| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_105488
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_744 |
1 |
539 bp |
MLOC_744.1 |
Available |
Available |
None |
| MLOC_742 |
2 |
2228 bp |
MLOC_742.2 |
Available |
Available |
LOC_Os08g01680.1, FRAME:+3, EVALUE:2e-92, 13108.m00094 protein WD domain, G-beta repeat domain containing protein, expressed |
| MLOC_743 |
1 |
1257 bp |
MLOC_743.1 |
Available |
Available |
LOC_Os08g01690.1, FRAME:-3, EVALUE:6e-42, 13108.m00095 protein retrotransposon protein, putative, unclassified, expressed |
CDS Structure of MLOC_744
CDS Structure of MLOC_742
CDS Structure of MLOC_743
Contig Sequence (6075 bp)
>contig_105488 6075 assembly3_WGSMorex_rbca.fasta
TAAGGCTAAGAGATGACCCATTGTAAATATTTTTTTTGTCATCTCTAAATTTAAGAGAAG
ACAAAAGATGATCTCTTAACACAATATGTCTCACCACGTTTTTAGGAATAACTAGTTATT
GAAGATAAGGCTAAGAGATGACCCATTGTAGATTTTTTTTTGTCATCTCTAAATTACATG
CACCTTTCAAAGCTCTTTGATTCCCCAGTTATCTTAGAATGTTGTAAATAGCATCTTATG
TCTTGAGCGTATAACTTATTCCAGTATAGTTTTGTAGTTCTTTAGGATATTAATTTGTTT
GCCCTGCAGGCCTGCGATACAACTCCCTGGTGCAAGTAAAGCTATAGTAGCAGTTCGTTT
TTGTCCTATTGTTTTCACCCTACGTGGTTCTCAATCAGGTAGCTCCATTGGCTTTGCAAC
CTTGCTGGAGGTTCTCATGGTGTTACTGATCTGTTACAGTGAAATTGAACCATTTCTGTA
CTGTTGCAGAAGGTTTATTCAAGCTTCCTTACCGAGCTGTTTTTGCCGTTGCTACTTTCA
ACTCTCTGTATGTCTATGACACTGAAAGTGCTGCCCCAATTCTAATACACGCTGGTCTAC
ATTATGCCGCCATTACAGATATTGCATGGTGAGTACAACAACATTTTTTTTTGTGCTTCT
AGAGTCTTCTCCATTGGCCACAGAGGAACTCATTCTATTTGGCATTCCTACAGGAACTAG
AAATTCATCTTTTCCTTGTTCTGCCAGGTCTCCTGATGCGAAGTACTTGGCATTGTCATC
GCGAGATGGTTACTGCACTATTATTGAGTTTGAGAATGAGGAACTAGGGCAGCCGCATGC
CCTCTCAGGTATTTTCTGTATATTCCCTTTTCTGTCTTTTCTCTTTTTGGGAGGGTGTGT
GTGTGTGTTGCAGACGGTTTCTTATCATGACACCAATGCCTAATTGGTGCATCTTACCTT
GTGATGCAACTCCCTTTGATTCATGGTTTAAGAAAAATGTGCATAATTTGTGCTGCTAGA
TGCTAGTAAGATGGACATCATGGCTTGCATTTACTTGAAAATACTCTTCCAACAGTACAA
TTTTCTGAAAATCTCACAGGGAAAAAGGAAGTTACAAAGGGAAATGTCACATGCAGAAAT
ACTAAGCCAGCAACAGTAGATAGCATGGAAGTTGATGCCGGTACCGCCAAAATTAAGAAG
TCAGGCTGCCCCGAGGGTACAGTGACACCTCCACCAGTGTTGGCCAAAAACAGCACACTG
AGTAAGCCTACATCGAACAATTTACTTGCGTCGCAATCAACTATCTTGCTGAAGTGGTTA
AGATTATGACATTGTGTAGTACTGAACAATCACTTTTACGTTATACTGTAAGAAATTTAG
TTTGTGCCGTGTTCTTCAGCTCTAGTCCCAAAATTCCCCTTCTGATCATGTCACACATTT
AGCAACCACATGAAAGACTGGTTTTGTTTCTGAACACATTTGGTTATGAATAACATGCAA
CTGCGCTCTTATGACATTGGTCATGTGTAATTTTGGTAAATGAATCCCTACCGCATGTAA
TTCTGGCCATATACAATGCCAACAATAACAATCACATTTTATTAGACCAAATAGTCTTCC
AGTGTTTATTGTTTCAGTTAAGTGTCGGTATATACAACAACAACAAAAGACAACAACAAA
GCCTTTAGTCCCAANNNNNNNGGGGTAGGCTAGAGCTGAAACCCATAAGATCTCGCAACC
AACTCATGGGGTTGGCACATGGATAGCTAACTTCCACAGACCCCTGTCCATGGCTAGTTC
TTTGGTGATACTCCAGTCCTTCAGATCTCTCTTTACGGACTCATCCCATGTCAAGTTCGG
TCTACCCCGACCTCTGTTGACATTATCAACACACTTTAGCCGTCCGCTATGTAGTAGCGC
TTCTGGAGGCCTGTGCTGAATATGCCCAAACNNNNNCAGACGATGTTGGACAAGCTTCTC
TCCAATTGGTGCTACCCCAAGTGTCAGTAGATACGCTCATATGAAAATTGTATATGCATT
AAGGACCAAGTGGAGTAACTGTGCTTATAATAGTCTAATAGAGTTTGAGTCTGAATCTGC
ATCCTGCATACATTGGCTATCTTTGTTCCTTCTTGCATGCACTTTCCCTATGGACCGTCC
TTACATGGTTATTCTTCAATACTCTTCAGGAATGAAGGAAGAGGAAAATGTGGCCTGCGA
ACATGCAAAGCCAAAGCCAGACAGTATGGACGTTGATGTTGATGCCACTAAAGCTAAGAC
AGAAGCCAATCCTATGTCTGTAGAAGTGACACCGCCACCAGTGTCAGCCCAGAAGAGTGT
ATCCAGTAAGCCTACTAAGAAGCGAATTACCCCTATTGCAATTAACTAAGTAGCAGAAGT
AGTTAGAATCATGATATCTGTTGTATTGACAACAAGTACTGGAAACTACAATTAGGTTAC
TCTGTAAAGAAATGTAGCCTGCTGCTGTTTTCGCCTTCTGCTGTAGTCCCAGAAATCCAC
TTTCTGCTCATGGCACGTATGGATCAATTTTATGTGCAGAAAGATCATGTCTATTTGCAA
GCACATTTTGTTGAGAAGTAATATTTGTTGAGGGTCTTTTCACTGTTTGTTGTGTGATAT
TTTTAAGGAAATCCATTCATATAGACATAAATTGCTCATATGTAACCGCTGACAGCAATA
CTCTGCATATTCATTCAACCAAATTGGGTCTCTGATGCCCTTATTTCAATCACACGAAAG
AAGATACAGTCTTTATCAAAATAATAAATGCATGAAATCAGTGTGGGTATGGATTGGATC
ATTGCCTTGACCTGCTGAAGTGTTTTCGGTGCAGGCCATCTTGGCGCATTGTGCTGTTGT
CTTAGAACTTGGTAATGCGTGCCTTTGATTTTGCAGATGATTCTTCTTTGTTGTCTGCCT
CTTCAAACCTGATATCTTCATCTTCTGAAAGGACCTCGATTTTCTCGCCGTGGGGCCCTG
ACTCAATCTTCTCATCGACATGGATGTGTCCGGTGACGTTGATGACCTCTGAATCTTGCT
TTGCTTTGCTCTTCTGTTTCTTGTTCCACATCCAGGCGTTGTGGGCGGTGCCTGACTCTT
TGCCGACGGCCTCTGATTCCTTCACCACCTCTTGGAACTTGACGTCCTCGTCAACTGTCA
GCCTGACGGCCTTGGAGCCCCCAGGGCCTGACATGGCTGACTTGTGGACATGGACATGGT
CGCTGAAGTTCAATACCTCGGCCTTCCTTTCTGTCTTCCTCTTCTTTTTCTTGTGCAAGC
AGAAGGCAGCTAGGCATGCAAGCAGGAGGAGCCCGCCTAAGGAGACAAACACCACGATGA
TGACCATGTGGTGTGGAGGGCTAGGAGGAGGTGTTGGTGGGTTGATATGTGGCGGAGGTG
GGGCTAGTGGGCGTGGCGGTGGGCGAATGGGTGGTGATGGTGGGGGTGGAGTACGATGAG
GTGGCGGTAGTGAGGGTGGAGGTGGAGCACGACGCGGTGGTGGTGGTGGTGGCGCACGCT
GTGGCGGAGGTGGAGCACGGCGGGGAGGAGGAGGCTGGGTTGGTGGCGGAGGAGCCCGAC
GTGGAGGCGGCGGGGGTCGAATGGGTGGCGCAGGCTGCCGTGGTGGTGGCGGGGCTTGAG
GGCGTGGTGGGGGCTGAACGGGCGGCGCAGGCTGTCGTGGCGGTGGTGGCGCTTGAGGGC
GTGGCGGAGGCCTTGGACCGAAAGGGCTTGGTGGCCTTGGACCAAAAGGGTTTGGAGGAG
CGTAGGTGTTGGGTGGAGGGAAGAAGGGGAAGGGGAAACCGAGGCCTGGAGGGTTGGGGT
TGAAAGCCATTGCCGGATGAGCTAGTTGTATGATGCTCTGCTGGTGTAGGTGCAGTGAGA
GGAGATGGTGCAGTGAGTTGTGGTGGTGAGCATGAGCATGCATGTGGTTATATATGTGTG
TGTTGTGTGGGAGGGAAAGAGACGAGGAGTGTGATGTGGTTCGAAGATTTGAGTGACTTG
GCTGCAATGCTACGGCTTGAGCTGGGGTACGTTGCTTCTAAACAATCCGTTCCTTGGCAT
CAAAGCCCATGTAGCTGGCCGGCGGCCCTTGCTATCTCTCTCTTTTGCTACTTTGGTCCT
AACTCGTAGATCCTAATGAAATCCTACCTACATTGCTGCACTACGCGCCGATATGTGTAT
CAATCACTCATGGCTTTATTCCGAATTAGCGTAGCATATAGATCACAATCATCTTGTGTC
CATAACAAAAAAGAAAGAAAGAAAGGATGTATTGCTTGACTGAAGCTCTTGTGATTATTT
CGGCCAAGTGGCCACTCCATGGAGCATACGATTTCCGTCCAGGTCCAGACGTTGCGCGCT
GATGACATCGCATCAGCCTAACACCATCTCCTGCTACTGGCAAGATATGGCTTGTAAGCA
TGCAAAAACCGCACATCAGATACTTGAGTGTGTTGCAAGGCCATCTTCCGAAAGACCACG
AGTGGCACTATGCCTTGCAGCTCCAGGATTTCATGCACGATTCCTCACCTATCTATATCA
GTTACAAAGCGACGCTGGCCGCGTGTATGTTCACATGTCGAGGCCAAAGAGATGTCTTCC
CCGGCGGGTCTAAAAACGATCTGTTGCAAAACGTGTGATTTCGGAAAGGAAGTGATCAGC
TAGCACCCTTGCTATACCCCCAAGGAGCTGCTATTTCTGGCAGATGATGTGGAGTTCCAG
AATGCCGAGCTAAAACTGTGACGCTCATGTTTGGATGAAGATTGTTTAACTGACACGACG
GTTGTTTCTGAAGTCATTTAGCTGAAGTGTACTTGAGAAATGGTATCTCAAGGCAGGGCA
CGCACTCAGATTTTTTTTCTGACATTTTTGTCCCGCATCTCTACCTTACATATCAGAAAC
CTCAAAAAAATAAATAAATCCTCGGTTACAGTTGCTGAACTATACCGTGATGAGCTCGCT
TTTTTATTTTTGATCTCTTGCACAAAAATATTGCAGAGGCATAGAAAAAAAAATGATATC
AGTCCAGGCTTATGAAAAGTCTAGATTGAGAATGGGATGATGTCATTCTTAAAAATAGTC
CGGCTCACGTTATATTTTTATGGGAAAATATTCCCTTCAGCCGGCCGATTTATATCGCAT
CATCCATCCACATTGCACACCACGTGTTTCATGTGGGGGCCTATCACCGATAACTCTTTT
TTTTCTCTCCCTAATCTATCTATCCTCTATCCTCCCTAATAATAAACCACGCACTGCTTC
TGTCGTCCGCCGCGTCCGTCGTGGTAATTTTACGAAAAAGCCCCTGATATTTTGTGTATT
CAACCGGCACTCCTGATTTGAGTGGAAAAACGATTCAGTTTTACAGCCCCCCTCCCCATC
GACACCCATCCGTTGCACCGTCGCTTGCCGTTGGCGTGGACAGGAGCAATGAATGGGCGC
AGGAGCTAAGGAAGTGGTGAGGCCGCGCGGACGAGGCGGCTGCTCTGGTGTGGATCCGAT
GAGGGGGCGGACCGATCGAGGCGGAGGAGCACACTCCGGTTGGTGGTCCGGGCGGTGGAT
CCGAATCCCCTGTTGAGTAGGCTCTGCATCATCGCGGTTGTGTTCGCCTGCAAGACCTAT
GATCTCCGCCGGATTTCACAGGTGATTCCCCTCCCTTGGTGACAGCGGTCATTCTCTCCT
CACCCTTCTCTTTTTTTTCAAAGTTGAACTTGGCTTCACCAATCTGTAAGCTGGAGGAAG
CTCACTGACTGTTCTTCTCTTATTTTATGAAATGTCAGGCAATTTATTCCTCACATATGA
AATGCCGGCGACGGGCGAGGAGGCGATGGGACGGTGTCTGCCCGGTGACGGCGCTTGGAG
GGGACGGGCCGGAGACGGACTGGCGACAACGCGCTGATGCGGAGAGGCCCGGGCGTGACG
GGCATGCCGATGTGGCGACGGGGATGGGGATGGCCGGGGGGCGGCGCGGGAGGCTAGCGG
GCAGGGGCGACGCGACGACGGGATGGCCGTGCCGGAGCACGGCGAGGCCGGGGACGCAAC
AAGGGAAAGGGGAGG
