| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_115534
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_1735 |
1 |
534 bp |
MLOC_1735.1 |
Available |
Available |
LOC_Os07g03230.2, FRAME:-3, EVALUE:3e-73, 13107.m00263 protein eukaryotic translation initiation factor 3 subunit C, putative, expressed |
CDS Structure of MLOC_1735
Contig Sequence (3375 bp)
>contig_115534 3375 assembly3_WGSMorex_rbca.fasta
TTTTTTCTGTATTTAATCGATCAGTTTATGGAGGGATGGAAAAAAATCGGTGGAACTGGC
AGTGCTAGCGAGGGGATGTGTCGTGGTTGAACCATCTGGCATGGTTGAACCATCACGACG
GCAGATCCCCTTTAATAGTAGAGATTATTTGTAGTAAGTAAGTTAGTAATCAATATTATT
CAATCAGACACAAAAAATAGTTGGAAATAACAAAGAAGATTTGAAATTCTAATTGCATCA
CCGCTGAGGTAGCGAGAACTGAGAATCATACCTAACAATTTTTTTCTTAAAGCATGTATG
TACCAACACCTTCAAGGACCAGCAGATTAGCGCCGCTATGCAAAGAGACGGGTCCAGCAC
CTTCGCTTCTGCTCCCAACCCCATCTCCAACGGGGTCCCTTCCGATCTGGGGCCTCCACA
TCGACGCCCTGCACAAGTAGTGCACACATGCATGTCCCCACCACGACATGCAATAGCATT
AGCCTGTGGGAGGCGGTGCCGGGTCTTCACATTGCGTGCAGCTCGAGCAGCCCACGCAAA
ACTCAAGCGAACTACCTATGCATTGCCACGGGGCGATAAATATAGTATGGGTTTATTAGC
GAATATATTTAATGAAATGCGCCGAGTACAACATATGTTCAGTTTCCCCACATCCAATAT
ATACATTAGTAATCTCACCCAACATTTAAACATAAATAAGTGTCATAAACAGAAGGTCTT
ATTTTTGCTGTCCTAGGTGTAAAGATCGTGTGCAATGTTTCGTACCGAGTCTTGCCACCA
GTAACATGGATTGTTCCATCATAGTCGGCACCCTTCTGAGTTTCCTTCTCATCAGCCTCC
ACTGAGTTGTCCACTACAATATTAGGGTACTGCTGCAGAATATCAAGCACAAGAAGCATA
TTATTAACACACTTCTTCCACACATTGACTGGCATATGACCAAGTAAGCTAGGGTTGACA
TCAAACTGGGCAGAGATCACATGAAAAAGAATTTCAAGTTTCTGGGCAGGTGTTTTTGCC
ACCCCTGTAAAAAATGTTAGCTGCTCCACACGTTCAACTCTCCCAGTGCCCTTCTTACCC
CTCGACGCCACAATCTCCTTGAGCTTTTTATCAACAATATCCCATGTAATCTCACTCGTG
TCCTTCAAGAACTGCTTGTCCATAATCTTATCTTTCTTGCTTAACTTCTTTTCCCAGGCT
CCGCCATCTTCACTCGGATCGTCATCATTCCCTGAATCGGAGTCAGAGGCCATCTTATCC
GGATCCACAACATCGTCACCACTGTCATCATCATCATCATCCACATCTTTATCATCTACA
ACATCATCTTCAAAGCTCTATGGGTTCTCTCTGCACTTCTGGATCAAGTGCTCATATTGC
TTGTTATTCTTCTTAAGTTTTTTGCTTGACAGCGTTTAGTTCCTTCGCGTTGCTGCTGCT
CATCTTCTTCTTGGCTTCCTTGTTTGCAAGAGCCTCAGCAAGGAAGTCCTCCAATAGTAC
AAGAGTCGTGATATACCCATTTGGAATTTTCACAGATTCATTGACATGGACAACTTTGTC
AAGCTGCTTGTTTAGCTTCTCAAAACACTCTTGCAAGCTAATCCAGTCATTGATCTTCAT
TGCATTGCGCATGTGGTCGGCAGTAGCTTTCATCTCATCATTGTGCTTGTCCTTCAACGA
GAGAATCACGCGGTGGCTCTTAGTATCAGAGTCATCACTGTCTTGTGTATATTTGTTCAG
ATAGCGGTTCTTGGACCCATCGTGTCCCCCATCACCAGCTTCTGATTTCTCACTATCACT
CCCTTGTTCTGACTCGATCTCGTCCACCTCCTCCTCAGAGTCACTGTCTCCCTAATGTTG
GGTAGAAAAAAGATAAAGGTACTAAGTAATTGCATTAGACGAGGATAACATATATGCATA
TTACTACAATTATGCAACATAGAATCTGATTCACCAGCTCTGTGCAAGAGAGAAAGCAAG
TACCTGTCCCCAAAAACGAGACCCATGGCTGCTGCTGCTTGTAAATTACCTTCAACTGTC
TTCAAGCTATGCAAGTAGACAAGTAGGAAAGATATCGTCAATACATCCAGAAGGAAGCAC
GCGGTATATATTTACATCACAGGCAATTAAGCAAAGGGGGAAATATATCCTCGGAACACG
CAAATGGCACGCTAACAATAAGGTAAAGCAATGCTTACGGAATAACTCAGATGAATGAAT
CAAACCCCTATGAGGAAAAAATAGCTCATTGAAGACAGTTAAACAATATTGGCAGAAGAT
GCAAGTTCACGTGTATGAGCAGGGAGCTGGACCTATACACCCTAAACATAACAAACCAAC
AAAACTGAGAAAAAATGTGAGATACGACGAGCAAGGGTGCAACCCAAGCAAGAGACCTCG
ACCTGACGTTGAGTCGGTGAGATCCCCGGGACTCGGCGAAGCGCTAGCCTGCTCGTCAGC
GGCTAGAGATGGAACCTAGGCCTGATGCGCGGCGGGATTGTTGGTAGGGCGCGGCGGCCT
GCAACGTCAAGTCTGATGGAAAACCAATCAGGTCGATTAACTTGCCTTGGGTCGTGGCCG
TGGAGTGGATGAGGTTCAGATCCAGCGGAGAACGGAGGATTGTAGCGGCGGAGTAGACGC
CCAATGGCGCCCACTGGGAACCGCGAGATTGGGGGTGCGCCCGCTGCATCGCCGAAGGGA
TCAACAGGTCCTCCACTCCTCCACCGTCACTACCCCGGCTGCTGTGGCCGCACGCTTCGC
CTCAGCCTCGACGGCGGGCACCTTGGACGTGGGCAGTTCATCTGCATGTGGTGGCGGCGG
CGGAGATTTTTCTCATGAGATCGAGAGGAGAGGACGGATCTAGGGCGAGAGGTGGGGGAG
ACTGGGAGAGGGATGTGCGACGTGTTTGGAGGAGGTCGACGAAGATTTTTTTTCTTTCTT
ACCGTTTTTCTTTACGTGGGCATGGGAAGAGGAGGTCGAACGAAGAAAAGGTCGAACCAT
CGCGGAGGTTGAACCATCACGACGGCACATCCTACTTTAATAGTAGAGATAAATATATCG
AGGTCTGAACACCTCATGTTCACTGATACGTCCATTTTGCATCATCCCTCTTATCAATAT
TTGTTGCATTGTGGGCTGTTATTACATGTTATGGTACAATACTTATGTATTTTCTCGCTT
ATTGTACAAGGTTCACATGAAGAGGGAGAATNNNNNCAGCTGGAATTATGGACTGGAAAA
GTAGCAAATCTGAGAGACCTATTCTACAGAGCTCCAAAAGTCCTGTAAAGTTACGGAGAA
TAGTTTTGGAATTTATAAAAAATATTGGGCAAAAAAATACCAGTGGGGATCCACCAGGAG
GTCACAAGCCAGGGG
