Contig Data
morexGenes
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Map Locations of contig_114375 (5129 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_114375

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_1636 3 866 bp AK251737.1 Not available Available None
MLOC_1635 1 1224 bp AK364786 Available Available None





CDS Structure of MLOC_1636






CDS Structure of MLOC_1635






Contig Sequence (5129 bp)

>contig_114375 5129 assembly3_WGSMorex_rbca.fasta
GGGAGTACTTTGCATGGCATTGTAATTTCCTTTATTCTGGCTTTCTCTTTTCCTGACACA
CACTCAGCAAGCCCATAATAAGGATCATGCATGACATATAGTTGTAGTGAGACGAAGTGC
TAGGGTACCCTTTCAAGATTCTTAAAACAACATATACCCTCAAAATAGGAATATCATTAG
AGCATGTCGCCATTACCTAACATCAAAACATCACAACCCACAGGAAAAAATAGTGGATAG
AACCAAAAATAGGAAATATTATCAGGAGGGGATCAATTGCAGCGGTGCACTTTATTACGA
TCACCAAGGAAATACTAAATTCAAGGTTCGCGAGTCATTAATTGATAGTAGCGCTTATAC
TTATGAGAAATTATGCAGAAGCACTCAAAAATGCATTCACACATTTGAAGACCTCGACGT
GGTAGGATGGCTGCATAATTGTGGGGTTCTTTCTAATACAATTCTATAGCATATCACTAG
CAGGCGATCTTGAGAACTATCTTGTATGTTATTTCTTGCACCAATTTAATTGAGATTATA
TAATGTGCATTGCTCATGTACCCAAACATCAACATGAAGCAGGATATGCTTCCATGACAA
CAGAACATCTTATCAACTAGAAGATCTTATATTCAAGAGCAAATGAAAATTAATGGACCA
CCATTAGAATAGCATATCTTGTTGCAATATATTATGACCGATATGTAGAAGAACTATTTG
GAGTAATATAGTCAATTTAAGCCAACTATCATCAGATGCTCGGGAAAGCTTCTCATGTGT
GTGCCATCTATTTTAGTCTTCTATTAGGAGTGTTTTAGCATCCTGATGGGAGTGGTTCAG
CTACTGCATGCACAGTTCAGCATAATCAATCTATCGAGAATGATTAGCTTATTTATCCTC
AGTAAGATATATGCCCCCCCCCCCCATGAGAACTCCGTGGTTCATAAGAATAACCTCCCA
ATTGACGTATTTTTTAGAAGAATTTAGTATGTGTACATGTAATTTCGAGAGTTTCCATGA
GAAAGTGGTTTTCGCCAGATATTTAGCCTTCTTCCATAGGATAACAGAGGCATCTAGTGT
AACACACGGGTATCTTCCCACAAAAAAAAAAAAAAAAGGGGCATCTCTAACCCCCCGCCA
CCCACTATCTCTTTACCCTTTTTTTTATGTATTTTGCGTTTTTTCTTCCCAACATTGCGT
CCTCTACAATTTCTCTTGGCAATAAACGGCAGCTCACTTGTCGTCTCGTAAAAAAAAGAA
AAACATGGCAAATGCTAGTGTGGCATGCTTATTAATTTAACCCGTGCAGAAAATAACTAA
CTTAAGAATACCTTTCGTCAAGATGGTGGTGTCTGAAAGATCTTCATCACAAGGTCATCA
GAGTAAGCAGTTGCAAGCAATGTCTTCAGCACGGCACTCTTAATCTGCTACGGGCCAGTC
TTGCGCACAGTACGTGTCTATGCAGTTAGTTCATCTCAGGTCCTTCAGCTAGCTTCAAGA
CGTACATCAAACTGTGGCAGACCCAGACACACATCTTAATCACCTGCCTGGATGGATGAA
GCCGCCATTCCATCAAACAGTTGGCCTGCGCCAAGGGGCTGACCTCCTGCCGCCTCCTCC
CGTTGCTACTCCACAATCCGCACCCCGCAGCATGCAGCAACGATCAATGGCCTTGCGGCG
GAGGCGATGGGGAGGATGATGGGGACGGCGAGCCGACCACGCGCTTCTCCTTGCCGGCGG
TGGAGCCTGGAGGCGATTTGTTGAGTGTAATTACATGACTGGCCCTGTCTCTGTCTGTGG
TACGTACTACATACGTACTGTACAAGATGCGAGTACAACAATCGAAAAAAGAAAAGCGTC
CTCCCATTTCCCAGATTGCCCCCAATCCGTCCGTGGCCGCGCGTCCGCCGGTGGCCGGGG
GTTCTAATCCGACCGATTCCCAGCCCCAATTCCTCGCTGGAAGACCCCGCAGCTCCACGA
CAGCGCGGGCAGACATGGCGCCCGTGCTACCTGCGCCGGCGGCGGCCCCTCCCTCCTTCT
GCCGCGTCTCTCTCCCGGCCCGCAGCGCCTTCCCCTCCCCCTCCCCCTCCCCCGTCAGAA
ACAACCTTCGCAGGTTTGCGGCCAGGAGCGGCGGCGGCGGCGGGCGTCCCGAGCCCAAAG
CAGGTACGCGCACCTCCTCATGCGCAGGTCGGGAGAGGCGTGTCGGGCTGGGTCTCTTAC
CCCGTCCTCCGTTGTTCTGCTGCCCATGTGCCAGGTGACGATGAGAGCAAGGCCGTCCTC
GACGCCTTCTTCCTCGGGAAGGCCCTGGCGGAGGCGCTGACGGAGAGGGCCGAGTCGGTG
GTGGGCGAGGTGTTCAGCGTCGTCGGGCAGTGGCAGGCGGAGCAGCAGAAGCAGGTCCAG
GAATTCCAGGTACGGCACAACCCCGGCCCTTGCTTTGCTCCCCATGGGTATTAGGGATAT
ACATATACTACTAGCGTGTAGCAAAGCGTCGGCATGGAATTCTAGAAGAGGCTTTACCTT
CAATCCAGCTAGCTACTGGAGAACTAGATGTGTTCCTTAGGCCAGCTGATGGCAGATAGG
CCTGTGAATTCTCAGTGGCAACTCGTAAGCTCTTGTACATTCAGATTTCAAACAACTAAA
AAACTAAAGTATGTATGTTATTCTTCTACATCCAGATGTGCACCGCTTGTAACCTTTTGA
TTGCACATAATCCAACCGCTTTCCACCGTTAACCATCATTATCTATGGCTCCATAATGTA
TAGCCACAATTTATTGTAGGCATGCACTTAATTATCTTCTCTAAACCTCACAGAACACCA
CTCACTTCTAAAATGCCCTTTGGGCGATAATTGTTAATACAGGAGGAAGTAGTTCAGAGA
GCCCAAAAGGCCAAGGAAAGAGCTGCTGAGGAGGTCGTTGATGATAATAAGGGGCCAAAG
ACTCTAAAGGGACCTTCAACAACCATTGTGACGCCTGCACCTACATCCCCTACTTCTCCT
ACCATTCCCACACAGGGAGAATAGTTATAAGCGGCGATGAAGAGTTAGTGCTTCATGTAG
ACTCACTTTTGTGCTCCAAGAAAGCGAAGAAATTCTCCTATGAGATATGTATTGATCAAG
TTGTCCTTTCTTTGATAGTGAATATCCAGCATGTCAACTAGAAAAATCTATGGTACAAGT
TCACAGATGAATGGAATAAAATCTGCTTCCTCCATTCCATATTAACTGTCGCTCAAACCG
ATGTATCTCCCACTGAAATACGTCTAGATACATCCATTTGAGCGACAATTGATATGGGAT
GGAAACACTACAGATTATGAAAAAAAAATGTATTTGTTGTATGATGTCGTTCTATGTGAT
ATATTATTAGGAAACAGCTTCAAGCAACCTTTACAACCTGAAACGGCATTTATCTTGATT
TATATTCGTAGTTCAAAATCCATATTTTTATCTTTCTTGAGAAAACTTCAAAAGGGGCAT
GTGAAAGGGTGGTTCGATCATCAAAATGACTGTAGCAGTAGAATCCCTAAACATGGATCA
TATTCCTTTTTACAGCTGACCTTTGCATCTGGTTCTTGGTGCCTTTATTCTGTCAAATAG
ACTGCTATTCAGTTCCCACAGAAATTATGTGTGCACTGTTGCTAACTGAATATTCTCTTT
GAGAGAAGTGCTAGCTGGATAATGTATGTAGCACAAATGTGACATGCGCTTTCCGTGATT
TTAAGAATTTGTGTTGTGTCACAAACTCACAATGCTTTAGTCCATTATGAATAGTTGAAT
ACCTAGAATGCAGGTCTTCAAGGGGAGAGCAGAACTGCAGACTAGCGCAGATTATGTCTG
GACGTTCTTGCCAATAAAATGCAATATGTTCCCACTGGATGCGCTGATGATATTGAATAC
TTGCCAAAATCATTGTGAAGATAGATGACAGGTAATTATGTAAAGAAAGTGTTCTTATTA
TTTTAAATACTCACTATCATTTAATTGTAGCTATTTTTGTTATGCATTGCATACCACCTG
CTGAACTGCGGATGAGAATGATGCTGCAACTTCTAGTTTGCTTTATTGATTCTTTTTAGA
TGCTTATGTGATGAATTGTTGAGTTAGAGCATAGTTATACAGCGATGTTAGGAATTTGTA
TATGAATTTTCTCTAGGTAGAACACATCATTGGCCGTGCAGTTTAGGCACACGAGTCGCA
GAATATTTTAAATTGGTTAAATACCTATGATTATGAAGTGTTGCAGTTTAGGGTGTTTTA
TGCCAAACTCTGTTAGATACTCTCTATCTGATTGGGTAAATGCTGCGCCATGCATGGTCT
ATTCACAAACATAAATATCTCTACATCCTTACAATAACAACCTGCATATTCGACATTTAT
TCACACACATAAAGATGTCTTGCAACTCACGACCTTGCATAGTATTCAGGCACAGGGAAA
CAAGGTACGATTTTACATGATATTGAAGCACGGGGAGAAGAACCATCAGTAGCTCAGGAA
GTATAGTAGAGCTGCAGCTGGGATCCATTTTGGAGTTCTCTTGTCAGAAGTGAACCTTTG
AGGAACTGCCTGAACCATTCAGCTGATAGTTTTGGCGTCCTCTTCTGCGTCTTGAAGTCG
ACATGGTAGAGCCCGAATCTGTCCTTGTATCCCGAAGTCCACTCAAAGTCGTCGAGGAGA
GACCACACAAAGTAACCACGTACGTCAGCTCCTTTCCTTCAAACATTTCGACAAGGTTGG
TTGGTATTCAGATACTATAAGTTAGATAACATAAGAGCAGAGCATCAGCTAAGGTCTGCC
ATATGGCAGGGGGCAGCCCTGCATTGTATCGAAATTATAGCTGGCCAAACAGGCCGGGCT
AAACGGGGCCGGCCTGCGAACCCGCCGGCACGGCACGCCATGGGCCGGGCACGGCACGAC
TTAAACGGGCCTGTGCCAGGCACGCAGCCCGCCTCGGGTTGTGCCTAGGCCTGAAGGCTA
GGCACGCGGCCCGACATGGCACGGCCCGTTTATATTTTTTATTACATATTTTTATATATA
TACAACGTATAAAATAGCCAAATAGACTAAAATCGATCCAAAAACTATCTAAAATAGGCC
TAAAATCGTGCTTAGCGTGCCGACGGGCC