Map Locations of contig_109939 (3832 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_109939

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_1162 1 796 bp MLOC_1162.1 Available Available None
MLOC_1163 1 770 bp AK354961 Available Available None





CDS Structure of MLOC_1162






CDS Structure of MLOC_1163






Contig Sequence (3832 bp)

>contig_109939 3832 assembly3_WGSMorex_rbca.fasta
TTGTGTTGATTGCTTATTTTCGTATAACTTCGTATAANNNNNNCTATACGAAGTTATTAC
GGGCGACGCGAGGGGGGCGTGGCTGCACGGCCGCGTCCACGTGTGGGGGTTGCGGCGGCA
CATCGGCAGAGCGACGACCACCCCAGGCGCGGGAGGCATGACCGGGAGCGACGACATCAA
ATGTCGTTCGGGCAGTCCCGCACCCGGTGCCGGTGGTGGAGGCAACGAAAGCAGAGCCGA
GTGAGCTCCTCCGGGGACGGGTTGCGACGGCGCGGCGGGGACGTAGGGCTGGGGAGATCG
TCCAGGCGCGGGCGACGACGACGATGCCTGCGACGGGGCTGCTAGAAGCCATCGATGTCG
AGCACGGGTCCTCCCGACACACGATGCACCTCCGAGCGGGAGCCAAGGTGGTCCTTGACG
GTCGGGCGAGCGGCAGGTGCGGTGCGCCCTGGGGCAGCAGTGACCGGCGGAGCTACGGTA
GGCGGCGGCGTGCGTGCGATGTCTGTGTACGACCGCGTCGAAGACTCGCTCTCCGAGCTA
CTCCAGCGCTCCCCATGGGAAACACACTCGCCGGAGAGGGTTGTTCGACGGTCGACAGGG
TCAGCAGCGAGGGCGCCCATGGCGCAGGGCCAGAGAGAAGAGGGAAGTGGGGCGGCTTGC
TTGCGGGGACGACGGCGGCGGGCGAGACGGGGGAGCTAGGCTAGAAGGTGGAGGCGGAGC
AGGGAGCCATTTGAACAACACTGAGAAATAACAAATAGCTGCAGCAGTTAGGAGGTGCGT
GAAAAGAGAAAGAAAGCTGACCTCACTCGTAACCAAGCGTCTGTGCTATTTCCATTTGCT
TTGTAGTACCATCAATATACAATGTTCTTTCAGTTGAAGTATCACCAGGAGGAAAATGGA
AAGGAATGACCTGCAGAAGGATTTTTGAGGACAAATCAAATATTACTATGGTAATGATGA
AGATAATACGAAATATAATACTAACTAACAAGGAGAAAAGGGATAAAAATAAAATAGATA
ATTATGAAGATGAAAGGAGCATGAGTTCTACATGAAGATGAAAGGACCATGAGTTCTACT
TCTAGTTGAGCAAAATTAGAACTTGGATGTTAATTTACTTATTAAATTATAAGAAAAATG
AAAAAAAGGCAACAACAAAACGCATTACATGGTGCTAAGTTATTAGGGAAATTCAATGGT
AAGTTATGCTAGGTTCAGCCAACAAATTTATGTTAGACTTTGCAATAAGAATTTTTGCGA
ACCTGTATACAAGCTCCAGATTTGGCCTGCAATGATTTTTTTTGTCTCGCCAAAAAATAG
TCGGACATGGAATTAATAGGCAAGGTTTTTCACCATCAAAGAAAGTGTAGTCCGTGAAAT
AATATCAGTTGGGAAACTTACAAGAAACCCCCATTGCTATAATAGGGCGTCGTATGATTT
TCAAAGTCCGACAAACAAACCCAATTCTAGAAAGCAGTCAGTTTACCTTGTTGTTAGCAA
TTTGCATATGGAATTGCTCAACACTAGGTTGAGGTGCATTGTACTTCCAATTAGGGATAG
TGCGAAATGAGCCAGCATGAGCCTGCAGAAGGTCACATGACAAGTATGGTTGAATAAATG
CATGCACAACTAAATCTGAAGTCGTGACCATAAGAAAGATATCACAGTACCTCTGCAAGA
ACATCACTTATCAACTGCTCAACTCTGCTTATGTGGTCACGAGTGCCCAAAAGATCAACC
AATTTTGTCTGTGACCAGGGTTGAACATCCATGTCCCTTGTTACTTGGATCTTTGCCCCT
GACTGAAGTTGGATATGCTTTATAGGTTCTCCAGCTTTTCCAATGATAACACCAACCTAA
AAGAAGTTACGAACATTATCAGTTAGCAGAGAAAAAAAACTACACATCATGCAACCTTGT
ATCAACTACAAGAACGCAGAAACCAAACGAGTAATCTCCCAAGTAGCATACCTTCTATTT
GGGATATCAATCTTTTTTGTTGTACTACCACTCTGGTATCAATCACCATAAGTAGAATAC
GGATGTGTGTTTCCTGGAGAAGATAAGGGTGGGATGGAAGAACCATGGCGTGGAAACAAA
ACAACAACTCATTATATTACTAATAGTTGTAGATCTATTGAGTGAGAAGAACAAGCTTCA
TGTGGACAACATAAAATAGGACAGTAATACCAGTACATAAGTAATAAACTAATAACATTC
AGAGCTGACTGAAAATATTACTGGAAATCACATCATTTATATACTACATGCAATAATCAA
ATATTTGGCTCTATGCCGATAGACAATCACCAATGCAGTATGTTACCCTTTTTTGCATGT
TAAAAAGGAACCACAGAAACTATTGTCATTTGTCGCATCTAGCAGACAGGGGCCAGTTTC
ACAAGACAATGATTAAAATATTACACGATATAGCAGAATTAAACTATGAATACTATTGAT
CATCTACACAAGATATAGTTGCCAGAATTATTAACAAACTCTACTAATCATCCTTATAAG
CCCGTGATAATATTGGAGCTCATTATATGGAGATCTAAACTTCCTAGCGAGGATAAAGGA
ATTGCTGGACGTTTTCTTGTTGCCTAGATCCTAGCACGGTTAAGCTTCACTTAGGCGGGC
TATTTTTCTTCCATTGCTTCCTAAACATATCGCTAAATCGCATGGATCGCAATGGCATAG
CAATACTCAACAGCTAAGGCCAACTTGGCGGCTGAGAGAGAAAAAGGAGATGATGAACTG
CACACTCACATGATATTTCTTCACTACTTGTCACTAATGAGATAAAAAAATTAAGGGCCG
AGTAATCGCTAAAAAGAAAGGTAGTTCCTTCACCAAATTAATATTTATCATGCCTTCATT
ATTTACAAAATGTTAACTATGTGAGATAAAGAAGTGCCTATGAGTATGTATCTCAAAGTC
TGAAAAATGAATAGCCAAGAAACAACTATGTCGGCCTGTCACTGGTTCAAAAACCCCACA
CTACATATTTTTTGAACTAAAAATGCAGACGAAACAATGTTTTCTCAAGTTTAATTTCAC
ACGACCAATTCATTGACAATATCATAAAAAAGATATATTGTGACCAGCATTTTTTTAGAA
AAGGAGGTTAAGACCCCCGGCCTCTGCATCAATCGATGCATACAACCATCTTTATTACTT
ATTCATCAAAGGTCTGGCAAGAACATACATCAAGCCACCCGAAGCCCCCACTTACACCTA
CAAAACGCGATAATGTGGAATGCTCCAACTCCCCATATCTAAAACCGGTGTCGTCTCCGA
TCCATCTACATAACGTATCGGAACTAATAGCCGGTGCAACAGACCTAAAGCATACACCAC
ATGCACACGTTTTAGAAGCCGCCATCATCATCGAACCGCTGACCCATCTTCAGAAGAGAA
ATGCACATCATCCTTGCCAGTCCGGCCATCCGTCGACGCCACCAAGGCGCCCAACAGCGC
CACCTCCCTGCGCTCGTCCAGCCACACGCGAAGACTCTGTAAGATTTGTCGTGCGTAGCA
CCTGCCGAACAGGCATGACAAAGCGTAGCACCTATCGGCCAGGCATGACCTGACATTACC
ACCGAAGCTCCGTGCAGGACGAAGACGCTCCACCTCCTGCCTGTGTCTTCCAGCGCTGCT
CCACAAACGATGCTCTCTAGAGAGGAACGACACCGAAATGTCGCCATCGTCCGATCTGGA
AAACCAGATCCTAGGGTTTCCCCTGGAGCAGCACGAGTGGATCAACAATAGTTACAGGAC
GAAGCCTTCATCAAGGTAACGGCGCAGAACGCCGCCATCGTCCGCCGTCGGC