| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_109725
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_1137 |
7 |
2330 bp |
MLOC_1137.2 |
Available |
Available |
LOC_Os01g65200.3, FRAME:-1, EVALUE:0.0, 13101.m14968 protein proton-dependent oligopeptide transport, putative, expressed |
| MLOC_1135 |
1 |
1106 bp |
MLOC_1135.1 |
Available |
Available |
LOC_Os12g09700.1, FRAME:+3, EVALUE:5e-60, 13112.m01031 protein Jacalin-like lectin domain containing protein, putative, expressed |
| MLOC_1136 |
1 |
830 bp |
None |
Available |
Available |
LOC_Os05g12760.1, FRAME:-3, EVALUE:2e-15, 13105.m01388 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_1137
CDS Structure of MLOC_1135
CDS Structure of MLOC_1136
Contig Sequence (10854 bp)
>contig_109725 10854 assembly3_WGSMorex_rbca.fasta
GTGGGGTGGGTGGGTGCGGAGATGGTTATAGATGATTGAACACATGATGAAGTTCCCTCT
ATCTACCTCACGTGACCCTGCCCGTCTGGGTGTTGGAATCTAAAGGAAAATATTTCGTCA
AATCTGTATATAATACCATTAACTTTGGAGGTGTGGTTTGTTCTATTGGAGATGACCTTT
GAAAAGTTCTTTGCCCTCAAAATATACATGTTTTCATGTGGCTTTGTGTATATAATAAAG
CGCTGACTAGAGATAATTTGGTTAAAAGAAGACAAGTAGGTGACATATCATGTTCATTCT
GCAATGAAAATGAGTCCATTCAACATCTTTTTTTGGATGTGTGGTAGCCAAGTGCATTTG
GTCCCTAGTTTCAGATTTTTTCAATCTTCAAACAATGACATGTTTTGATGATGTTTGTGT
TGTTTGGCCTTTGCATAAAAGTAAACTTGCACTTAACCTGGTGGTTGATGCATCCTTGTG
GAGTATATGGAGACTGAGAAACGATTTCTATTTTCACGGATGCTCATGGAAATGTTTGAA
CCGTGTTCTACTCAAGCTGAGGGGTGTCCTTCATCGTTGGATGGCACTCTGCGACAACAC
ACATGCGGAGCTCCTACGACGTTGTATCTTACTGATGGACAAGCATCATGGGGAACTTCT
TCTAATATCCTGGAGATGATCTCTGCCCCATGGTGCTTGCATACAAAAACTTACTAAGAT
CTTAGCGCATGAATGTAATAATATGAGTATTTAACAAAAAGCTATCACAGTTGGGGGTTC
GATTCCACAGAACTACCACTTTCAATATGTCAACAAAAAATTACCACTTTCGGATAGTGT
CCGATTTAAACATGTTTATGACAGGCGAGACCCACTTGTCAGCATTGGCATGGCAGGAAA
GTCAAGTAGACAATACTTAAAAATAGAAAATTTGTTCAATCGACTTGCAAGTCAAAATAT
CTTATCATCTGCTCCAGATTGGCGCATTGCACAAGTAGACAATGGATTAAAAACAATTAA
GTGTTCAATCGGCCTGCACCCCAAAATATCTTATCATCTATGTGTTGATAATTTGGAAAT
ATAAATAGAAGGACCTAGATTGGCACAAGTAGACGCTGGATTAAAAACAGTAGAGTGTTC
AATCGGTCCGCACATCAAAATATATTATCAAACAGTAGAGTATGTGTTGTTAATTTGAAA
ATATAAATAGAAGGATCCAGATTGGCACATCGACGTACACAGCACAAGTAGACGATGCTG
GTATTTCTTTGCTTGACTTGCTACCAGCCGGTGCGGTCATTTTGAACATCATCTTTTTTG
TAGATAAGTAATAGGAGGATGTGCACTCATGAAGCTGACCACGAAATAACTATTCGTGAG
ATCGGCGGAGCACCTAATCAATCCATCGGTCTCACATTCTCATGAGGAATTGTCCTGGGC
ATCTAGGCATAGATCAGCTCTATAAATTTGCACCCTTAACCCACATCCATTTCCAACAGC
CAACACACTTACGGTTCAGCTCAACAACCAGCCACACATCTCCTGTAGCTACTATACCCT
AGCCAGCCATGGTAAACCCTAGCTATTTTACTAGCGCTCCGGTTACCCAAGAGATCCACC
AGAATGAGCTCAACTTCCACTTGTACATGTATCAGTGGGTCGAAGGGTCAGCACAGGTTA
ATGAGAAACAAGTGGTGAATATAGCGCATCCCACGGGGTTTGGAGCCATTTACGCCAATG
ACTGGACCATGTATGATGGTCCTGGTCCCAATGCGAACCTTGTCGCACGTGCTCAGGGCG
TGCATACCGGTAGTGACATGAACCTAGGGGACTCATGGCTTGTCTGTCTCAACATTGTAT
TCGTCGATCAAAGGTTTGACTCACTTCAATCCTCCAGTTAGGGTGGTTTTCGTATGTGTT
CCATTTGAAGATTTCAAAATTTTCAATTGTTTCATTGTGATCTATCATGTATATATCTTT
CGACATTTGGTCTAGGTTTCGGGGGTCTACCCTGAAGGTGGTCGGAAACTATGGAGGACT
GCCTGTAGATGAATGGGCAATCGTCGGTGGGACCGGAGAGTTTGGATTTGCACATGGTGT
TGGCACCTTCAGAAAATATAAGGAGATGGGCAATGGGAACATGAGGGAGTTCAATATTCG
TGTTCGCTGCCCCACTTTGCAAATACCACCGGTGAGTTGAAGGGCATACTCCTGCTAGCT
TACTATCTTTCTTATAATTTGGAAATATCCAAATTTACGTATCAGCGTTTGTAAGATAAC
CGCGCTACTGCATCACACAGGTGCCGACTCCTCCCAACGACAAGGAGGGGCCGTTGGGTG
GCAAAGGAGGGGAAGCTTTTGACATCCTAGGTCATCCTCAACGCCTGGAGAGTGTGACAA
TTCGAAGTGGCGACATCATTGATTCACTTGCGTTCTCCTACATAGACCAAGCTGGGAAGA
AGCAAACCGCTGGTCCATGGGGTGGTAATGGCGGGCTCGAGGAAACGGTGAGTGGATACC
AGATCACATTACATCATTCCAATGTCATTTACACGTTTTTTCGGTTTGCATTTTGAAATC
TCTCTCTTACACCCACTTTGTTAGTGTGCGCCTTTCCCGCGAGGCAAGGCAAAACAAAAT
CTGCAAATATATATATAAACTTGTAACACGCGAACCTACATATATATGCTCTCTTCTATC
TATTTATACGAACAAACATGTGTTTACTTGGTGATGCCATTTCGTCTGCAGATCACGTTT
GCTCCTACAGAGACTCTGAAGAAAGTTTTTGGAGTAGTCGGTACCATTGGAGGACACACT
GTCGTTACCTCGCTTACCTTTGTCACCAATATTAAGATATATCCAACTTTCGGAAAAGGA
ACAGGAGGTACTACTTTCAGCATACCCGAGAAGAACGCTAGTGTTGTGGGCTTCTTTGGT
CGCGCTGGATCATATGTCGACGCAATTGGTGTTTACATCGCAAATTAGGACAAGTTCCTT
TTCCGAAGAATATAATCGTGGGTCTAGGTGAAGCCTCCCACTTTCATTTCAACTATTCCA
CAAATAAAATGGACACACGTTGTCATCACCACATGTATACTTCTATTGTTTTCCTTTTGA
GACTTTGAGTTCGTACTTTCGTTGTAATCAAACATTTTCTTCAATATATAAGTGTGCTCC
CCTTTCGCTCAATCAGCTGAGTGTTCTCAAGTCTCTAAGAAAACAGAGGCTTGATTTTTC
CAATTAAAATCAGATTGATTGAAGGAAGCATCATATACCATCCGCTGAAGTTAAGGAATC
ATCAAGGGTTGTATCACTTTTGTTTTCTTCAAACCCAAAACACCATTTGGATTACAAGTG
TGGGATTGAATCCCGGCCATCTTTACAATTAGTCTACACAATTTAAGGAAGATTCAATTC
TGAAAATAAAGAAAAATAATGGTGTCCTCTCACAGGGTGCTTGGATACGTTTTAGTTCCA
TGACTAAAAGTAGTGGGACTAAAACTTGCTAGCCTCAACCATGCTTGGATCCAAATACTA
AAGAGGCTAAAATCAAGTTAATGAGCATTTATTATCCTCCAAACCCTTCAATCTAGAACT
CGTCTGTGTCAAAAGAGAGGAGTTAAATGAGGAGAGAGAGGACTAATCCACATTTTAGTA
GGGGTACCCCTGACTAAAAGATTTTAGTCTCAAGACTAGTTTTAGCCTTTCTTTAGTCAG
GGGTGTTTGGAACTTTAGCCTCTTAAAAAAATTACTTTTAGTCAGACTAAAATAAGTCCC
TTGAATCCAAGCACCATCTCAATCTCTCTTCATAATTGGTACGGGAAAGGGAGGCTCCTC
TCAGCCATAAGATTTGTGGCCGTCCGATGCAATGCTCTTGCCGATCATGCCCATTCGTTG
TTGCCTTCTGTTTCGCTCATTCACTGCCGTTTAGTCGAACAGCTAGAAAACCCAGGTTCC
TACCTATGATTCTCTGAACTCACAGTTGAGTACTAAGAGGGTGCTTGAATACGTTTTAGT
CCCATGACTAAAAGTAGTGGGACTAAAACTTGCTAACCTCAACCATGCTTGGATCTAAAT
ACTAAAGAGACTAAAATCAAGNNNNNNNNNNTTTATTATCCTCCAAACCCTCCAATTCAG
AACTTGCACGTGTTAAAGGAGAAGAGTTAAATGAGAAGAGAGGACTAATCCATATTTTAG
TAGGGGTATCCCTGACTAAATTTTTTTAGTCTCAAGACTAGTTTTAGCCCATCTTTAGTC
AGGGGTGTTTGGAATTTTAGCCTCTTAAAAAGACTATTTTTAGTTAGACTAAAATAAGTC
CCTTGGATCCAAGCACCCTTTGAGCTTAGCATTTACCACTGTACTGAACAGAAGAGTTGA
TACACCATTTTAACGTATTTACAGAGCACCGTGCGACATTGAAGAAACTGTATTTTCAAA
AGTTCCAATGCAAAAACTCGTTGTATACTGCACACCTCAGAAATCGAATCGACAGACGCT
TAGTACAACAATTGGGAGAAACTTCATGAACCGAATGCAAACCGACATCTCAACTCAGGA
CATTGATGAACTTCCCAGCAGAAATTCTCATTTGATCCGGCAGTGTGATTGTTGAGGGAT
CTAGCACCGATCTTGTTCGGCCGGCTGAAGCAGCAGCGTCCAAGCAGGCCCGATCATCCG
CCTCAGCTTACGGTGGTGACTTTACCTATTTACGAAGAATGTCCTATATGTACGACAGCC
TAAAGCAAAGCTTCAGCCCATCTTCCAGATCCATGGACTTTGAAAAGGCTATGGGCGGTA
ACCCATGGACTTCAGGCATCTCAGCTGCCAGTCATTGTTCGGAAATGCCCTTCTTCTTGT
GGATATACACTTGTGAAAAGTAAAGAAAAGCAGCCAGCCCAAGAACGCTGAGCACGGCCA
GAAGCCAGTAGAAGTAATCGAGATGGCCTCGGTTTAGATTGTCCGAGAACCAACTATCTC
CGCCGTTGCTGGTTACCCAGTCAATCGCATACACCAGAATGCTACTGCCGAAGCTCCCGG
CCCCGAATATGCTCAGGTATAAGGCAAGGCCCATACTGCGCAGATCCTCCGGCACTTGGT
CGTAGAAGAATTCTTGCAAGCCCACCACTGTGAACATGTCCGCCAGGCCGGTCAGGACGA
ACTGAGGTACCACCCACCAAAAGCTCATCGGAATCGTTGCTTCAGGTTTGTCCACTAGGC
CATATTCTCTCGCTACCCTGAGCCTTCTCATCTCCACGAGGGCCGCGACAACCATCAAGA
TCACTGAGATGGCTAGTCCGGTTCCAATCCTTTGCAAGGGTGTGATACCACAGGGGTTCT
TTGAGTACTTTCTGGCTAGCGGAACGAGTATCTGGTCATATATAGGAATTGAGATGACGA
TTGACACGCTGATCAGGCTTTGTAGGGCAGCAGCTGGTATCTGTAGGCTACCTATCCACC
TATCTAGTGTACTTGCTTGTTTAGTGAACAGCGTCATCCACTGGGCAAAAACAACTGCAT
AGATTAGGCAGGTTGCCCCTATCGGAAACAACTTAAGCACTGACTTGGCTTCATCAGGGA
AACATGTCATTTCTGCATTATCCTTGGCTTCCCTGGATGTCGATGTTGGCATGCAGTGAG
AATCATCAGGCGATCTGCCAATCAAAAACACAGTGCACACACACACACACCAAACAGAGA
ACATATATAGTCAGCATTTCGAACTCCATGATGTGTGATACAAAGTTTCAGAAGTTAGAA
TAATCTTACCTCCCACACCATGATGCATGCCAGGTCCTAATTAATGATAAAAGGTATTTG
CGAATCTGTCCCAATAAACTTCCGTCACTTCTTACAGGGTAAAAGCGGTAAGTCCTGGTC
CCAAGCCAGAAAACTGCAAGAGAAAGAGACATGACGACACAAGGGATTCCAAACCCATAC
TGCCAGCTTATGTTATCTTGAATGTAATTCAAGATTGAAACTGTAACAAGAGTGCCTCCA
TAAGTCCCAAAATACCACCAGTTGAAGAAGGAACTCCTCGAGGCATATTCTTGAGGGTCG
TTCTCATCAAATTGGTCTGCCCCAAATGCTTGCACACAAGGTTTGTGCCCACCTTGAGCA
AAGGCCACCATATACAGGGAGATGTAGAAGAAGGGTAAATGAGCAGCCGAAGTCGAGTAT
AGAGCGGAATCCATGCGGTCTCCAAATTTTGCTGGTAGTTGTGTCGCAAGAATTGATGAC
AGTGTGAGCATGCCCAGGCCCTGGATGGCGGATTTAATTGAGTGAAAGAAGTATTTTAGC
ACAGTGATGCATAGTGTGTGAATTAAATAATTTTCCAAGTAGACTACAAAAAGGGGAAAT
TTTCCAGGCTATTACATGGAGGAAAAAAATCGTCAAGCAGCTAGTATGATGCCTGAGCAA
GTATTGCAGGATTTTTCTTTGAGTAAGAATAGTAGGTTTGCCTACTGCATGTATTTTTAT
ACTTTTAAAATATCCAAAATTTACAGGATATATAGAGGGAAAAGAAAGGGAGAAGATCCT
AGTTTAAGTCCCAAGGCTTCTAAAAACACAGATTACAAAAGACTTCAACCCAAAATTGAG
GACCTGAAAGGGATTTCTTCTTGGCTCTATGTACTAACAGGGATATTTCTGCTTTGAACT
TGGACCTTCATCTGTAAAGGATTGGTGAAATTCCGTTGAAAGCAAAGTAGTTAGTAGTCT
AGATTGCACAACTGACCAACATGATGATTTCCATGGGCAATGGTAGCTGAACTATCTGCC
TTAGGTCTGCAATTATGATCTGATTATCCATATTTTGAGGAGTCCCTTCTGTCAATGAAT
TTGTGAAAACGTTTGATCCGTAGAAAATCATTTTGCACCCTCAGGTTCAGGACACCTAGT
CCTCCTTGGCTTTTTGGCTCACAAACAAGATCCCAGGCAGCAAGAGGTTGATATTTCTTT
GGGAGATGCTTATTCCTCCATAAGCAATGTCTATGTACTTATCCAGCGCATCAATAACCC
ACTGGTAGAGTTTTTTAGGGAGCTGAGATAAAATATAGGTAGAGATGAAAGCACAGAGTT
CACAACTCGAAGTCTACTTCCATAGCTTAGATGGTGAGCACAACTAAGGAGCCTCTTTTG
GGCTCTGCAAATAATAGGAGGCATAAGAACTACTTCTGGGTTTGGTGGTGCTCAAGGGGA
GGCCAAGGTAATTGAGTGGCAAGGATCCTTGCTGACATTGTAGGGCTTCATTAAATAGGT
GCACCCTGTCACCAGATATATTGATGGGAATGAGATTGGATTTGGCATAATTAACTCGGT
CAAGTTGCCGGAAAAAAAATTCTAGTACAGAAATTCCTAAGGAATTCTGGTTCCATAAAC
TTTTTCTTAGCTTCCTGGAAACAAAAGCAAAGCCTTTCAGTCCCAAATAATGGAGCAATC
ACACTCCTAAATATTATTGTAAATATGCATCCATTAACCACAGCAATTCAGACCTCCAAT
GTTCCAATTTAAGATATTCCAATGCTATTTGGCCATGGGCGGAAAGGAGGAGGTACTAAA
CCACCCAAATCGTACGCTGGGGATCAGGAAAAAACGTGCTGGATCAATAAAGTGGAGGCT
TGAGAGACACCAAGCCAGCTCAATGATGGCAGGTAAGAAAAAGAGCAACATAAAGGAAGC
CAGGCCATGAGAGAGTTCTTCATGCCACTTATTATATCACTGGGGAATCCAGTACAAAGA
TAAAAGGCCATACACCAAAAACAAGATTTGCTAGAGACTGGTAACAACATAGTCTGAACT
TGATCATGAGCTCTGCACTTTATTACTTCTTGGAAATCTTCTCAGCTGGTTAATTAACAG
CTTTTTAGGAGGCCTTCTACTACTTTGCTTGTAATTCCAAAACTAATAATTCCAACTTTT
TCCCTGCATTTTATCACTTCTTAGATTTCTTCTTAGCTGATTCATCGACACCCTTCTTGG
AGGCCTTCTTCTTGCTTGTTTGCGAAGCAGGCTTATCTTCACCTTCAGTCTTTGACATCC
CAAATCTGTTGCAAAGATTCTGCAATACCTTGCTCTTCAGGTGGGGTGCATATGATGCAA
CACGAGCTAGATAATTTCTGTCAAAACAAGTTTTAGGTTTATACCCCTGAACCAGAGCTT
TGATTCTGTCACTTGTTCTAACTTCTGAAATCACAGGAGGGGTTTTTCCTTGTCTCCTTT
GAAGGTGAAGTACAGAAGTGGTATAGTGGGATATTTCTTCCACAGAAAGATGCCTGGGAG
CCTCTGGAGTAGAGAAGCTACAGCCGTGAGTTGCTTGACAGGTCAAGGAGAGGCTACAGC
CCTGAGTTGCTGGGTTATTTAGCTGAATTGTTCGCTGAAATATGTATCTTCTGGTGTACT
TATATTGCATAATTCGGTTATTACTAAAACAGGGACGTTAGTACTTGTACCCAGATCCAC
TGAAGCAAGGGCCGAGTTTTGTACAATGTAGTTTGGAAATCAAAATCCACTCCAAAGTTC
AACAGTCAGTTGGATTTCAGGAAGTACGTAGTAAAAAAAGCGTATCTTCGATTGTGTATT
TTACAGAAGGGCAATAGTCCTACCTGAATTTGCAATCAACAGATAAAAATGTCGTGCCAC
GGTTAACGCAATGGGTTATCGGAGTCGGATCATCACCGCTGACTGCAAAAAGACAGACAT
AAAGGCTAAATGAACTCCAGAACTCCATCAAGGGCTGACTCCACAGACCACAAGATCCCC
ACTCTCAGTAACACGCTCGCTAGAATGTGCTCCTATGTTTTCTGAGATTATGCACGAATT
CTTAGTAACATAGGACTTACATGTGCGATACTTATGGCACGTCTAGATGTGCTTTAGCAA
AACTGATTCTATATATGGCAAATTAGCATCGACAAAAAGGTTCGACTTACAATTGGCAAA
GTCAATGTCAACTACGAGTAGTATAGCTTTAACTTTCCAGATTTTAAACAATCCAAAAGT
ACAGGTAGCAGGTGCTCGACATCAGTTAGCAGCATGCGATGACCCAGACTGCATGCTACT
CGCTGCGACCACGTGAGAGCAGAGCGGCACGGCGTACATACCAGGATGTAGAGCAGAGAG
GCGCAGACTACGGTGCGGTAACGGCCGAGCCAGGAATCGGCGACGGCGGCCACGCCGAGC
AGCGGCAGCAGGAGCGCGACGCCGCTCCACGCGTTGATGGTCGCGGCGGCGGACGCCGTG
GACTGCCCCAGCGGGCCGGTGAGGTAGGTGATGAGGTTCCCTGAGATGCCGGTGTAGGCG
AACCGCTCCGAGATCTCCACGCCTGCGATACCGACGGCAAGCGGGTCAAAGAGGATCGAG
GCTTCGGGAGCACGGCCGAGTGCCTTGCTGTTGCTTCGCGGTACCGATGATGAAGAACGC
GGCAGGCCAACTGCCGGAGGTGAGGCGGGAGACTGGGCGGCCGAGGTGGTCCACGGCGGC
TGCCGGTTGGGGCAGCAGGGGATCCGCCGTGGCGTCCATGGACGTCCACCTGTTCCCCTC
CTCTCCACGGACTGGGATCAGAGCATGTCACGCTGCAACATGCGGCCTCCCGTCCGCCCT
TCAATCTTCATCCAACGTCCCACAGCAATCGAAGGCAAAAAAGATATTTCCAAACAATAA
ATTACACTGGTGAAATGCATCAGACTACTGTTTTCAGAGTTTGTTTAATAGAATCATCAA
ACTACACAGGTGAAATGCATCAGACTACAATGGTTGTTTTTCTGAACTGGTTCAGCCCAA
GAAAAATACCAAATGACCTATACTCTTTGTTTGTGCTAAATGTAGTGTCAAATGTGACAA
CATCGTCAAAATGTGCATAGTCAAGTAGAATTTTAGCATCGATCCAGAAATATGTTGGCT
ATATGCCCTCACTATCCAACTGCAAATGGTATTTGAATGCTGCATTCTCAGCTTGCTTGT
CACGAAAATAATTCAACATACTTCCAGCATGTCCATAAGCCAACTCCCGCTGCCGCTTTC
TTCGCAAATGGTTCTTTTGGTCACGACACGTGTAACTAAGGTTGTTAGTACCACCAACTA
GACGACAAGCATACTCATGTGAAGCTTTTGGCATAATTCCAGAATCATCGGCTGTTTCTA
TCTCGAAAGCTTGCACTTGTGAAATCTTCCTTTGTGATGCTAACAAGTGGCGGGTTTGTG
CCAATTGAAGGCGGTGATTGTGCTCCAAAACAACTTCGGTGACTTCAAAACTGTTGGCAA
CTCGATCATATGTAACAATCACATGAGCCTTATAATTGGTTCTTGTTTTAGCTCTAATAC
GCTTTGGGTCATGATCTGTTTGATTTTTTTTCTCCGATGGTCTTCATTGGAACAAACAAA
CCAGCGTGTGAAGTAATCACACCATCACATCTGCTTTTGATTGTGGATCTTTTCCTCACA
TCAAAGCCGATGGACCCCCATAATCTACCCAAAACCTCCCAAGCCTCTTCCGAATCTCTG
AACCTCATACCTACTTTGGTTGTCCTTCCAATTTCTGCCATTGCACAACATTCAATTCTG
CCAAACAAAAACAAAGTATATAAATTAGTGCACTGCAATCTCTGAACCCAAATAAACCCA
AACCATGCTAACTCTGAACCCAAACTGCACAGGTATATAAATTAGTGCAGGAAGAGGAGA
GGCGACCTGGGAACCGAATGTGGCGGTGAGGGTGGCGCTGGTTCCCGCGGTGACTCAAGG
GGCGGCTCGGCGGAGCTGGTTCCCACGGCGACTCGGGCGGCGGCTTGGCGGAGCTGGTTC
CCGCAGCGACTCGGGCGGCGGCTTGACGGAGCTGGTTCCCGCGGCGACTCGGGC
