAACGAAG
TTCAAATTGGCTTGGCTGTTATATAACTACAGAGAAGATCAACTAATTTCGCGACGATTA
TTGGCGCTCGCCAACTCATCAAAGTAGCTACCAAAAGTACGTGATTGTTTTGAATTTAAA
ATCTGTCATCATGTACCAGCTTTTGTCCATGCTAGGCTAAATTTCAAAGATGCTTGTTCC
CCGGATAAGATCATGAAGGATGTCTCTCGGCCGTATCCGGCCCAGAGTCGGTATGTACCA
AACGACCAGCATAAACAGGAAATACAAAACCGTTTGGGCAATCAGATACGTACCTGATAA
TTCAAGTAAACAAAAACTTATGTACGCTCCGATTGATGCTTGGGTATCTTGTTTGCGACA
CTACTTTTGGCCACTGCAGAGAATGGTTCTGGAATGGAAGCAATCAAGAGGGTGGTCGTT
TGATGTACTCCCTCCGTTCCAAAAATTTTGTCTTAAATTTATTTAAAAATAAATATATCT
AAATACTAGAACGTGACTAGATACATTCATATCTAGATAAATTTAAGATAAGAATTTTGA
TGCAAAAAGAGTATATACGGAAAACACTCATACAGTCAATTATATTAAGAAGCACGACGG
AAGCACAAACTAATTTTAATCCCAATTTTCGGATTGGCACCAAAAAACTTGATTTACTTC
AGACGGAAAGTTTTTACATGAGTTTGTTGGTTTTCCGAGCTTATGGCACCTTTAACCTAT
TTTTATGTTTTTCTTTTATGAGTCGGAACATCCTCTTGTTCGAGGTGTTCTGCATGGTGT
TCTTGTCGGGAAAAAATTTCTGACCCGTAGTTCAGCATCTTTCCTGCCGAGCGACACCTT
GGCGTTGTCAAAACATACACAAGAGATGAACTAGTTCCCGAGGAGATATGTTCGTAGGGT
CGGCCATGCCGCCCAACCCAAGTCTCGGGGGCTACTGGTTATCAGCTCGTCAGGGAATAA
ATTGCACCAATCGGAAAAATCCACAAAAATCATCACACGGCCTAGGTGGTGCACCACCTC
AGATGCATTATGGCATTGGAGCTCGGATGCAGTCTGGCATAAAGCTCGAAGGCAAGTGGT
TGCCTCCATAGAGAGAAAATCCGGCGTTGGAGTTCGGCTGCAAAAAGACACCTCGGATGT
AGTTCGGCATTGAAGTTTAGATGCAAGAGGACACCGCCACACGGGAAATACTTCAAATCC
CACGATCATCCCAATGATCGCTACATCAATATATAACATGCGGGCCCTCATGTATGAGAG
TTGAGACGCTTCCATAATTCCTACGTGGTATACAGAGCAGGCTCTTCCATCACATCTAGC
TTGTCCTTCTTCAACCGTCCATCCATCCCCTCTCCACCATGTCTTCCTCCAACACAACCA
TCCAATATAGACTCAACTACAACACCTCTGAGCTGCTTACCAGGTCGAACTATGTTCTCT
GGAAAGCCCAAGTAAGATCCCAAATAATGGGCACCGGCTTGTATGGCAACATGGACAACA
CCATCAAGGAGCCTCCCAAGATCATCACCGCCAAACACAAAGATGGCAAGGAACAGGTCA
TCCCCAACCCTGCGTGTGTCCCCTGGCTTTTCCAGGATCAAAAAATTGTTGCTTATATAT
TGCACAATATGTCCAAGGAAGTCCTTGTTCAGGTTGCCTCGCTTGAGACGTCACATGCGA
TATGGTCGGCCTTGGCGACCATGTTCTCTGTTGTCTCGCTGTCCAAGGCAAACAATCTTC
GAGCCGCCCTCACCAATGCCGAGAAGGGATCCATGTGGCCTCGAGATACTTAGGTCACAT
GCAATCCTTCTCTAATGATCTCGTGGTGGCGAGCAAACCCCTTGTGGAGGGGGAGCTCAT
CTCCTTCATCATAGTCGGCCTTGACATGGACTACCAACCCATCATCTCCATGCTAGACGT
CCGCACCAAGCCCATCACCCTCGACACTCTTTTCTTTCTCATGGCCAATTTCGAACAAAG
GGTCGAGATGTTCCATGGCAAAGACAATGGTGGCTTCAAGTCATCGGCCAATGCCGCCTC
ACGAGGTCGTTCTAGAGGTGGAATGGGAGGCTACCGCAAGGAAGGTGTCTCTAGTGGATC
TCGTGATGGCTATGATGCTCGTGCAGGCTACGACTCGGTGGCGCTTGCGGCGACTAAACC
ACTACTGGTGGCAGCTATGTCCCTAGTGAAGGTCAGGGTTCCGGTGGAGGCTACCACCCT
AACTTTGCTGGTTGTGGTGGGGGCTATGGCTTCCACCAGAACAATGGCGGGGCCTACCAA
AGTGGTAATGGCGGAGGCCACTACCATCATAACAGATCTGGTGGCGGCAACAACAATAAT
CGGCGCCCCCAGCAACAACAATTGAGCGTGCAACTTCCAAGGATACAATGGTTATGAGGG
CAAGTGTCAAATTTGTAAGAAAACAAATCACATTGCCAAAGTTTTCGATTGGCGTTATGC
TAGTCACAATAATTCCCCAAAAAAGAAAATTGCAGTTGAAGCCGACGTGTCATATAGGGT
TGATACCAATTGGTATATGGACACATGCGCCACAAACCACATCATTGGAGAACTGGAGAA
GCTAACCATGCACGGAAAATATCGTGGCCATGATCAAGTCTACATTGGAGCACACGGTGC
AGGTATGAAGATAAGTCATGTTGGTCAATCTCTTATCAAAACCCCCCCACAAAAACCTTG
AACTCAATGATATCTTACATGTTCCCAATGCTTCCAAAACTTCGCTATCTGTCCACCATA
TTTCTCTTGATAACAATGTGTTTCTTGAATTTCACCCCTTCTTCTTTTTTAGCAAGGATC
AGGTCATGAAGAGAATTCTCCATAGGTGTGTGTGCGTGGAATATCTCTATGCTTTACTTC
CCAAATATTGCCACTATAATAAACAAGTGTATGGTACCATCAAGCTCTATGCTGAAAGAT
GGCACAATCGCTTAGGTCATCCTTCCTTAGCTAATGTTCATCATATTCTTACTAGAAATA
ATCTCCCACTTGTTGGTGAGAGAAACTTAGAAACTATTTGTGATTCATGCCAAAGAGAAA
TAAGTCATCAACTACCATATCATGTGTCTACTAGTGTGTCTACCAAGCCATTACAACTTA
ATTTTTTCTGATTTCTGGGGTCCAACACCTACTTCTGTTAGTAGGCATTCTTACTACGTA
AGCTTTGTTGATGACCATAGCAAATACACGTGGATCTATTTTCTTAAGAAACGTTATGAT
GTGTTTCAAGTGTTCCACAATTTTCAAGCACTTGTGGAAAAAAAAATTGATAGCAAAATT
ATCTCTGTGCAATCTGACTGGGGTGGTGAGTATGACAAGGTGAATTCTTTCTTTCAAACG
ATAGGTATCTCTCACCACATGTCATCATGCACACCAAAAAAATGGTTTTATCGAGCATAA
GCATCGCCATATTGTCAAATTAGGGTTAGCTATTAAGCTTTCCTCGTTCATCTCATTAAC
ATGTGGCCTAGTCGCATTATATCCAATGAAACTCCCACTGAAGCTTACTCCATGTGACAC
CAGAATACACAACTCTTCGCGTTTTTGGGTGTGCCTATTGGCCATATCTTTGTCCCTATA
ACACTCGCAAGCTCAGTTTCCGTTCCAAGCAATGTGTCTTTCTTGGGTCTAGAGGTCAAC
ACAAGGGAGTCATGTGCCTTGATGTATCCACTAGTTATGTTTATATCTTAGGAGATGTTG
TCTCTGATGAAACTTAGTTCCCTTTCAAAAAACTCCATCTGAATGCTGGTGCTATTCTTA
GGAAGTAAATCCTTCTCCTTCCGTATCAACTTTCCTGCACCCCTTGTGTGGGTGAAGATA
ATTGCACTGACCAACGGTTGACTAATATATCTTCTACACTGCCTGAGTTTTATGTTCCAA
AAAACAGAGAATAAAATGGTGCAGAAAACGGTGCTTCTGGTTCTTCCTCGGTGACCACAG
GTGATATGGGTGTATCCCCCTCGGGATCAATGCGTCTGATTGCATGAGAAACGACTGCAT
GAACCTCGGGATTGGCAGCCCGTCAGCTGGCTCAGAGCTCCCCACCATCCTCACCTCCAC
GCCAATCTTTGAACTCCACGTCATGGCTATCCACCGAGCCGGTCACCCCGCGTATTGTGT
GCCAATTTGGAGCAGGGGTGAAACCGACCGAGAGGTATGCGTCGGTCCCACGCATCTATG
CCAGAAGGCACCCGCCATTGTTGGACGCTGTGTTGGTCGAACCAGGCAAGAGATGTAAGT
GCATCTAGTGCCCNNNNNNNNNNNNNTGGTTTGAAGACTTATAGGTTAATAGACTAATGT
GTTTGTAAGTGTACACNNNNNNNNNNNNTCGCTGAGGAGTTTGAGTTATATGATCAAT