| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_103671
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_517 |
4 |
3861 bp |
MLOC_517.2 |
Available |
Available |
LOC_Os06g11630.1, FRAME:-3, EVALUE:4e-86, 13106.m01262 protein OsFBX192 - F-box domain containing protein, expressed |
CDS Structure of MLOC_517
Contig Sequence (7455 bp)
>contig_103671 7455 assembly3_WGSMorex_rbca.fasta
CAATGAGATCATCGGGCACTCCGTACACAAGCATCCGGATGGCTATAGTGCATTTCTGGT
AAGATGAGAAGCCAATCTTTCCAAGGGCGTTCTCTTTGCACTCGAAATAGTTATTGTATC
CAACCACCCCCTCTCTAATACGGTTGAAACATGCCTAGCAATACGGAAACGCTGTCGGAA
TTTCTGATGTTTGAACAACGGATTGGTTGTGTCAAAATAGTCCTTCCAAAGAAGGAAATT
ACCGCTCTCTTGGTTACTATTCAATGTCGGAAGGTGTCCCGGGATTGAGCCACAGAACAA
CAACCGCTCGCTATTAAGGTGGTGATGGACCAACACGGCAGCTAAGATCTCCTCATCATC
ATGAGACGAGGAATCGCCAGAGTCACAAAGGAAATTGTGGAAAAATAACTCGTCGGCTAG
TCCATTTTGTACCTTGGCAAACTGTCGAACAACTTGCGGGTGTCGTCGAAGGAGTTGGCC
GGCGAAGAGACGTGTGCCTTCCTTGGACCAGGTGGTTGGCCTCGAGAAGTCCCGACGACG
ACGATGGTGGTGGCGGCGAGGGGACGTTGGGGGGAGGTGTGTCGGCACAGGCAAATGGGC
GGCGGCGTCGACGCGACAGAGGTGGGCGAGGGTTTAATATCGATATGGGTGGGAGAGGAG
GATCAATGTGCCACTGACTAGCGTGCGAGAAGAAGCCGTAGGCGGACCCCGTGCGCGTCC
GTCTCCTGTCGGCGCCGACGCAAATCAGACTCGAAAATGGGTCCAAAATGAATCGGCAGG
CGGACGAAAAATGGACGTGCGTCCGTTTGAGTTGGCGCATTGGGCCGACATTTCTGTCCG
CCGCGACCCAAACGGACGCGCGTGGACGAAATGGGTTAGCGCGTTGGAGTTGCTCTAGAG
TATACCCCATGAAATATTTTGAAACCTATGAAGCAGGGCTACAGTAACAACTAACAAGAG
CACCGAAAGGCGTGCCGTGCCTGGTGCTCAGAGCTGGCATCCTTCTGGCAGCACCCCAAT
GGCAATGGCCTGCTCCCATCCCATTGGGAACGTCCATCAGAACCCGGCGTGCGTGCGCGC
GCATGCATCGCCAAAGCCGCACAGTGCCGCAGAGCGTGGTGCGTTGCATGGCGAGGTCAG
CTCCGTTCAGGTGGCCTGCGTACCTTGCCTTGCAAGAGACAAGTGGCTTGCCAAGTACGC
GACGGGGGACTCCCCAGCGCAGTCCATCTGACTGACAACAGGACACCTCCTCCCACCCTC
CGTCACAAGATCTCTGGACAAAATCTAGGATCTGCCACCACCGCCCGCCCAGCCAGCCAG
CGAGCGTGCGCGAGGCCTCCGCCTCTGGCCCTCCTCTGCCTTGCAAAAAGCCGACTGGCC
TTGCACTGTTGGCTCTGGGCGTTGCCATGACATGCACCCACATGAGAGGAGCCCAGAGCA
GCAGCGCCACCGCTTCTGCCACCACTACCACCAGCAGCAGCAGCAGCATGCCACATCTTT
TCCACGCATCGTCGATGGGATTGCACCCGGCAGAGAGAAGCCAGCCCATTCAAGATGAAG
CAAGCAAAGCAAAAAAATTACTACTGCACGCACAAGTATTCTCAACAGTTCATCATATTT
TGATTCGTTGCTCTATTGTTTTAGGCACCCCAGGTTTTTTACATTCCAGACAAAGCTCAC
ACAACATCCAGGCCAATATCTGCAAGCAGCTAGAGATAGCAACACAATTTGACACAATTA
CAAGCACATGGACACGGAAGAAGATGCTCCAAAGTTGGAACATGCTATAAAGATAGCAGC
AGGAGCAAGCAAGCAAGCAAGCAAGCAAGCAGAGGCACTCCACTTCTCTCGGTAACTTAT
TTGATGCAGGCAGACGGCTTGATTCATGGGGACTCTGGCCAGTCGAAGCCGGCAAAGCCT
TCGCCTTCGCCGAACCCGCCGCCATAGAACCTGACCTCGAGCCCCTCGAGGGCGTGGTCG
TCGTGCCACAGGGCCTCGGCGGCGAAGTAGTCGTCGTCGTCCTCGTCGTCCATGAACTCC
TCCCATGAGTAGATGGAGTCATCGTCGTCGTCCGAGTCGTCGGAGCACTCCTCCAGGAAG
CTGTTCTCGTAGCAGTCGTCCACACGGGGGCCCAGGATCTTCAGCCCGGGGTACTTCTCC
TGCAGGAGCTTGTCGTCCACGCCCCAGCAGCCGCGCAGGTCCAGGAACTTGAGGTCGTGG
CACCGGGACGCGATCTCCACCACGGCGTTGGTCGCGATCAGCATGTACCCAATCTCCAGG
TGCCGGAGCTTCGGCATGCTGCCGGCGATGGCGCGGGCCTCGTCGTGCTGGCACACCTTG
CCGGCGACGTCTATGGGGTGCATGACCCGCCGGAGCCCGACGAGGGACTTGCAGTTCTTG
CCGAACGCCTCCAGTGCACGCGCGCCGATCTTGGTGCAGCTGCTGACGTCCAGGAATGTG
ACGTTGGACAGTCTTTGCGCAACATCTTCCACTATGCAGTCGCTGATCTCGCTCCTCGGA
AGCTCCAGGGTCTTGAGAGATCGCGCACTTACAAAAGCAAACACTGTAGGGTCAGTACGG
TTGAACAAAATATTATTGATACGGTCACTGGTAAACAAAGTATAATTGATACTATGATGT
ATATCCCTGTTCTCATAGGATCCATAATTGAAAGGTAACAGAGATATTTCAAAATGGTCA
CAACCTGCTCGATCAAATGCTATGCAGCGGGTATGAACTGAGTTTCTAACATTCATCATA
ATCAGAAAGTAGATTGAGCCAGAAAGAAGGGGAGCGCTGTGGAGTTGGGGGATGGTTGGT
GATACCATTTTGAACATGTTCTTCTGCACTGCACACATGTTCTTCTGCACTACACACATG
TGCAGGATATAACACCATGCTCGCAGCATTCATCACTATCAGAAAACACATTGAGCCCAA
GGAGTATTATTGTGCTAGCAACTTGACACCACCACCTATAACCCTGTATTTATGGATTGA
TGCACGGGAATGATACTACTCCATTTGCATCTGTGCAACTGAATTAATAGTTTACGAGAA
TTCAGCAATAATAGAGCGGACCTTATTGTGTAAAGACAAATACAGCAGCAAGGCAGGTAA
ATTTGGAATCAATTACATAAGGTAATTGTTTATATTCATTAGCACATGATTCTCTAATGA
ATAGACGTATTAGCATTCATGCCTTGCAGCATTTCTTAGAGATTTGGGCCCTCGATCGTT
CGATCATGTCATCCATCCGATCTCCGTCTTCCATTTTCTTACCGCATGCACTAAAACCCT
ACACATACACCCTGCGCCCTTTCGTCTACCGTGGACACCACTCTCTTACTTCCCGCCCCA
CCTCTCCGTCGACCTCACCCTTCTCCTCCCTAACCGCCTTAGTGATGCAACTCCTATAAT
GCAATCACAAAGCCATGATATTTCACCTGCCACTATACCTTGTGGCAACCTAAACCATAT
TTTGCACAAGAGCCTTCCTGCATTATGCAAGGATGCTGTCGAATCTGAACAAGCACTACA
GCAACATGCACATTCCCACCAGCTAATGGTTCACAACTAATAAAACTAATATACCGTTCC
CATCTAGGTTATCAAATCTTATCAGAGCAAAGCATCATCAAACATAAAAATGATTTCGAC
AGAAGGACACTACTTACTGGTTTGCGATGAAGGTGAACAACGAGTCGCTTGGAAGCCCGG
ACACGCTAATGCGGCGGAACGAGCCATCGCTGCGAGTGACGAGCGTATGAACCATGCGGG
CGAGCTGGTCAGGCTTGTTCTGCTGCTGGCTCCACTCCTGGATGTCGATCTCCTGCCAGC
AGTAGGGACCTGAGACCACCCGGCTCCAGGATTTGCAAACCCGGGGAACCACGGTGAGCA
TCTCCTGAAGGGAGAGGTTGCGGAAGATGAGCCCCAGGGCATCTGGCAATAGGTCCTCCC
AACATCTCTGCTCACCGTGCTCTTCCATCCCTGATCCTTCCAGGACTGATCATGCAAGTT
GTATGATCCACCTGTTTCAGGAACAATCATACATGAATCTCCGATAAAATCTCCTTAGTT
CACATAGTTGAAGGCTTGAAGCAGCACATTCAGAATTTCGAGGTGACTCACATTAACAGT
ACGAATGTGCTTTCCTATGGTATGAAAAAAAAAATCCAGATAACCAACATTTATTTCGAG
ATAATAAATTGCCAATATGGCAAGACCACCATAAAGGAGCAGCTACCAAGGTACAGGAAA
AATAAAACCCAGCGATGACGATAAAATTCCCAGAGGGAAAAAAACACACCAGGACGAACA
CAACTGCAAAGCTTCCCCTGAGCTGCGAAGAGAGAGGTCGCACGCTGCAACTTCAACAGA
ACTACAGGAAGAAATGAGGTCGAACCGAGGGGAGATGGCCGGGAGAAGGGGAGGAAAGAT
GAGCTTTCTTTTACCAGTCCAAGAAGCAGGCCAGATATGGCAGAGCGCCTAGAGCAGCGC
ACGCGGGCGCTAAAAATAGCACCCCCTCTTGGCGCAAAGCGGGCCGGTCACTGGTAGCGA
GGACCCAAATCAGGAAACCTATCCATCCAAGAACCAAACGCTGCTGCTAGAGCAGCAGCA
AGATGCGAGCACCAACCAAAAGCCAGCCCAGCCAAGGAATTAAGCTTTGTTAAGCATCGC
CTCACTCGCACTCACACCAACCAGCGAGTGCCAGGAGCGAGGAGAGGACGCCGCGCGCAG
ATCTAAAGCAGCGCCCTTCGCCAGGGAACGAGGAATTCGAGAAAGCGTGGCGCGCGGCAA
CTGGCGGCGCCAACCTATATACTACGCCGGCCTACGCTGGTGGCCTCTGGACGCGCGCTC
GCGAGAAAGAGCGCAAAAGCTCGGCCGGCCTTTCCCGTCCATGATTTCTTTTGTTCTTTC
GCGAAAGGAGAAGGGAGGCGAATAAGAATAAGATGGAGAGAGACCCGTCTTTTTCTTTCG
CCCCTCCCCGCCTTGGCGAGGATTCGCTCGCGGGATGGCCGGGAGGGGGAATGAACAACG
TTGACGCCGTGGGGAGGGGGGTGACGGGCCGGCTCGTGGCGGCGGCGGGGTGGCTGGACG
GGAGGGAGGAGGCTTACCGGGCCGCGGCGGAGGTGGTGGCGGTGGCGGTGGCGACGCTCC
TTGGATCTGTGGAGGGCGTCTCGGTAGGGAAGGAGGAGGGGTGTGGGGTGGGGAGGGAGA
CAGAGTTGAGTGTAACAGTGGAGGGGTGAGGTGGTCGGCGAGAGGACCGGAAAGTCTTTC
TCCTTTTGTTGCGCGCGCGTGCCTTTTGCGGTGCAGCGGGGATGGAAAACGCGGCCGGGC
TGGAGCGGTTCTGAAGCTGAAAACGTGACGCGACCGCAGGTGTTCTAACTTAAAACGTGA
TGCGCTCAAACGAAGGGGCCATGGATCGAGCGAGCGAGTCATGATTTTGTTGACGAGATT
GCTGACGTTGACGCAGGATTTATCTGTGATGCTGCGGTGTGTGTGGGGTAGATTTTTTAT
TCCAGATTCAATGATACTCCCTCAGTTTCTAAATACTCTTAAGTCTTCATATTTTTTTAT
ATAGACTACATACGAAACAAATTGAGTGAATTTATGCTTTAAAATATGTCTATATGCATC
CGTATGTACTCCCTCTGCAAAGTAAGGGCTAGGTGCAACTGAATAGGCAATCAGCAGAAT
GTCTTATAAAGCGGACGTCTGGGTTTTGGAAAGTGTCGTTAAACCACAACTTTAGCTCGC
GGGTTCGGTTGCTCTTATATTAGTTTACAAAGAAAGTATTTCGTAGTGAAATATCAAAAA
AAAAATATTTAAAAACAAAGAAAGTACATGACAGATGTGTTCTAAATTAATGTGGGATCA
AAGTGCTATTATGTTTCTATGGCTTTTTGTGTTTGCATAAAGGCTTTCTAGATATGTTTT
TGTTCCTCCAAATTTTAACTATTACTTTCCTAAGTAGGAGTAGATATGTTTTCCTAATGT
CATGCTAGTAATATTCGTCAATACAACTGTCCACCTTGATGCGATTTTTTGATTTAAAAA
CACTCGAGACCTTTACTCGTCTTAGGGCCCAACGTTATGTCACGTTCAGTAGTTGTTCGT
CATGCGAACAATTAGAGAAATGTTCGTGTTGACAAAGAAGTGAAATTCAATGCTAACATC
AAAGGAGACAAAACAGAAAATATCTACATATCTATGCTCCTAGCAAATTATAGTAAAATA
AAGTAAATATGATTGCAAATTTCTAAACGACGTTTGACATAAAAGAATTTCAAATTTCAA
CCATCACTTCCCTAACTAGGTTTGTTTACAACCATGCCCCCCACCCTACTACCGCTCCCT
TCCCGCGGTTTTCGGGTTTGAAAATGATTGGGCACTTGTGGCCCAACAATCCAATGACCT
AGGATTTGGCCCATCATCATTCAAACAGTGTGCTTGCTTTAGCCATCGCCATCAAGCGGT
CGTGCTTTGCATTCAAAATATGGCAACATCCCATCTCCTCGCATGCAATACACCAATACG
AGGAAATAAGGTTCCTATCCAATTAGGGTCTTAGATGCGCTGTCATCTAAATCCTCGAGT
GAACAGTTGAATAAATGTTCTCTATTGAAAAAAAGGATTCACGGTTGCCATTGAAAGAGA
CAAAAACACAAGATGCTTTCATGCATATGGTTCTCGCAAATTACAGTAATGTAAAGTAAT
GTAAACGACTTTCACGATGGACCTTTTCTTCAAATTTTAACTATGGTTTCCCTAACTAGA
TTTGTTTCTGACCATGTCCCACTAGTCATATTCATCGGGAAAACTGTTACCCTTCCCATG
ATTTTCCAATTTGAAACTGCTTGAGCCCTTCGCTCGTCTTGAGACCTAACAGTTGAAAAT
ATTTTCTCGAGGCAATAATAAATTGTTTATTATCATATTTCTTTGTTCANNNNNNNNNNN
NATTATCCATGCTTGAATTGTATTGATCGAAAACACAGATACATGTGCAGATACATAGAC
AACACGGTATCCCTAGTGAGCCTTTACTAGACTAGCTTGTTGATCAAANNNGGTTAAGGT
TTCATAACCATAGACATGAGTTGCCATTTGATAATGGGATTACATCATTAGGCGAATGAA
GTGATGGATAAGACCCGACCGTAAACATAGCTTATGATCGTATCACTTAGCTTATTTCTA
ATGCTTTCTTCATGTCAAGTATCTGTTCCTAAGAGCATGAGGTCATGCAACTCCCTCACA
CGAGAGAATGCCTTGTGTGTATCTGAAAGCACAATTTCTCCCTTAGGTAGTTTTGTTAAT
TAATAATAACATATGTATCATTGAACTAATGATNNNNNNNNNNNNNNNNTCAGAAAAGTT
CAAAGATGCACTGGCTAAAGGATTGTGAGGAGAAACCCCTTGATGCAACGAAAGCAATAG
GATTGACTCAAGCTT
