morexGenes - Barley RNA-seq Database

Contig contig_115533

Source Contig contig_115533

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_115533 (4648 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_115533

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_1734	1	783 bp	None	Available	Available	None
MLOC_1733	1	786 bp	None	Available	Available	None

CDS Structure of MLOC_1734

CDS Structure of MLOC_1733

Contig Sequence (4648 bp)

>contig_115533 4648 assembly3_WGSMorex_rbca.fasta
AACCCTGGGAAGTTTTTACGGCAAAGCACACCAAGGACGATGTTGGGCTTGTGGACACCC
TTGGCAACAATCCAACCCCTATAGTGTAACAAATTAAAGCCAAAACATTATATATTTGAT
AAAACGCGAAGGGTATAATGTGAGATATTATAGCGGTTACAGTTGTGATGCTTGTGACAG
TAGCCAGTCCTTCCTGCCACACATGCCTTTCTGGATGGGATCCGAGTAGAGTCGATGTCT
CGGAAAGACATGACAGTGGGGACTGACATCTCGTGGGACGAGGATGGTCAGTGAGACATG
TTGGGGTAGAAAAGGTGGTGATTCTGTCAGGTACCTCAAAGCACTTTTTTTACCAACCAT
GCAGGGAAGGATGCTCTAACATAGACTAGTATGTAACATATGCACGTTACGAGTTGAACT
TACTATACAGTTTTACACATCTTCTTTTCTACTACCATTATGTTTGTTCTTGTCTCTTGA
AATAGGATTTTGCCCCGCTTTATAAATAAAGCACCGAACAAAAGTTCACGATCAAACAAT
ACAATGTGGTGGGAATGACCCCTTACAATGCTGATCAAAAGATAAAACATGAAGCTAGAA
CAAGCATAACAATTCGTCGAGGACCGAACAAAGACCCCTAAGCTCACTCACAACGCCCCC
AAAAGGGTGAAGGTGTGAAATATCACCGTTGTCGAGTCTGAGACCACACAAATATTTTCA
CCGTGAGCCCTAGCACAGAAACGAGATCCACGATGTCGTCTTCAAGAAGCAAGCGGCACT
CACGACGTCGCGAGAAGCATGAAGCTTTCACTCGGACACTTGCATGTACCACCAACTTGA
GTCTCGGCCACCACCCCAATGAGGGCCAGTTTGTCCACACCAGATCTAGGCCCTGCCAGA
GCAGCCCTGAGCCTCCCGTCACTACATCCCTAGTCAACACACGATCAAAAGATGAAGCCA
CCACTGTCACCGTGATTCCTACCGGAAAAATGTGGAGCCCGTCATTCGGAACCGTTGTCC
CGACATCCATGCCCTTGGGCATCACTGACCATCCACGTCACGACCACCCATCCACATCAC
GACCTTTCACTTCCAACCCATCCACGTCATTATGTTTGCTTTATGTTGAGATTTAATTAA
CCCATGTGTTAATTAAGGAGAATCTCCATTATCCCTAACCGCCATGCACAAGGACGTGAT
TGTTCGCTCGTGTCTCTTCGGACTATCGCATCCCCTAGGGGGCTATATATACTTGTACTC
AACCATCAATAAAGATGGCCATTCATTTTAATCTTTTATGTTGCTCTCGCTTGTACTCCT
AACACGTTACCAGCCACGCTAGTCTCTAAGCAAGAGCAAGAGGGCCATGAACAGAAAACG
CCGTCGTTGGCTTGCTGGAACAGAAGAGAGAAGAAGATGAACTCTGCAGCGGAGCCCATC
TGGTGGACGCTCTCGGCCTTCCCACTGGCTATGGCACCGCAATCGCTCCGGGCCAAGATT
GATGTTGAATGTTGCGCCCACAACATCCAAGCAACCGCTAGCATGCGAGCATGGTCCCAT
ACAATGAAAATCCAAAGGGAAAGAAGGCTCAATCAGAATCCAACTTTATTCATGGCTATA
AAATATTTGCTTTAGCATGAACAGGAAGCCACGAAGCAAGTCTTGCCCCGACGAGGCCCT
TCCCGTGCTCGAGCCCACTGCCAGTGACAGCACTCGGCATCGCCTTGGCGCACGACGCGA
TGCGGCTCCCTGTAGGGCAACGCCCTCTAGCGCGCGGCGCCCAGCGCCGAAGATGGTCCT
CGGCCTCCTTCCCGTATCGCCCACCTGCGACGTCGTCCTCGTCGACTCCCAATGCGAGGC
GCATGTGCCACCCGCGCCCGATCACGCTTGGCCGCGACAGCGCTCGCCAAAGCCCGCCCG
CGCCTAGCCGCGGCAGCCCGAGCCTGAGCCCGCCCGCGTTTGCCCACGGCTGCGCTCGCC
CGGCCGACGCCCAGCGGCGCCACACTTGTGGCCGCCCATCCGCGTTGGCCAGCGGATCCC
CCGCGCAACGGCGCCCCAGGCGCAGCCCAGGCCGGCAAGCCAAGTCGATGTCTGGCGGTG
CCGTACGGGAGAAATCCCCACACGAACTGCTCGTGAGAAAGAGATAGAGAATCTTATCTC
TTTGCAAGTTTTGCACTCTAGCCCTTGCGGTTGTACCTATTTTTGAATATGTCAAAACTT
GTTTTGCAGTTAATTCTAACAATGATTTTATTCCTGTATAACTGTTAAATCTGGTACATA
TATTTCGGTGCCATTTTTCTGTTGATTACTAATATACTCCTGATCCTAAATTGATGTTAT
ATATTTCCACGTTTAACACGTGTCAAGATGAATTACATCGATTTGCACTTAAGATTTTTA
ATTTCTTGCAAAGATAAACTCGGTACATCTAGAGTACTAATTTGCGATTGAGATTTTTCT
TCTCTCGCAAAACAATCTCATTACGATTGAGATTAATTTTCTCTCGTAAAATATTAATTC
ACTTTGCTGAATTATCTTGCAACTTGATACAAGATCATCTCATTTAATATGAGGTCTATA
CAATTCAAGTTTTCACTTGAACATCAAGTTTGCAACATCATTACTATTCATTACAATAGT
AGTGTATTTTTGTTGAGTACGATGTATTTCAGAATGTATGTATCTCCATTTTCGCTTAAT
GTCGAGATTAATACATCTATTTGCAATTGATATTTTCAATTTCTTGCAAATACACACGCA
AAATTCAAAGTGATTTCTTCAAATTGATGCCTGGGATCACAAGGTAGTGTGTAGATCTAC
TACTTGTAGATTACCACCATTACTATTAAAGCCTACATTTTGTAATTTTGACATTCTGAG
TGCTTTGCAAAGTGCTCTCTCACACATTTTACTAAGTCATGACATAAGGCATTACGAGTG
AGTACCTACTGATTTCATCAGATAATACTCGATAGTGTTGCGGGATCTACTCCATTTTGG
AGATTATCTTCAAGGTGTCATATTTAGCAATTTGAGATTCACACTAATGGCTTCGAGATA
ACTTCTTGAAATACTCATTGATTTTGCTAAGTTTATTACAACATCAACCATGATGGTCTT
TAATTTACTGACCGTAAATTGATTATCTCAGCTTTACCCATAGCGGTAAAATATGGCTAT
AGAATTTGAGGCACTCGCCCTCAATGGCCACCACTGCCCTATCTGGGCCATGGACATCAT
GGTCACTCTTGTGTCCCGTGGGATAATGTGTGCAATCCAGGATTCACTTCTGGCCAGGAT
CACACAGCTAACAGAAAAATGTTGTCTTATACATTATAAGGCATTAGATTCAGATCTTAG
CATCTGGTGATTCTGTATCACCAATTCATGTGATACAGTGAACTAAAGGAAAAAGGTTTT
AAGCTCACTTCGACTTTCAACCCGACATCACCAGGTGTNNNNGGACCCTATGAGGAAGAG
AACATGAAGGTTGAAGATGCCTCAACCGACATATTTGAAGACTATGAATAGTCTCTCAAT
CTCTTGAGTGGTCAATATTTTTTATGTCCATTTGTGATGTTGTATTAACAACATAAATAT
TGTTGTCATCATATATTGTATATNACAATATATTGTATCAGCACTTTGGTACAAATACAT
TTATATCTATTTTATATATCTGACAGTAATTTTCATATTGAAAATCTTCATGTCTATGTA
GAGATTTCTATGGGAATTCAATCTGATGAATGATGATATGTGCCTTGTGGACATATGCAC
CACAAACTCTATACTAAGGGAAGTGAAAATTTTCCACTCTCTTTAAGAGAAAGGGGATAT
TTTAAAATCGCTAGACGCGATGAGGTATTTGTTGGCTCACCTCGAGTCATATTTACAATC
CCTCTGGGTACTCGAGTAACGTCAGGATGCTTTATTGCTCCTGGTTTAACTCGTACCCTA
CTAAACTATAATGGTGTATGTCAAAATAGTTTCCATAGCGAAACTTATGATGACAACAAA
GAGGACTAACTTCTCTTACCATATGAAAAGGATATGGCGAACACATTCTCTATGTATCAT
CTGGATTGTACTACACATATTACAAACCTGTAGCACATGTTGCACCCAAGATAGTTTTCC
AAAATGTCTTGTACATGACAAACTTGGCTTACTCGCCTTGGTCATCCAGACATTGGGTTG
AAACCGGAACTATCAACAATTCCAATAGTTCATGATTATTATGATGCTAAATGCTAACAA
CATTTGGATTTTATGTGCACTACAAGTGACACAGGGAAGCAAATTTTAAAGCTTGCGCAC
CTTAAAGTCTACGCTGAACCACTCAGACTCCTTGAAAACATCAAGTTGAGGTAAGTGGCT
CTTCCCATACATTAACTAGACCATTCTGGTATTCCATAGTTCTAAAAGACATATCTAGAG
GATGGTCTTGAGTGTATGTTTTATTCACATGAAACCATTGGCTCATTATCCTGACAATGG
TTTCGAGAAAATCGAATGGATAATATTGGGAAATTATCCTTGAGTGCCTTCTCTATGGAC
CTTGGATTGAATTTTAGCAATTTATCCTAATGTCTAGACTTAAAATGGTTTGGTAGAATC
CTTTATCCAAAGAGTTAAGCTCATTGCA