| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_111438
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_1304 |
1 |
1422 bp |
AK364573 |
Available |
Available |
None |
| MLOC_1305 |
1 |
1599 bp |
MLOC_1305.1 |
Available |
Available |
LOC_Os07g48470.1, FRAME:-3, EVALUE:1e-45, 13107.m05190 protein retrotransposon protein, putative, unclassified |
| MLOC_1303 |
2 |
444 bp |
None |
Available |
Available |
LOC_Os02g01460.1, FRAME:+2, EVALUE:4e-62, 13102.m00066 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_1304
CDS Structure of MLOC_1305
CDS Structure of MLOC_1303
Contig Sequence (5897 bp)
>contig_111438 5897 assembly3_WGSMorex_rbca.fasta
GGTTTATATAATCTCACGGCTAACTAGGATAACTTGGAAACTAAGATAACTTGGGCTAAG
ACCGTAACTAATCCTGTCCATTGGGCCTCCTCTTTTGGTACGTAGTACCGGTCATAACAG
TACAGCAGCGGGCTTATGTGCCACCCGCGTCGCCGCTGGTCAGGGAGGTCCTGTCTGCAG
CCCACGATGCGGGCCATGACGGTATTCAGAAGTCGCTTCATCATCTTCGTCGGGATTTCT
GTGTGCCGCAAGCAAGGGCAGCACTTCAGCAGTATATTCGTGCTTGTCAGGTTTGTCAAC
GCAACAAGACGGAGCAGCTTCATCCAGCCGGCTTGTTGCAGCCCGTGACAGTTCCATCTC
GTATCTGGGAAGACATCTCCATGGATTTCATTGAGGCACTTCCTAAGGTGGGCGGCAAGA
GTGTGATCCTGACCGACGTGGACTGTTTCTCCAAGTATGCACATTTCATGCCCTTGGTGT
ATCCGTACACCGCTGAGTCTGTTGCTAAAGCCTTCTTCTCCAACATTGTCCGACTTCATG
GGTTTCCAACTTCCATCGTTTCGGACCGGGATGTGGTTTTCACTTCGGGCTTTTGGAAGG
CTCTGTTTGCCGCCGCAGGGACGCGGTTGCACATGAGTTTGACCTTTCATCCACAGTCTG
ATGGACAATCGGAGGCCGTGAATCGCGTCATCACTATGTACCTGGGTTGCATAACAGGGG
ATCGCCCACGACAGTGGCTACAATGGTTACCTTGGGCAGAGTACTGCTACAACACTTCGT
ACCATTCAGCATTGAAGGATACTCCTTTCAGGGTGGTTTATGGACGGAATCCCCCTCACT
CCGGGACCATATGCCGGGCGAAATTCGCAATCAGGGAGTGGAACGACAGCTCGTCGACCG
CGATCAGTTCTTACTTGACATCCTTGAGCGTCTCCTTCAGGCAACACAACAGTACAAACA
TTACTATTTTGATAAGCATCGGGCCATTTCTTTTGATAATGGTGAGCGGGTTTGGCTACG
TCTTCAGCACCGACCGGCTGCATTCCTTGGAGTAGGCGCTCAAGGGAAGTTGGCTCCCAA
ATATTATGGGCCTTTCAAAGTCCTCGCTAAAATTGATACGGTTGCTTACCATTTCGAGCT
ACCCCAGCCCGCATTCACAATGTCTTCCATGTCGAGTTCCTGAAGAAATACCATGGTGAG
CCACCGGAAGTTCCGCCGATGCTTCCCCCGCTGTTTGAAGGCTGAGTACATCCAACACCT
GTCCAAGCATTGCCTGCTCGTATTGCTCGCGGCGTTCAACAGGTGCTGATTCAACGGGAG
GGCCAGCCGGCGTCTGCTGCACCATGGGAGGACGTCACCACCTTCTGTGATCGTTATCCG
GGTTTCCAATGGAGGGGGAGATGTCATGTGGGGTCAGCCCTATAGGCGCAAGGCAGGCCC
CATGCGGTCTGGGCCTGCACCGGCCTAAACTATGGCCTAGTTTAATTATAGAAGTTGTGT
TAGATTAGGAGTCTGGGTTAGTTGGAAAGGTTTAGTCCCGTAGAAGTTTACCCTACCAAC
TTCCAGTTAGAGTAGGAGTCTAGTCTTGTAATCAAGCTTTACATAGCGAGCCTTTGGATC
AATAAAATTACATAGAAACAATCTAATCTCTCACCCCTATGCTCCTGCGCCCCGGCGCCT
CTCCTCACCCCCTTCTCCAGCGATAGGCCGGCGAGGAATTTGCCCTCGGCCTCCCGTCTC
TCAGGACTACAACCTCCGCTCCAACCCATCATCCCGTGACATTCTGGCATAACCTTCGAT
TGGCTACAAGATGCAGCGCAGAAGCATGATATGAATGTGTGCCAACTCAATTTGTTACTT
GCATCTCAATTTTCATTGCGTGTGGAGGATAAATACTAATACTATCTCCTTTAATATTTT
GGCTATCCCTCACACTATGAATGACGCTACTGGGGCGAAGGAGGACATCCAGCTCATGAG
GCGGCTTCACATGGTCGCCGTTATCCATTTCCTGGATTGTCATGAGGTGCTCGTGTAGCA
GTACAAGAGGGACTATGAGGAATCGCAGAAGTACAAGGAATGGAGGTTCATATTTGCGAA
GGCAAATATTATACATGAGAATTGGTATTAAATAAAAAAAGTCAATGATGTGCAAAAATG
CTATTATGGAGATGTAAATTGTGATCCATGTCTTTGTACATAGCAGTCATCTCTAAGTCT
CAGTTTGTTGGTTGCACCATCTTACTTTCATGCCATAATTTACCCTTCTGTTTTCTGTGA
AGAGACAAAATTATGTTCATTTGTTTGGGAACCATTTTTTGTTCATAGCTGGTTGGTTCA
AGATTTTTTTTTTTAAACTTCAAGTGCTTGCTGTAATTTCCATTGATACCTTGTGTAGTT
GTGATGTGTTTAATGACGAAAACAAGTGTAGGGGCATATCTTTATGAAACAATAAATACA
TTAGACCTTATTTGGTTGTGTATACTTTCTTGACATCAGAAGCACTTGTTCCAGAAAAAA
GATAGCACTTACGGCACCACATGGCGTATGCTGTATGTGCACGCTTGCAATTGAAAGATT
TTCTAAAGTTTTATCCGGTTCTAATTGCAATATTTTTGTTAACAATGTATGCACTGAACC
TGAATTAAGAACTTGACTTTCATTTAGCTTGTTGATAGTGGTTTCCATTTCAACCTGAGC
ATCTTCAAAATATGTTCATTTCTGATGTTCTTTTTAATATTGATTAGTTACACATACAGA
TGCATATAGAGAGTATTATCATACAATATGTTAAATATTATGTTTTACTCCCTCTGTTTC
TAAATATAAGTCTTTTAAGAGATTTCACTAAATCTCTAGTACGAAGCAAAATGAATAAAT
CTATATTTTTAAATATGTCTATATACATCTCTAAAAAGACTTATATTTAAAAATAAAAAG
AGTATGTGTTTATAATAAAGATGTACATTGCACATGTAAGCTTACTAGTAGCAGAAAAGA
ATTCCAAATGCGTGGGTGTCGCATAAGAAAATCTTGCGACGGGTGTCGCAGAAGAAAATC
TCGGCACTGTGTGTGTGGCCTCGATCCATCTCAGTTCTCACACCCAAGTCCTCTTGGCGC
CACGCCTCACAGCCAAAGATGAGCCACAGAACCGTCGTCTCCTCCTCCCGGCTTCCAACT
CCTCACCGCAAAGATTCAATTCGCAGAGGAACAGAGAGCTCAAAGCTACCAGCTAGCTAG
CTAGCTGAAATGGCTCTCGCCCACCAGATCACCAACCAGCCGCTTCTGTCCTTCCCGCCC
TGCCTCCCAAGAACTAACGGCAGCAATTTGCGGACGGCGACGACGCAGTTTCTTGGTCAC
AGCTGCTGCTTGAAGCTTCGGGATACGGCGAGGAGCTGCGTCGTAGTCTGCGCGTCTTCA
TCGGCACAGGCAGAACCCAAGTCCGGCGGTGGGGACGGGGATGGAGGCCAAGAGCCGTAC
GAGGAGTACGAGGTGGAGATCCTGAAGCCATACGGGCTCAAGTTCGCCAAGGGCCGCGAC
GGCGGCACCTACATCGAGGCCATCTTCCCCGGCTCCTCCGCCGAGCAGACCGGCAAGTTC
ACCGTCGGTGACAAGGTTATCGCCACCAGGTCAGTCCGCTTAGATGATCCTCTCACACCA
GCCAACCCACAACAATTTCAGAATGACCGCCAGATCAAGATTTCTTCCGTGTTGCTAACC
GATGGCAAATTCACAGTGCCGTCTTTGGAGAGGAAATCTGGCCGGCGGCAGGGTACGGCC
AGACCATGTACTGCATCCGTCAGAGAGTTGGCCCTCTCTACATGAAGATGCAGAAGAAAT
TTGGTAAGAACAGTTAGTACTGTATTTACCTGCTTCATTGTGAGTCTTTACATGACAGAT
ACGATGGTGAATTCATCAGTTCAGAATTTGACTTATAACATTAACCGAGTCCAGGGAAAT
GGGATGGTGTTGCTGAGCTCTCGGACAAGGAGGTCATCAGGGCTGAAAGGAACACGGGAA
ACGTCAGCACTAAACTCAGAGAGATTCAGGTAAGTAATAGGATCATACTTTACTCTCTTT
TTTTGTTAGCCTGGACTTCTGACTATGCTCTGTACTACTAAGAGGAACAACTATCTGGTT
GAGTAACACACACTAGTGAAACACGTACCCACGAGCAGAGGAGGACACATGGGCATACTA
TGAGCTGATATGCTCTGTACTACTTCTTCTTTTTCGCGAATACGCAAAGATTACCTATCA
TTGCATTGATAGGAGAGGTGAAAAAGTATAGTTTTCGGTTACACACGCGTACACAGGCCG
GCGCGGGTCCAAAGAACCGGAGTAGTGAGAGGTAGGGGCTGCTCGTCCCCAATATATCAA
AAGGGTTCTATCTCTCCCGCGGTGGATGGCTAAAGGTGATCGAAGATACAATCGTTCCTA
TGCTTTCAGATCGCCCATGCAGTGAGTGCGATGATGGAGTGGGCGTTAGGGGATGTGGAA
CATGCAGTGGTCCACCATTCCGCGAACGGTGTGTCCGTGTTCGGGATCGTAGCAATCGAG
CGACACCATGAGAGGACCTCGTGCCATACGTGTCGCAAGAACGGACAAGCAACGAAGAGG
TGATGTATGTCTTCGGTAGCCTGGTCGCAGAGTGCACACCTGTCGTTGTGTGGTAGCCCA
CGTCGAGCGAGACGGTCCGCCGTCCAACAACGATCCTGCAAGGCAAGCCACGTGAAAACC
TTGATGCGTAGGGGGGCAGGTCTTCCATGTTAACTTGCAAGACGCATCGAGCGTAGAGCC
GTGGAAGAGGGCCAGATAACAGGATTTGGCCGAGTAGATGCCGAACCCCGTCCACCTCCA
GCGCATCTCGTCCGGGCCAGCCTCAAGAGTTTTGTACCGCACTGGAGTTCAACGTACTGC
ACAAAGGCCGGGGGGCCAGGGGGCCAGTAATATCGAGCACCCAAGTGCGTCCAGGTAGCC
GCTCTCCACTATTTGGTCCGGACGGCTGCGTTTAGGGACCAACGCGTATACAAGCGGTGC
GAGCTCTGAGATGGCCTTGCCATCAAGCCAGGGGTCGATCCAGAATTTGCAAGTCCGCCC
ATCTCGTACCTCCGAGGAAGTGGAGGCGCGGAATATCTGTAAGGCCACGGGGTCGTGTGG
GAGGTGAAGCTGGCTCTAGGGGCGCAACGTGTTGGTGCAGTGGAGCCATAGCCACCGCGC
GCGTAGCGCGACACCAGTGCGCTGTAGGTCACGGATCCCCATGTCTTCGAGGAAAGCGGG
GCGGCACATGCGGTCCTAGTTCACGCGACACTGTCCACCTCGCGTGTTCTTGCGCCCAAC
CCACAAGAAACATCATCTGGTTCACACGTGTGAGGATGATCTTGTATACGGCAATGGCGA
CTAGGATATGGATATGCATGGGGATAGGACATGCCAACATAGGGCGAGGCGGTCCTCAAG
AGAGAGGATGGAACCGAGCCAAGTATAGAGAGCTTCTTCTCCAATCGCTCGACGAGCGGC
ATCAGGTCCGATGTGGACGGCTTGCGGATGGATAGCGGGAGGCCGAGGTACCTCACCAGG
AACTGGGCGATTGGGCAGGACATCTCGGCCACGATCGTGTTGACGTGCTCGTCGGTGCAG
CAGATGGGCGTGGCGGAGCACTTGGCGAAGTTTGTGCGAAGGCCCGAAGCCGTGGCAAAC
ATGTTGAGAAAAGCCTCGAACAGTGCAGATGTCGTGGGGGTCGATGCTCTGTACTACTAA
GGAAGCTAGCTTGCTTCTTGCGTTGATGGAGTGGAATAATTTACAACGGGAGAGTGCAGC
TCCTTATATAGGACTGCCGAACCGACCTAAGAGCATCTCCAACAGATGCGTGAAAAGGGG
CGCGCGCGGTAAACCGT
