| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_103953
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_550 |
2 |
440 bp |
None |
Available |
Available |
None |
| MLOC_547 |
2 |
1355 bp |
None |
Available |
Available |
LOC_Os01g47740.4, FRAME:+2, EVALUE:4e-21, 13101.m04943 protein zinc finger, C3HC4 type domain containing protein, expressed |
| MLOC_548 |
2 |
1939 bp |
MLOC_548.2 |
Available |
Available |
LOC_Os01g47730.1, FRAME:+1, EVALUE:2e-132, 13101.m04939 protein ras-related protein, putative, expressed |
| MLOC_549 |
1 |
390 bp |
None |
Available |
Available |
None |
CDS Structure of MLOC_550
CDS Structure of MLOC_547
CDS Structure of MLOC_548
CDS Structure of MLOC_549
Contig Sequence (7960 bp)
>contig_103953 7960 assembly3_WGSMorex_rbca.fasta
AGTAGTAGTATTGGTCTAGGTATTGGTCTAGGAGTCCTTGGTCTAGGAGTCCTCTAGGAG
TCCTATTAGTGTCCTATTAGTCTATGTTTACTTTCCTTGCACCTCAAGTCTTGTGTTATA
TATATATGCCCTTGGGCCTTCAATAGAGATAAGTTGCTNNNNNAACATGGTATTAGAGCC
TTAGGTTATTTTTTTTGTTGCGCAACTCGTGCTGATCCAATTCCACGCCGCCGCCGTTTT
CTCTTGGCCGATGTTGTTATCCTGCACGACCGACCCTCTCCTCTGGTCGGCTCGCTGCTG
CCCTCCCACCCCACCACCACGTTCGTCAAGCCCGCCGCCCGATCCGTCTGCGTTGACCGC
GTGTCTGCCTGCCCTCCCAGCAGATTCCCGTGCGTGAGTCCGCCTGCCAGATCTGTTTGC
TCGCATGCCTGCCTGCCTGCCTGTGCGTGCGTTCTGGAGTTGCAGCAGCCCGCGTTTTGG
AGTGGATTGACCCACGCGGCTGCTGCCTGCACGTTCTCGTGAACAGCTTCTGTCTCCGTT
TTGGCTGGTTATTCCTTGGCTGGTTTTCGTTGGGCTTCTGGATCCGGTTGACAGCAACTG
TTCGACTGTGTCCAATGTCGTCAGGCTATGTCCGATAAAAAAAACAGGTCCAATGTCGTG
AGGCTATGTCCTTGTTCCCCATTGTCAGGTGACTTTTGATGGTACAAACTACAGTGAGTT
TGTTGGCTTCTTTCGCATTCATATGCGTGACATTCGTCTCTGGGGTGTTCTATCTGGGAG
GTTTCCTGTCCGCCGTGCCCGGTTTCTCGTGTGGCTCCTACTCCGCCTACGTCATCATCT
TTTGATGCGGATGCACCTTAGACTGCTAAGAATGCAGCTAAGCTTGCCAATGAGTCTGCA
GCTCGTGCTTATGAGCAACAGGTTTTCATCTATGAGGAGTCTCTTCACTTTTACCGTGAT
GCTCTCTCTGCTTACACTCAGTGGTCTGATGATGATGCTTGTGCTGCGGCTGTTCTCACT
TCCAGTGTTTTGCCTCAGTTTGCCTCTGAGATCTGGTGATGCCTTATGTCTATCTGTGGT
TCGCCAGGCTCATGCTCTTCAGCAAGGTGACTCCATTATCGACGATTTCTACGCCCAGAG
TTTTGCCATTTGGCGTCAGCTTGACTCTCTTTGCACTGCTGGTTGTCGTACTTGCAAGTG
TTGCCAGGCTGTGCGGACCGACTTGGAGTTTCATCGCGTCTATGAGGTCTTGTTTCGACT
TCGTCCATAATTTGAGCCACGACGCGCTCAGTTGTTTGCTCGTGGCCGTATTACTCTTAT
GGAGGCGCTTTCTGAGATTCGAGCTGAAGAGACTCGCCTTCGTGGTGCTGGTATACTTGA
GGTTCCATCTGTTCTCGCTGCTCAGGCTCCTGCTACGTCGTTTCTGCACCGACTTTTCGC
TCTAGCCCGCCACTCCAAGGATCGCTCTCGTACTCACTATGGTTACTGCAACACGGATGG
TCACCCCAAGCCTAATTGCTACTTGAAGAAATGACATCTACGCCAGGCACGCTCAGAGAC
TTGCACTTCTACCTTGACTCCTTCAGCAGTGTCTCTGACTGAGGAGGATATTGTGTGACT
TAAGCATCTGCTTGCAGCTTCAGTTTCTTCTTCACCAGGTTCTGCCGGTCTTGCCGTTGA
CTCGTCTAGCTCAGGGAGACAACCCTCTTCATAGCCAGGAGCTTGGTTTTGGCCTTCGCC
GTAATGGTATTATGTTTTTCTCTTCCGCTGCCATCATCTCTAGCCTAGTGTGTGTTTCCT
AGTTTTCTTTGTTTTCCGTTGCGTCTACCAAATCCGTTAATATTGTGTGTTTCTCATGCC
ATGCGAGTCCACCATACCTTTGTCCGTCAGCCTTTCCCCCGTCTTGATCTTTTCTATACA
ACTTTCGCGGCCTACTTGTTGTTTTCTATAGGATTTTCTGTACTCCTTCCGCATTGTCAA
TCTACGTCCATCGTGCCTTAACCACCGAGCTTCTTTCACCGTCGGTTGTCGTGGACTATG
ATTTTCTACGCAATGCTTTACTCTCTTGATGTGCCATCTTCTTTTGACAATCCATCTTTT
CTTGACACTTGTGTTGTATCTTCAAGTGATGCGGTGTCTTCCTCTGATGTGCCATTTCTT
TGTTATCCCCTTTGGCTTAACTTGACGGGTTTTGAAGACTCTTCATGATACGATGACACT
CTCAAGACGTGGATTTGGATTATCATTTTTTTTAGTATTATGCTTCTTCAAATGCAATGC
TATTGAATGCAATGCTATTGCATACGCTTTGCATTTGTGGGGGGTTGTTAGGAAGTATTA
GTATTGGTCTAGGAGTCCTATTAGTCTATGTTTACTTTCCTTGCACCTCAAATCTTGTGT
TATATATATATGCCCCCTGGGCCTTCAATAGAGATAAGTTGCTTTCCTAACACGATGCAT
GGTGATGATCATGTAGAACGAAGTTACTAAAGAATAGCAGTGCTTGGTATATGGCCACCC
ATGCTTCTTTATAAATATCGATTGGATTTAGAAAGGCGATATCATGGGGGTCGGTCACCC
ATGTGCTAGGCTCATGGTTCCAATCAAGTGATATAAACCCTTTTATCTTAAGTTAGAATT
GTATCATTTAAATATAAATTAGGAATTTATCAATTAGATATAAGATAGGAGAGCCTTCTT
TTAGAAACATGGAGCCACTGATACTGCCCAACTTGAATCTGGATACTGTCCAACTTGAAT
CAACTGCCTGAAGATATGTGTGAACATGTATACTTTGCAGGATGGTTCATGACAGGAGAA
TCTGGTTTCACACTCACCGCATCCGATCTATTCCAACTTGTAGTTCTAAAGAAGTGTGCT
CTATGTATGTTGCAGGAGGAGTACCATCCTGAGGACTGCATTGGAGTCCTGGATTGTGGT
CACAGATACCACGCGGAGTGCGTAAAACAGTGGCTGACGGTAAAGAACCTATGCCCCGTC
TGCAAGACGACAGCTTTGTCTGCGGGTAGAAGAAGTGGATAACAAACAGGATTAATCTTT
ATCAGTTATTTGCTTCCGACAAACATTGAGCTCAATTTTGTACATAAGAAGCGGTAGACT
ATTCTGCTACCTGTATTTGTTGTTCACCTGTGAGTGAGGGGAGTAACTCAGCTTCCAAAA
ACTGTACAGACATAACGTTGATCGTTCTATTCAAATGTAGAATGTTTATAAATTATTACT
CAGTTGTCCATACATACAGTGTATCATATGGTGGATCGGAAAGTAACTCTTAGAGTGTCA
TCTCTAGAAACTACACTGTATATATGTTGGTTACTTTAAAACAAACAGAAATGTGTGTTC
CCTGTGTACATTACTAAATCTTACTGTATTTAAGAGAGCTGATAAGAGAGCCGAGTAAAG
AGTTTTTCAGCAGTTGAATGCTTGCTATTAGTGCTTTGGGTATTTATGTTTTTGTAAGAC
AATGTTGTGTACTTAATGATAGATGAGTTTGTTCTTGGTCGAAACACGAGAGACAAACTT
GGGATGAAAAACAGAAGCCCGGGATTTAGATTCGCTGCTATTTGTAATCTGTAATAGTAT
TAGTCTTAATTTTAGTGCATTATACATGTGTATATTCTGCCACTGTTTCATTTTTTACAG
AGACATGTTTTTTTTTCTCAGTGGTTTTACCGTGCAAGTAAAAGATAGTTTTGCCCTAGA
ACTCTTGGCCTAATGTTTATTATTTAGCTAGCTAATAATGCGTCGTACTTGATGGAGAGA
ATCTTGCTGGGAAGGATCCCAGCTAGCAAGTCGCGGCAACTGCCAAACGAGCACACGAAA
ATGAAAGGAGAAGCAAATGGAATGCTACCACACTAAGCCAGGTCAAGGCTGGCACATGCT
TATATTCGCAAATTCAATTTTCCACGTATCGTTTTGCGAGATGAGGGAGTCGTTGACACA
TGTATGTACAGAGATGCATGCCCGGTCGGTCACGGAGACGAAGCCAGGACCGGGACAACG
GGTCGATCGATGGTCGTCGTCATCTCTCGCTTGGCCTTCTCCACCTCCCACGAAACCAAC
ACCATCCGCCGCGACCTCTTCTTCCCTTCCCACCCCAGCCCCCCTGAGATACTTTTCCCC
AAAGCGAAACCAACTGGAAAGAAGAGAGACGCGCCGCGCCTCATCGCATCGCACCGCACC
GCACCGCGTTGCCTTTGTATCTATCGCGGCTCTATTTAGCTCAAGAAGAGGAGAGGGGAG
GCGCGCGGGAAGGGGGGCGAGATCAAATCAAGATCAAATCGTAGGAAACCGTCGGTCGAT
CGAGCAGCGGCGACGCAGAAGCAGGAGGGGGGATGGCGGTGGCGTATCGCGCGGAGGAGG
AGTACGACTACCTGTTCAAGGTGGTGCTGATCGGGGACAGCGGCGTGGGCAAGTCCAACC
TGCTGTCGCGCTTCGCCAGGGACGAGTTCAGCCTCGACACCAGGTCCACCATCGGCGTCG
AGTTCGCCACCAAGACCGTCCGCGTCGACGGCAAGCTCGTCAAGGCGCAGATCTGGGACA
CCGCCGGCCAAGAAAGGTACCACATGCCCGCCTCTCGCTCTTTCTTCTTTTGTTATGCCC
GCCACCTGTATGCGGTATTGCTCCGCCTGTCCACCTCTTGCTCTTTCTTTCTTCCGCCGC
TCGCCTCGTCGTCGATTCAGTTTAGTTTACCTTGATCGATCGTACAGCAGTAATCGACTA
ACTCAAGGACTTGCGACGGCTTGTTTCCCCTCGCCATGCTTGTGATTTCAATAGCATGAA
CTCATTCTGAACTGTACATGTCATTCGCAAGTATCTTTAGCTATGCAATGTGCCTCTTTT
TGGTTGCTTGTAACAGCATTTCCACATTTAACACCAGTACCAAGTTGATTGATCACTTTA
CGTACGTGCGTCGCGCTTGCACCTGCATGCGGCTCTCTCTCTCTCTCTCTATCTAGGTAC
CGGGCCATCACCAGCGCCTACTACCGGGGCGCCGTGGGCGCGCTCGTGGTGTACGACGTG
ACGCGCCACATCACGTTCGAGAACGCGGAGCGGTGGCTGACGGAGCTGCGCGACCACACG
GACGCCAACATCGTGGTGATGCTGGTCGGGAACAAGGCGGACCTGCGCCACCTCAGGGCC
GTCTCGCCGGAGGAGGCCAGGGCCTTCGCGGAGCGCCACCGCACCTTCTCCATGGAGACG
TCCGCGCTGGAGGCCACCAACGTGGAGGACGCCTTCACCGAGGTGCTGGGCGAGATCTAC
CGCGTCGTCAGCAAGAAGGCGCTCGACATCGGCGACGACCCCGCCGCGCCGCCCAGGGGC
AAGACCATCGACGTCGGCGCCAAGGACGACGTCACCCCGGTGAACTCGGGCGGCTGCTGC
TCGGCTTAGTCAAAACTCGGTTGGTGTGGTGATGCCGTGTGTGCGTGCTAGGACATGAAG
GGCATGTCGCAGACCGTGATGATTATTTTGGTCAAAACGCTCTGGGGGTGGTTGACACGA
CATGCTTGATTGATATGATGATACTCCATACAGCGTGTTATACTGGGAGAAGACGTCGTG
CTGTGCTGTTGCAAAGTTGCAGCCGCGGTCCGCATCTGTGTTCCATTTCATTCGTTGGTC
TGTTTGGTGCGGTTGAGGTCCAAAAAAAACGCGTCAGGCTGTGACAATTTTAGGTCAAGA
CGATTCAGTCTGGTAAAAAAAAGAACCACGATTATGCGTTGATGCTAACCCTACCAGCAC
ACGACGACGGGTGAGAGAAGGGTATTGCAAAATGCAGTAGCATCTTTTCCAGCGAACAAA
ATGCAACGTCAACCAACGTCGCCTGCTAAAACTGTTACGGGAGCACCTCTTCGCGAAATG
TGTTATGAGTGAAACAGCTTCTTCTATTCCTTGTTGGCCTTCAGTTGGTGCAAGTACCAT
TAGTGAAATTAAAAAAAAAGAAACAATAACTATACTAGTACAATATATCAAACCGTTGGA
TTTTCTCTTGCTTAAACCTTTTTCCTCTGTCTCTCTGAAAGGCATTCTATTCTATTCTCT
CTTCTACAACTCTACTACTTGAATGCCCATGCATTGCCACGGGACGATAAACTTAAACAT
ATCAAAAATTTAATATAATTCAAAACATGTATGTCATGGTTGTGTTGGGACAAATGGTGT
CTTATACTTACAAATTTGACATAAAATGTTAGATGGTGCAATGGACTGTATAGGGTTTCG
ATTAAAAAGTGTGGACTGATGAAAAATTAGGTTCACCAATGAAATCTAGCATCACAGTAT
CGATTTTGATGAAGTTAGTAAGATTTACGAGAGAATGACAGGGTCAAGTAGTCATACTCA
CTCAACTGTAGGACAAAAACAAAACTGTCATCTCTATTCCCACCCCAAAACAACACCTAA
CTCCAGCTACCACCACACCGCGACCATGTCGTCATCATGTCTTCAGTGTCTCGAACCGCC
TCATCGTCACCCCCTAGACACCCATTTGCACATGACACCCCTTCCATCACGAGCACCTCG
GCACAACCCCTTCCGTCATGAGCAACTCGTCAATTCGTCACCCCAATCGCTGCTAGGATC
ATCCTTGCATCTCTTCGGCACTCCTAGCCATGCTCTGCCCCGCACCACCATGTAGATGCA
TATCTCTGCACGTTTCATGTCGCCCTTCTGTCAAGAGCATCTAGTTCAGCCATCGCCCCG
ACTACCGCCAAGACCATCCTTTCATCATGAGCACCTCGCCAAGTCGTTGCTCCGAACGAC
CGCCGCCGGAGCACCCTTTCTCACCATTGTCTCGAGTGGCCCTATGTGTTTTAATATAGA
ACAACAATAAATAGTACTCCATCCGTCCGGAAAAATTGTCCATGCCTTAGTTCTTTTTTA
GTTTTGCAAAAAAGAAACCTTCTAGCTTTCAAACTATTGCTAATCAACCCCCTCCCCCCT
CCATCTTCCTCCGTCGTCCATCCGCACCGTGGTCGCCCTAGATGCCGTCGGGCCCAACGC
CCGACGACGGCCAACCTGCGCCGGCCACACAGAGGTTGCTCAAGCTCCTATTGCTCAGGC
TCCATCGGCAAGATCTGGAGCCCCGCCAACGAGGCCCTGGCCCTCATCCGGCCCTTGTCG
GTGAGTCCGTCGCCGCGCTCTCCCTCCGCGCTGCTGACCTGCCCGCGGAACTCGCCGCCA
CCGGCCATGAGATCTGTGAGGAGGATGAGGACGTGGGTTACGTGATGGCCGTGTACAAGG
GCAGGAGCGGCGCGACCGCGCCCCGGAGGAGGGAGGAATTCGAGGGCTCAAGGAAGGAGG
ACGGCAACGGTGATGCCAGCCCGCCCATCCCCAACCCGAGAAGCAAGGACTACACCGGCG
AGCTGGGGGAGCAGCGTCGTCTCCAACGCCAGCGCCGCCAGCGGCATCGAGGAGCCCGAC
CCGTCCTCAGGTTGGTTGATCGTCTGCAAGGTCCTGCTGGTGTGCTGATGTAGGTAAGAA
GAAGGTCCCGTGGCATCGAACAATGTTCTACTCCTGCTGGTGTTGATCCTCTACAAGGTC
CTCCTCCTCCTGTTGTTGATCCTGTGCAAGTTGATGCTCCACCGCCCGGATCTCCCATGC
TGTGCTGATGTAGGTAAGAAGAAGCATCCATCTGTAAATCTACACCTCTGCCTGCCTGCT
ACTCTGTTAACGAGATGTAATGCATTTCTGTGTAATTCTGCACCTTTGTCTTGTAACATC
CCAAAATTATAAATTTTAGAATGTTATAACAAATAAATAATTAGGATTTTTTGTTTGAAT
GATATGTGATTGATTGTTTGAAATTGAGTGGAATTTGAAACTTGAAAAAAAAATTAATGA
GAGGGAATAAAATGACTTCCCCAAAATTTTCTATTTTGAATCCCTTTTCAGTTTTGAGTT
TGAATATTTTCAAAACCCTCTGATAAAAAAAATCAAATGA
