morexGenes - Barley RNA-seq Database

Contig contig_1043867

Source Contig contig_1043867

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

morexGenes Home
BLAST Search
Keyword Search
Samples and Analysis

Links

James Hutton Institute Home
BioSS Home

Map Locations of contig_1043867 (283 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_1043867

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_600	1	123 bp	MLOC_600.1	Available	Available	LOC_Os05g05280.1, FRAME:-3, EVALUE:1e-19, 13105.m00547 protein zinc finger family protein, putative, expressed

CDS Structure of MLOC_600

Contig Sequence (283 bp)

>contig_1043867 283 assembly3_WGSMorex_rbca.fasta
GCTTGTAAGCAACTCTCACCTGGGCTGTTGTCAGGTAAAGGCCAGGATGATATGCAGTGT
CTTGGCCCATTCCTCTCAGTTCCAAGCCGACCGCTTCGAAAGCCCAGTCAGGCACACGAA
TCATGTCAACCAAAACCCGCACACACGAATCATGTCAACCAAAACCTGCACACATGAACG
TCATGTTAATAATGCCATCATATTACCTTCCTACTGCTAGAAATAACCTAGCCAGCTCTT
GTGTGGATTGAAACTTGTGTGCTAGGACAAAATATGCAATCCT