morexGenes - Barley RNA-seq Database

Contig contig_103289

Source Contig contig_103289

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_103289 (1615 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_103289

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_469	1	153 bp	None	Available	Available	None
MLOC_470	1	278 bp	None	Available	Available	LOC_Os11g26850.3, FRAME:-1, EVALUE:3e-12, 13111.m02571 protein erythronate-4-phosphate dehydrogenase, putative, expressed

CDS Structure of MLOC_469

CDS Structure of MLOC_470

Contig Sequence (1615 bp)

>contig_103289 1615 assembly3_WGSMorex_rbca.fasta
AGGGATAATATAAAACCACATATCTATAGGGATGCTCAGGGGAATTTTCAGTATTAATAT
AAAACCACATACCGCCGGCGCCCTAGTCGAGCAGCGCTCGGTGCACCAAGAGTACTCCTC
GAGGGTCTCGCCCTTCCATGCGAAGACGGCGGCCGAGTCATGCGCGATGGCGGTGGCGGC
GTGGTCTTGGGTGGAGAATATGTTGTAGGAGCACCAGCCCGGTGCCGGTCTCGATGAGCA
CGGCTGTCTGGATGGTGATGTGGAGCGAGCCCGAGATCCGGGCGCCCTTGAAGGGCTGCG
AGGGGCCGAACTCGGTGCTGCAGGACATGAGGCCGAGCATCTCCAGCTCGGCCAGCCCGA
GCTCGAGGCGGCCGAAGTCGGCCTAGGAGAGGTCCTTAACCTTGTACTCCCGGCCCGACG
AGGTCTTCTCCACGGAGAGCGCCATGGAGGAGGTTGGTGGATCGGATCTGGCGAAGGAGG
AAGAAGAGTGATTGGAGGGAGAGATGAGAGGAGGCGGCAATGGTAGAGGGTGGGGGGAGG
TGGCGAGGAGGTGGCCGACAGTGGGATAGTGGTCGGGGATAGAAGATTGGATCGAGGGGA
GACGAGGGAGGGGAAACTTTGGTTGGGTTACGGCGGCACGGGAGAGTGATTCGGATCTGG
ATCGAGCGAGGAGATGGGGCTGCTAGCGTTTGGGTTGGATTGTTGAGACCTGAGAGGTGA
ATGAGAAACGTTGGATCTTTCATATGTGGACGGTTCAGATCGGTTATAGTGGGGTGATCT
GTGTGAAGAGCCATGATTGGTTCAGAAAATTTATGATTTAAAATAGTTTCTAAGTACTAA
AACTAGGGAAATTTTGTGAAGCATCTATCAAAAATATTTTGCAAAATAGCACGACTAAAT
CATTTTTAGGTACATAATTATATATTTAATGAGAGAAACACCACAAAATTGTAATATATT
GCATGAAAAATCAATTTCCCATTTTTCCGAGTGCCCAAAATAAGTTTTTTGTGAAGGACC
TACAATATATTTGATGCAAAATTAGACCAAATGAATTTTCTAAAATACTAGGCCATATTT
CATGTACAATTGACCAAATGGTTGCATAACAAAAGTTTTGTTCCACCTCTCGTGAAAAAG
AAAAAATTGTGCCTATTCCGTAGGAATCGAGACAAATTTGAACTAGATGTGCCTCATAGT
TTGCTCATGATTTTTTCCAAAAATAATTTTTAGATATAGAAGTAGTCATTTAATCAGAGA
TCCAACAAATTTTTGGGAAAATTGAACCCATAAATATGAACGGTCATGCCCGGCGTTTTG
ATCACATTTTGAAACGGGCATAAGAAATTCAAGAAAAACAAATAAATGCAAGACCTTCGT
GTTGTGTCATCATATGTGACCAAGTTACCATGAAAAATAATAAACTTGTAAGATGGCTAT
TATTTTAAAAAAGTGTTCTCAGAAGTGAGCTCTCTTCTGTGAAGATTCATGGCTTTTAAG
TCAAACTACCAAGGTCACCCGCGCATTTGCGCGGCTAGATTTAATGGTTTATTCCTTTTG
GTATTTTAAATATATGTTAGATTATACTGTGTTGATGATTAATATGTTAACCTGT