Contig Data
morexGenes
Links



Map Locations of contig_111127 (6630 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_111127

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_1273 1 598 bp MLOC_1273.1 Available Available LOC_Os07g33997.1, FRAME:+3, EVALUE:2e-49, 13107.m03461 protein 60S ribosomal protein L44, putative, expressed
MLOC_1275 1 735 bp None Available Available None
MLOC_1274 1 437 bp None Available Available None





CDS Structure of MLOC_1273






CDS Structure of MLOC_1275






CDS Structure of MLOC_1274






Contig Sequence (6630 bp)

>contig_111127 6630 assembly3_WGSMorex_rbca.fasta
CCCAGGGCGGGGGCGACGCGAGGGATGGTGAGACTGTCTTGACCACGTTTGAGTGCACCC
ATGAACCAAGTACATAAATAGTGCTGCTAAAATGAAAAAAAAGAAACCATTGTCGGAGCG
CGGGCCGAAGGCTCAACTACAACCGGAGCCGGATGCCATTCAGGCTCTGATATGAGTGAG
ATTTGAGCCTTAGAACGGCTGCCCCAGGAGCCACGCCGACTGCTACCTGGTAGAAAAAGG
CGGTGGCCGCTGCCATGGGTTCTTTTACAACAAGGCATTTCGGATCTGATCCTCGAGCCA
AGCAATCCAACAAAGTTTCAGTACTACTAGCAGCAAAGGTTCCACGTCGAAGCCTTCACA
CCGCATACAACATGGAAACATGGAGCATACGCACAAAGGTCATCACCAAATAAGTAGACG
AGTGAGACCAAGAGACCAAGGAAGTACGCTGTCAATGAATCACGAGCTTTGCACGAGAGA
CAACAAGAGAATGAAATCGGAGGCACCAATCAGCCAATAGAGCCTATGCCACTGCCTTAT
TCTGTTATTTGTGAGTCCAAGCAAGTCGCGGAGACCTATGCCACTGCTTTGCACGAGTGA
GACCAAGAGACCAAGGAGAATAAATATATAATCAAACCAATAAGACACAGAAATAATGGC
AATTCATATTTAAATAACTTTAGCTTGAAAAGATAAAACAAACTCTGGTACAAATAGACT
CTGACACTTGTGGGCCTGCAACAAGTGATTATAATGGCTTATTATCTCGTTTAGTCCAAA
CCAAGTCTTTATTACTACCTCCGTCACAGTTTAGAAGGCAAACACGTGTACCTAGGTCGT
CAATTTAACTTATATAAAATCTATTGTTTAATATAAAAATTNNATCATTAGAAAATAGAA
CATCTAAAATTTTTAATGATATATTTTTTATAATATATGCTTACCATTAAGTTGATCAAA
TTAACGATCTAGGTACACGCGCCGGACTTATAAACTGAGATGTAGGGAGTATGTATTTAT
GTTAGAAGGATCAGTATAAATAAGAAATCGATCAAAGAATGCAACTAATTTTAAGCCTTT
AAATGTGACAAACCCGGATGTGAGCAGGGGCCTAGGAGTTGGTTCTAAGGCCCATTAGGC
CCACCAACCCGGATCAGAACGCCGTGCGTGCAGCGGCTCATCTGAGCCGTCCGCCTCCCC
AGCACCCAAACCCTATAACTACGACGCGAGAGCCCTCGCCGCCAATCTTCCTCACGCTTC
CCGCCGCCGACGCCAGCCGACCGAGCGCGCTCACCGCACCGCCGCCGCCGTCGCAGCCAT
GGTTTGTCCCTCGCCTCTGCTCCCCCGTCCACCCTGTTGTTTCCTACATAGAGTGAGAGA
GATGTGTTTCGCTGCTTCGCGACCGCGGCAGATGTGCTCGGGTTCACCAATTGCTGCGTC
CTTTCTGCTGCTCAGTTGCGTTCGTGGGTTCTCTGCCATGAGCAACACTGATTAGATGCC
CGCTTCAGTCCATTCCGTTCAACCATGGGGAGAAAATGAGGCATTTGCCTCTGGTTATGT
TTTGCTCTTGCCTTGCCCTGTCATGCTGCTGCTATTGGAATTCTATATGCGCTTGTCATG
CTGCTGCTATTGTACTTCTCTGTGATGATCAAATCCATGATAAAATCCTTCTGCCCGTTC
TGAATGCCAAACCGACTGCATGTACCATGTTTGTTTTTGTCAACACTAGTATATTACTTC
CTCCGTTCCTAAATATAGGTCCTTTTAGAGATTCCACTAGGAGACCACATACGGATGAAA
ATGAATGAACCTACACTTTAAAATATGTCTATATACATCCGTATGTAGTTTTCTAATGAA
ACCTCTAAAAAGANNNNTATTTAGAAACAGAGGGAGTATATTGTAATACATTTAGCAAGT
CTGACGTTAGTTTGGGATATGACGAAGGATAATTGCTCCATGTTTCTGATAATCATGTGA
TGATCTCCATTGAAACACCCAATACCTCTGATTCTATAAAAGCATAGGATTGAATTACTC
TCCATTCCGTTTATTTTATCAGGCCTTGCTGTTTTCTTCTCCATGTGCACACAACATCTC
TTGTGTACTGATGAGTCGATTGTTCACTTAATTCAGTACTGCTTTAGATTCCTAGCATGG
GATGTGCCTTAGATATGTAAACTGTTGTGATAATGTATATCAGGCTGCTCCTCTTATTTT
GAGAAGACGGAATGGATAGCTCATCGTGTCAGTCAAGTCTAATTTAGTTTTCATTCTGTG
TTAGATTGACTGTAGTTTGTATTCATGCATCTTCAAAATATGTAATATTGTAAGTGATCT
TGTGAAGGATGTGCTGCATGCAACTTGACATTGCATGGTACATCTAAAACGCAATGGGGT
TGGCCATATTGTGGACTATTCAGTGATTTCGTTTTGTGCACTTGGAATCTCAGGTTTTTG
TGTACTTCGCTGTGCTGACCTAATCTAGAACTAGGCTTACAGGTCCATTTGTTTTCATCT
ATTGCCCTGACCAGATAACTATTTGTCATTAGTTACTTCTGGTTTTTTGCCTTAACTCAT
TTTTTTATGCAACTAGTGCTGTAATTTCAATGCTTATCATGTAATATTTGATATTTTAAC
TATGTGGTCCTATGATGGCATGAAATCTTTGAGACCTGATTATTCTAATGATGACAACCA
TAAGCATGTTTCTGAGAACCTAATTGAAGTTTGCACCAGACATTTTTTTAGTATTTTTTG
AGCATTTGCTGAACTTGCTTCTGGAGTTCTTTTTAGCTATTGCAATATCCTCTCAACTTT
TATCCTGTTTCACGCAAGGCCTATGTTAATACTAGTTCTGTTGCAAATGCTATGTAGGTG
AACGTTCCAAAGACCAAGAAGACCTACTGCAAGAACAAGGAGTGCAAGAAGCACACCCTT
CACAAGGTCACTCAGTACAAGAAGGGTAAAGACAGTCTGTCTGCCCAGGGAAAGCGCCGT
TATGACAGGAAGCAGTCGGGATATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGGTA
CAGCAACATCTTTGTGTGTGATTGTCTATCGATCTGTCAAAACAATACATAGTTCAATCT
TCTCCGTAAGAAGATACATAGTTCAATCTTTTGCACAATCTGCTTATGGTGTGTCTGTTT
AGTCTAAGATCAGATAAAGTTTAAAACCAGTTGTGCAATGCTAATTTTGTGACCTTTTCT
TCAGGCAAAAACCACCAAGAAGATTGTGCTGAAGCTGCAGTGCCAGAGCTGCAAGCACTA
CTCTCAGCGCGCCATCAAGGTTTGTTGCTTTCATGTTGAACCGGACATCTACTTTCGTTC
ATGTTGTGCTTTGCTCAGTCTGTCTTTATTCCTCTGTGCAGAGGTGCAAGCATTTTGAGA
TTGGTGGAGACAAGAAGGGCAAGGGAACATCACTCTTCTAGATTTCTTTCACCTATCTGT
ACTCGTTGTGGTCAAGAACTATTACTGCTTGTCTTAATGTATCGATGTTATGAGTTGAAC
CAACCAGACATTGTCCTGTATCCAAACCTGTTTATCTGGCATTTGAGCAACGATTGACTT
TTTTGCAAAATGATCCTTCGTAGTTTGAATCCTCTTCTAATCTCATGCATTGCCGTACTG
TCGATATGAATGTCATGTGGCCTGATCGGTATAATTTGAGCTGTGCCGCAGCTGTTTATA
GTTCTCTATAATTCCGATATCCAGACAATTCAGACAAACGGCTAATTACAAAGCTAAATA
TTCAGAGATCTTCTCATGATGTGCGACAAGCGTTCTTGATAAAATCCTCGCCAGCGGTGG
AGCAAGCTACATATTCAAACAAATGAGCAGTCAAGACGTTTAATCCACGCGAGCGGTCAA
ACATTGATCGGTTCAGATACCATTGCTGCTCATCAAGACGTTTAACTAGCCCCTCAAGCA
GTCGAGCAATGCATGCTTTTCATCTTGGTTTTATTTTTTCCTGAGAAATTCTTGTTTCTT
TTTAGCAGAACCGATCAGGCCGAGTAATAAGTGAGGAGAAGACCCAGTTTACAGAAAACA
AGACTGAAGAGAAGGCCCATCATCTTTCTATGTGAGCGTGGGCCGAGGCGTTGGTTTGGA
GGCCCAATTAGGCCTACGAACCACAGCCCAACCAAATCGGATCAGAACGACGTTCACTGG
CCGATCCGAGCCGTCCACCCGCTAGGGTTTTCCCCTCCCCATCACCCCATCCCTATAAGT
ACGAGGCGAGAGCCGCCGCCGCCAACAATCTACGGAGATCGGGTTCGTCCACACACCTCC
GCCGCCGTCTCCGCCGCTGCGAACCGGAGAGCGAGGCCGACTCCGACGCCGCGATGAGGG
CCAAGGTTTGTACTGCCGCCCGTCGTCTACCTCGCCTGTTGTTTCCTGCTTCGCAACCGC
GGTAGATCTGGACATGTGGTAGTGATTATCGAGTGTTCGTTCTTGCTGTTGCTGGTGCTC
GCTTGCGTAATTAGTGGTTCTCTGTGATGATCAACACTGATTAGATGTCCGATCCAATCC
ATTCCATTCAACCGTGGGGACAAAACTGAGGCAAATTTGTCTGAGAGAACTTGCTAGATT
ACTTTGTGCAGTTTCTGTTAGCTGATTTGATGTTTTTTCCTTGCATGCTTGTTCGTGTAG
TTCTCTGTGATGATGAAAACAGATGACGAGTCCGATGTAATCCATTCTATAAAACCATGT
GGACAATCGAGGCATTTGTCTGAGAGAACAGCGTTTTATTAGCCAGTGTTTTTCCCAGCT
TTTTTTTAAGTTTAATTGCGTCGGTTGGCATGATGAGGAAGACAAATTGATGTCCGATCT
ATTTGACGATAAAATCCTCCTACTCATTCTGAATGTCAAACCCGCTGCAGATCTCTTTGT
CTTGCTCAACTAGTTTGTAAATAGCTATGACATTAGAATAGTTTTCTTTTTGCCATGCCG
AAATGGTAGTTTGGAACATGATGAAGAACAATTGGTCCGTGTTTCTGAAAATCACGTGAT
GATATCCAATGAAACACTCAATCTTCTGATTCCAAAACAAAGGTTACTATCTCTTCTTTT
AAATGTGAAATTCTTGTTATGTCCATCAGCATTTCCTAGATCATCTATCCAATTTATGCT
GATGAGGTGCATGGTTACTATAATTTGCAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAG
AGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCGCCTTGGAGCAGGGAATGCATC
ATCTTTACATCAGGCAGCTAGGCACCGAGGGATGACGGCATGATCTAGTGATTCCTGATG
TGTTTGCTGTTATGGCTGTGGAAGTTGTTTAACCTGCGTTTGGTCAAATTTAGCTGTTTA
ATACTAGTCTGGTTATGTTCCAGGACTGAGTTTTATGTAATGTGAGGATTATGCGTGGTT
GTGACTGAATTTTATGCAGCTATTAATTTTGCAGTACTCTGAAATAAGTCCCTGCAGTCG
ATCTTGTTTGATGTTTTGCTGTTCTTTCTCTTCCTCAGACTATAGAATTGCAGATGATAA
ATATTTGTGTTTGCTTTTCAATAATCATATATAGTTGAAAAGAAAAAATCATACAGCCAT
TGTGTATGAGGTACGAAAGATTGTGTGGATTGTAGTCCCTGACAGATTTTAAACTGTGCG
TTTTCATTTAGGGCCTGAATCAAACATAGCTTTATCTAATTGACATGATGCAAGAAACTT
CATTTGATCCGGTAAACTTCATTTGTGTTTGACATAGCTTCCTTCTCAAATGCAGAAGCG
GTGACCCGGGGCAGTGCGGATCGGAGCTTCCGAACGTTTCATAGAGTAAAAATGCATTTC
TGAAATCTTTTAATAAAGTGAATCGAGCGGAATTCCGTAGGGACCAATTTTGCCGTTGAT
TGCAGCACCATAGTGCCGTTATTTTGTTTGCCTTTGCGTTTCCAAATGAAACAAGTTAGC
CCTCTTCCAAACTCCTTTATCATACTATATACGTACTGTGCAATGCTAAAAGGAAGGAAG
CCTGATGGCTGGTAACTAGCCGCTAGTTGGTGGTTTGGGGTGTGCGCGGTGGTGCTGCAG
AATGCGCTGCTGGAGTTCTTTCAGAATGTTCAGAATTTTTTCTCGTCCTGATTGAATTCA
TCAGTAAAGTTCAGTTCTTCAGCCTTATTTTTTCTGAAGAAAGTGTACGAGGCAAAGATG
TAACGTTAGTTTTCAGAATGTTCAGACTTCCGGTGCTCCTTTTTTTTTTCTGAAGAAAGT
TACACGGGAATCTCTTGTCAATTTCGTTTGTTATTCGTTGAGATCGTATCATATGTCAGT
TTGGTGTGTGGTTGTGTACAGTACAGAGAAATTAAAAGAAGACACTCAAATTTAGTACTG
CATCTAATTTGATTTTGTAAGTCTTCCCTTGAGATTTGGTTTTAGTAGTTGAATTTTGGG
AGGGGCTGTTGGTGGAGAAGACACTCAAATTTAGTGTAGTTGAATTTTGTGAGCAGTTTT
TTTATAAGACACTCGAAGAAATCTTGCAGAGTTTAAATTATAGGCCAGTGCTATGCACTG
GCGCGTCGGCCGAAACTTTCGGCCGGCCGC