Contig Data
morexGenes
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Map Locations of contig_104637 (4024 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_104637

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_628 1 708 bp MLOC_628.1 Available Available LOC_Os05g20310.1, FRAME:-2, EVALUE:7e-15, 13105.m02148 protein retrotransposon protein, putative, Ty3-gypsy subclass
MLOC_627 1 676 bp AK248169.1 Not available Available None





CDS Structure of MLOC_628






CDS Structure of MLOC_627






Contig Sequence (4024 bp)

>contig_104637 4024 assembly3_WGSMorex_rbca.fasta
CTACGCTTTTATATCTTTTTGCACATGGAGGTAATACCCTACGTCCTGCTTAATTGTATT
GATGAAGATGATTACAGAGTTGATCTACCCCGAGATCATATATGCTAAACCATAGATGAT
TCAGCCTCCTCTATACGGATATGGCCCCCGGTTTATATAGACATGAGGGTTCCTAGGGTT
TACAAGATACCGACTATAATCGGGGATAGATGAGCCGACCTAGTCCTTCTAAGCTTGGAG
TCCACACCAATCCTTGGTGTTTTCCTTCCTTTGTACGAAGTCGTCGATCACCCGGTCTCT
GATGGTCCGGTCCATGGGCCGACGCCCCGAGGATCCCTTAGTCCAGGACTCCCTCAACAA
CTACGATTAACCATACATGGTAATTATGGTTGGACCACACGTGGCAAGTAGTTAATCATA
CATGACAACTATTGTTTGACCATATGTGATAAATAGTTAACCACACATGATAATTATGGT
TTGATTACACACGACAACTACCGTTAATTAGACATAACAACTATAGTTTATCAAAATAGA
GAAGTTACCATGCTTTACAACTACATTTGCCATCCTGTATAAGAGCATCTCTAGTGGCTT
GTGCATCCCATAGTCTAAGCCAAATATAGACCATCATAAGTCAAAAAACGTTTCCAGCGG
TTGGTCTATCCCGTGGTCTAAATTTTAGACTTCCTCTAATCTTGCTACGCGTCATCCATA
TTTGGACCACCGAGCGACGACGTTCAAAGAAAAGCTACTCGTCGCGAGCTCACTCCCGCG
CCGACCCGGAGCAGCTGGAGACGAGGAGGACGCCTGCGCCACTGCCCCGAGCTCGCCGTC
GCTCAGGTATGCCCTGTGTTTTTCATATTCTCATAGGATGTGAGGGGAGAGAGACGGAGC
AGGGAAACAGGGGCGCTGGATCTGATGTTGCCGCCGACCGCCCTTGCCCTTGAGCTGGTG
GAGATGCGGAGGCGGGAGGGGCGACACGAAGGCCGCCGTCCGCCCTTGCCCTTGCATTGG
AGGCGGAGGCTTCGCTGGGGAGAGAGGGCGGCGGCGGCTGCGACGGGGAGAGACAGGGAG
GAGGCAGAGGTTGGGGTAGGGAGGAGGCAGCGGTGGGGGTAGGGAGGAGACGGAGGTGGG
GGCAGGAAGGAGGCCGATGCCGGGGCAGGGAGGAGACGACGGTGGGTGCACGAAGGAGGT
GGCAGTGGGTGCAGGGTGGATCTGAATATGATGGCTGCTCTGTATTTGCTCCTCTGTGTA
TCTATTCTATGCTCTGTCTTTGTATTGCTACTACTCTTTTTAGTTTTGCTGCTACCGTCG
TCTATATATACTACTGAATTGTTGTTTGTGTGCAGATGAAAAACTCAAATGAGATGGACT
CACTAAATTGTTGTTTTTGTGCAGATGGAAAACTCAAATGAGATGGACTCACAGATGAAC
AACTCCTCATTTCTGGACATGAATGTGGGATCGAGTGATATAAATTGGGTTGGAACACCA
AATTGCAGCCCAATCAGGGAACAAGTGACGATGCTAACTTTTTTTTGACAAAAGGAGCCT
CCACAAAAGGGAAAAATTGGTCAAGTGCTGAGGACATGGTGTTGATCCAAGCGTGGGCAA
ATACTAGTTTGGATGGGGTGACTGGAGCGAATTAGAATTCAAGTACATATTGGGGTAGGA
TTTCATATTACTATAACAACCACAAAAAACCGTCATGGCCGGAGCGTGTTCCTAATGGAC
TCACTTGTCGTTACAACACTATTTCCGGGCTCACGAGTAGGTTTTGTGCATGCGTTCAAC
ATATATTAAATAGAAATGGCAGCGACATGACTCTCTCCGATAAGGTATGCATCTATTTTC
TAATTCGCTTCAAATATTCCATATGTGTTGTATGAAAGTGTTAACTCTCCATTTCCTTTT
GCGGGAAAGAGATGCACACCGCTTGTTCATTGAACTTGATGAGAAAAAAAAACCATTTAC
ACTAATGCATTGTTATATAGAGTTTGAGAAGTATCCAAAGTGGCAGACACATCCGCCTCC
TCAAAAGAAATATAAGAAGACCTCAGATGCAAGTCCGGGTACAACCTCAAACATAAGAAA
TCATCTTTCCTCGCCGACTGCAAGTAATATTGCAGTATCTTCTTAATTCGGAGATCTTAG
GTACTGGTCCCCAAAGACTTCACAAATTTTGATCACAAACTTTTTCAAGCCTCTAGATTA
GTAGCTTCTGCAGACCGGATGCAGTCATCGGCACCATCAGCCGCTATTCCATAAGTTAGC
ATTGCATTGCTGCGGTCATCTTTTGCAACAGATGCAACCCAATAAGTCTACAAGCACTTC
TTGTTTGCGTAAAATAACCATCATAATCATGTTGAAGTATAGTTTCAACTATGCGATTAA
ACAAATTACGAGGCATCCTAAACCCGTCCGTACAAATGAAAATGAGATAGGAAGGTGGAA
AATATGCAAACATATAGTAATCTACTAATTACGAACCTTCACCGAAATAAGTTTTCGGGA
TAGCGAGGATTTTCACTGAAGTAGTCATTCGAGAGTAGAACAAATCCCGCATCTCTTGCT
CGATCGATCATCTGACATCCATGCTTGGAACCACCATGGTGTCGACGGTTCCCCTGCTCT
TCCTCCTGGCGCTCTGTGAATGCTACAAGAATGAGTTCATCGTCGTCGAATGAAGACAAC
GACGAATTCATGAGCATATCCAAAGAAGCAATGTTTTCACTCATCATTCTGTTGTTTGAG
AGAGGACAGAGGAATTCAGGAGAGGAATGACCAGGATTGGTGGATGAGAGATGAGAGGGG
TGGTATATATAGACCTGGAAATAGAGCCGTTGCAAATATAACCGTTGGAATTAGAGCCGT
TGAAAATAGAGTCGTTGGAAATTTAGACTACCAAATTTAGACATTCCGCTGAAAAACTGA
GGTTGTCTAAAATAAAATTTATTTACACAATTGTCTATATGAAGATATAGACAATGAAAT
TTAGACAAGCCACTAGAGATGTTCTAACTAAATTGGTCATTCTATGAATAACTAAAGTTG
CTGCGCCGAGACGTGTGGGTAAATTTTGTTCCTGTCATACGCGTGGGGTAGAAATGAATA
ATAGATATTAAATATGTGGTTAAAGTAGATGCGTCCACACATGTAAACAATTCAAATGTT
TCATCTACACATGATCGTGTAAGCTGCCTTTTGAATAAACAATTCAAATGTTTCATCTAC
ACATGATCGTGTAAGCTGCCTTTTGAATATATACCATACATAATGTGTGAGCGGATATCT
AATAGGGTAGATATAGGGTGAATATCGGGACGCAGATACAAACGAGCGTGCCAGGCTACA
CCGCACGCCCACCCGGTCACCCGGTAACCGTCGACCAGACTGCCCCCGAAACGCCGCCGC
GGAACCGCAAATCAGCACCCACCCCACGAAGCGATTTCAAATTTCGAACCCGGTAACCGG
CCCCGCACGCTCCCCTGCGCCCACGCCTTTCCAAATAAAACTCCGCTCACCCACGCTCCC
CACTCCCCACAGATCCATCCGCGCCTCGACTCCCCCCTCCCCCTCCCTCACTCCTCCCCT
CCAAAACCTCGCCGGAACCCTACCCCTTCCCCGCCGCCGCCATGAGGGAAATCCTGCACA
TCCAGGGCGGCCAGTGCGGCAACCAGATCGGGGCCAAGTTCTGGGAGGTGATATGCGACG
AGCACGGCATCGACCAGACCGGCAAGTACGCCGGCGACTCCGACCTCCAGCTCGAGCGCA
TCAACGTCTACTACAACGAGGCCAGCGGCGGCCGCTTCGTGCCCCGCGCCGTCCTCATGG
ACCTCGAGCCGGGCACCATGGACTCGCTCCGCTCCGGCCCCTACGGCCAGATCTTCCGCC
CCGATAACTTCGTCTTCGGCCAGTCCGGCGCCGGCAACAACTGGGCCAAGGGCCACTACA
CCGAGGGCGCCGAGCTCATCGACTCCGTCCTCGACGTTGTCCGCAAGGAGGCCGAGAACT
GCGA