morexGenes - Barley RNA-seq Database

Contig contig_109805

Source Contig contig_109805

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_109805 (2266 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_109805

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_1151	1	1806 bp	MLOC_1151.1	Available	Available	LOC_Os04g47870.2, FRAME:-1, EVALUE:2e-98, 13104.m04863 protein PINHEAD, putative, expressed

CDS Structure of MLOC_1151

Contig Sequence (2266 bp)

>contig_109805 2266 assembly3_WGSMorex_rbca.fasta
GCTGTGATAAGTGTGTGAACCTGATGTTGGAGTTACTCATTTTGTATGAATCATGTTTTC
TCTAAAACTTGAAGGTAGGCATATGATGGCATTTTTAGTTCAAATCAGTTGAGTTTGATT
GATAAAATTAATATGTATACCACGTCAATATGCGAAAACTCAAAATGGCTCCCCAAATCA
GTTGAGTTTGGATTGATGAAATTAATATGTATACAACTTCGATATGCGGGAACTCAAAAT
GGCTCTCCAATATGTTCTTTCTATATTTGTAGCTCTTAATGTTATCTTTCTTATCCAACT
ACAGCCACATTTGCTGCTTCCATGAAAACATAATGTTGTAGTTGAAATTACACATAATCC
ATTAAACCTTTGGAGTTTACTCCTTGCAAATGGCATTACATTCCACGTCGAATCAGAGCA
TAACGCTCACAGGAAAACGGATTCAATCGTTTGCTCTTTATAATTAGCCTATGGTACAAC
ATAACCTCATGTAAAGCTTGCTTTATCCTACCAACACCTACAAAACTGCCTGGCAAAGGC
ATGTTGTAATCACTCTCATACACTGTGGTCTTACAGTAGTAACCTAGGGTGGCAAATAAA
GGTAATGTAACCGGTTTGCAACCTTAGTTCTCATCATCCCCATCAATGCTGGAGAGCATG
CTCTTCAGTACCTCGTAGGTCATGAACGCGATCCCAACGCTAGGAACAACCTTCTGATAC
TCAGGGACTATGCCTCGGTAGAAGCCATGAGGACCTTCCTTTTGAAGGATTTAGCGGCTC
ATTAATTATCGCATCCGCTCGATGTGCTTGCTCCCTCTGGCATGGACAGCCATGCTGCCC
ATCTGTAATCCATTTGGGTTAACCATATGCCTTACCCGACGATGCCTAAGATAACTTGCT
TAATTAGTCATGCTATCTGTCCTTGTGCATTCTGCTGATTTGTTGTCTACGCATATTTAA
CAGGTGAAGAGCTTCTTGGGGTGCATCAGGTTGCCTTCCAGCTAGAAACATAGCCAAATG
GTGGAGATCAGCACGGGCAGCAAACTTGATCACCACCCTGAATTGTCTCTCATGCCTTAT
AAAACAAAAGGAATGTTAGTACAGAACTATGAACACAATGAAGTACAAATATCACAGCAA
CAGCATACCTTGGTGCGACTTGACCACCACCAAGGCTTTCTTCTTCATCGTGCAGAGTAA
TTTCAAATGTCCTTGAAGGAAACGGCAATGGACCAGCCGTATATAGGCTCTTCCTTCCAT
CATAGGCAGGTAGCCGTCCATCCAAATGAGAATGTCTATACAGCCTAACAAGTTCTGCCA
TCACAACACGATTGACACCACGTGATGTAATTTGTGGAGTTATGGAGACCTGATGAAACA
GAATTGGTGATCAAAAATTACAAAATAAAAACTGCAGCAGGAAAAAGGAACTTCATGTAA
AGGACATACATCGTATTGGTGAAGGTCTTTATCAGGGAGCTTAGCAAAGAAATGGTTTGC
CTTCACAACACACCTATCCCCATGTGTACCCTTTCCAGGGCGCAACGAAAATCTAACTGA
TTTGCTTGATGCTGGTGCCAGTTGGCTGCCTTGGCTTGTTGAACTTTGATCGACGATCGC
AAAATTCTGAAACTGTTGCTGAACTTGTCCACTGCTCACCTCTGCCAAAGACTGAGAGGA
TGAGCCAGCTCCCGATGCAGATGGTGAAACCATCGGGGCTTGATATTGGACATGGGGGGG
CTTGGTGCAGCTCGGGAACTGTTCTTGATTGACCTGGAGGAACATTACGTCCAACACTAC
CTCCCCTGTGCCCACCATAGTATGGCTGCGACACTCCACCACCTCTGGGGCATGCACCTC
CACGTCCCTGATAGTCACATGGTTGATATTCAGGTGGGCCACCACCCGGATGTCCACGCC
CCTGATAGTCACGATGTTGATATTCAGGTGGACCGCCACCGAGATGTCCACGCCCCTTCG
ATGTGCTTGCTCCCTCTGGCATGGACAGTCGTGCTGCCCATATGTAATCCATTTGGGTTA
ACCATCTGCCTTACCCGACGATGCCTAAGATAACTTGCTTAATTAGTCATGATATCTATC
CTTGTGCATTATGCTGATTTGATGTCTACGCATATTTAACAGGTGGGCTGCCAGGGTGCT
AGTAAACAGCGTTGAAGCCTCCCGGCATGGACGCAAGGTGCCAAACTGCCAATACTGTCC
ATCTATGATTCGTTCCTGACTCAGGCCAACTCTTCCCTGCCGGTGT