| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_114196
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_1613 |
4 |
1695 bp |
MLOC_1613.2 |
Available |
Available |
LOC_Os12g40890.1, FRAME:+2, EVALUE:9e-19, 13112.m04260 protein OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed |
CDS Structure of MLOC_1613
Contig Sequence (4079 bp)
>contig_114196 4079 assembly3_WGSMorex_rbca.fasta
GAAAACATATTGAACAGATTTAAATTGATTTGTTAAGCTACAGCAACAACAGTTGTACTT
GTACTGCTGGAATAAATCAAACGACCTACAAATCTATTCATGAGCTGAACTGAACAAAAC
ACAGGGGAAAAGAAACAACAGCTACCTAATTGTTAGACGACACTGGAATCCTGCCAATGA
TGGTCATACAACTACAAATCACATCCAGTTACTATTTCAACTACTAGTACTACCATTCCT
TCAGATTCATAAAGGGTTTCAAATCTTCTGACTTGGCACTAGTACTGTTTTTGTCCTATG
TGGTTAATAACGCCACTACAGATGAACGCCTCCAGGAACTTGAAAAGAATCTAGAAGCGC
TCACCTTGTCACACAGGCCGTAGCGGTCCGCTTGTTTCCCCCTGATCTGCATGCAGCACG
AAACAAGCATCAGGCGAGTCACCGGTAAGTAGGAATATGCTGACGAGCGGCTCACCATTC
TCTCGAGGTAGGTCATCTCGCCCCCGATCTTGCGGTCCTTCTCAGAGCGCACCTTGTGCA
TGGCGCCTCCAGGTTGTGCTCGAGCGCCACCAACGACGGCACCCTATACTGCTCCCTGTC
GTCCACCGTCATGAACCTACCGACATAATAGATCAGCACACGGCAAGATCAGAACAGGCA
CAACCATGCACATGTTGGTCGGCCATGTATGCAAGTATGCTTACCTCAGCACCAGGCGCG
CGCCGAGCAGCCGCCCCCGCCGCCCATGAATAGCCCGTACGGCCGCCCTGGCACGCCGTA
GATCTGCTCCACGTACTCCCTGTGCGCAAACAACGCCGTGAAGATGACACCCCACGTGCC
GCACCAGTCGTGCAGCTGCGCCACCTCTAGTTGGAAACGACCAAAGCATGCCTAAACGAA
CCTTGTGCTCAATCTGTTCATGTAATGAAAACAATCGTCCGTGCTCGTAATCCTGTCATG
GGTAGTGTAACAATCAGATACAGTAGCGGTCTTAATATGCTGACATAACAATAAAAAATA
ACCATATCATAGTAAACAACTAAATATCATGGCAGACGATCAATAAAAGAATGTGAAGTG
ACAAAAATTATTGTTGTTCCATTTATTACGAACCATGCCAGTGAATAAGAATTAGAAATT
TGAAACCGAGAGATGACCAAAACATTGGAATTGCTTTTTCTTTTTAACAGAACACAATAG
TGAGAAACACGGCATTGCCCAACTTTTATCATAGTAAGTAGTGAATAGAGTGCACAAAAT
GGAACACCAGTTCTCAATAGAAACTTAGAACCTGAACCAAGTGATGAATACCCCTAATAA
CCTAGAAAATTCCCTAACAACCTCATGCTTTGGATAAGCCCCCTATGTATCCATCTAAAC
TAAGAACATCTAGTGTTCTGAAACTATGATAATGCCAGATAATACATCATCAGTGAACTG
GCGGATTCAACAGCCATTCAACATGACAGATGAATCAACCTAAAGCAATCTGTACATTAC
CTCTGCCTCTCTCTTTGTCTGCCCCCTCCCTCCTCTGCCTCTCTCTTTGTCTATTTTCAT
CTCCATTTGCATCGCTCGCCTTTCACACAACAGCCTCCCAAAACAGCCAAATCGAAGCCC
AAAAGCTCGCCGGGAAACGCAGAGAAAAGAAGGGAAGCAAACCCAGCAGCAGCAGCAGCA
GAAGTGAGGGGCTGAGCCAGCCAGCTAGCAATGGCGGCGGACCTGGGCTTCGAGGCGACC
GAGTTGCGGCTCGGCCTGCCCGGCGGCTACGAGGGGGAGGCCAGGAGCTCATCCGACAAG
ACGGGCTTCGCCGAGACAATCGACCTGAAGCTGAAGCTGGAGACGGCTGGCGAGGAGGCA
CCAGCCACGGAGGACCGAACCAACGTGGCTGTTGTAGCCGTCGTGGCGGCGCAGGAGGAG
CACGAGAAGGCGGCGGCGGACGCCTGCGTGGGGAACATGAAGAGGTCGCCGAGCCAGAGC
AGCATCATCACGACCGCCGTGCTCCCCGACCCCGCCGAGAAGCCGCGCGCCCAAGTACGC
GCCCGCCGAGAAGCAGGTGGAGACCCTGGCCATGGCCTGCGCCCTCAGGGGGAACGGTGT
GAGCAGCCCCGCCCTCTCCATGCCGACCACTGCCCGTGGATGCTGTCGGGTGGACCGTAG
GACTTGAGGATGGTGAGGAACGAGCCGGCGTGTTGGATCTGGATCGGGGAGGAGGCGAGG
AAGGGGTCTGGATCAGGGAGGAGGCGAGGAAGGGATCTGGATCTAGGAGGAGGAGGCGGC
AGGACCGGAGAAGAGGCGACGAAGGGATGTGTTTTCTCTTTCCCTTTTCGGTAGGAGGGG
TGGGTTGAGAGACGTTGGATCCGTGAGACGTGGGCGGCTCAGATCAACTAGAATGGGGTG
ATCCGTGGGAAGGGTAGTTGTGCGTTTTGATTGGTGTGAGATATGTGACATTAAAAATAA
TTTTGAAGTGTTAAAAATACGTGTGTTTGCGAAGCAACTATCAAAACTATACTTTAAAAT
GGCACCACTAAATTTTTCACTCAAGGTATATCATATTTCATGGATTATCACCAACTTGTA
TTCATTTTGTTTGGACAAAAAAACATTTTTCATTTTCCGAGTTTGCAAAATAAGTTTTTT
TGTGAAGGACCTACCATATATTTATTGAAAAATTAGGCCAAATTAATTTTCTAAAATATT
AGGTCATATTTAATGTCCAATTGACCAAATGGTTGGTTGTGAAAAGCTTTGATTCATCTC
TCGTGAAAAAGACAAATTTTCATCGGTTCCGCTGGAATCGTGTCAAATTTAAACTGCAGT
TGCCTCATAGTTTGCTATTTATTTTTTCTAAAAATGATTTTTAGGTACACAAGTATCTAT
TTTATCAGAGAAGCACCAAAATATTTCCAAGATTCAACGACTAGCTAGGAACGGTCATAC
CTGCCGTTCTACCGCATTTTGAAATGGCCATGAAAAATTCAAAAATAAATCAAAAAAATG
GAAACCTTCACATTGTGTCATTATATGTGACAAAGTTACTAGGTAAAATAATAAACTTGT
AATATGGCAATCATTTTAAAACAGTGTTCTCAGAAATGAGCTATCATGNNNNNNNNNNNN
NNNNTTTCAAGTCAAATGATCAATCTTATGACCACATTCATGACATAGTTTGTTCAAATG
ATCTAATATTGTGCACAAAGGTGCATATTGGAATGGAAAACAATGTTGATTAAGGAAGTN
NNNNTTTTCTTTGGACGGAAAATTCATTTCCCTTTTTTCGAGTACCCAAAATGAGTTNNN
NNNTGAAGGACCTACCATATATTTGTTATTAAATTGAACCAAATCATTTTTAAAAAATAC
TAGGACATATTTAATGCACAATTGAGAAAATAGTTGGGTATCAAAAGATTGTATCCACCT
CTCGTCAAAAACACAATTTTTCGTTGAATCAGATCGAAGCGGGTCAAATTTGAACTAGAG
GTGCCTCATAGTTCTCTCATGATTTTTTCCTAAATCATTTTAGGTAAAGAAGTATATGTT
TAATCAGAGATCCAACAAAATTTTGGCAAGATTCAACCCCTAGCTATGAACAGTCATCCC
CGACGTTTCGACCGCATTTTGAAANNNGCATAACAAATTAAAAAAAATCAAAAAAATGCA
AAACCTTAGTGTTGTGTAATAATATGTGACCAAGTTACGAGGTAAAATAATAAACTTGTA
ATATGGCAATCATTTTAAAAAGTGTTCTCAGAAATGAGTTATCGTGTGTGAAGAATCATG
GCTTTCAAGCCAAATGATCAATCTTATGACCACATTCATGACATAGTTTGTTCAAATGAT
CTAATATTGTGCACAAAGGTGCATATTGGAATGTCAAACAATGTGGATTAAGGAAATTTT
CATTTTGCTTGTATGAAAAAATAATTTTCCATTTTCCAAGTACCCGAAATGAGTTTTTTT
GTGAAGGACCTACCATATATTTGTTTTAAAATTATATCAAATCATTTTTCTAAAACACTA
GGTCATATTTAATGTACAANNNNNNNNNNNNNTGGGTGTTAAAAGCTTTTATCCACCTC
