| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_102535
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_360 |
9 |
3954 bp |
MLOC_360.2 |
Available |
Available |
LOC_Os02g32030.1, FRAME:-1, EVALUE:0.0, 13102.m03460 protein elongation factor, putative, expressed |
| MLOC_359 |
1 |
492 bp |
MLOC_359.1 |
Not available |
Available |
LOC_Os01g27430.1, FRAME:+1, EVALUE:2e-14, 13101.m02851 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_360
CDS Structure of MLOC_359
Contig Sequence (5332 bp)
>contig_102535 5332 assembly3_WGSMorex_rbca.fasta
GGACGACGAGGATGACTCCCTGTTGCTTGTGTATGGGGATGAGACGGATGATCCTAGGCT
TTGGCTGCATGGTCTCTGTAATGCTCTCAGTGGTGACCGTTTTGTTACTGTCATAACTAC
GCTTTGGGCGATATGGTGGGCTAGACGTCGGGCGATCCATGAGCAGGAATTCCAAAGCCC
TCTCTCCACACATCTCTTCATTCAGCGTTATCTATCCGAGCTGCGAGGACTGCCAGCAAA
GAATCACCAGCATGGGAGGCCGGCGAGAACACTAAGGCCGCGATGGATTCCACCGGCGAC
GGGGGAGACGAAAATGAACGTGGATGGTTGTTGCGAAGTCATCAAATACTGGGGCTGTTG
GAGTCATCTGTCGTAGCGATCAGGGAGGTTTTCTTGGTGCTTCCGCGGTGGTTATTCCTG
GCATGATCGGTCCGGAGGTGCTTGAGGCTCATGCATGCAGAGAAGCCATTGCATTAGCGA
AAGATATGATGGTTTCAAGAGTACGCATTGCATCTGACTGTCTGAGAGTCGTTGATGAGC
TGAAGGAACAAGTACACCGGGGCGCGCATTGCATGATCCTAAATGATATTCAGGGAAGGA
TGTCTAGTTTTAGTAGTTGTGTTTTTATTCATGAATATAGTAAAAGTAATAGTGAGGCAC
ATAACCTTGCACGGATGGCCACTACGCCGTCATGTGTGGTTTGATCGCCCTCCTGACAAC
CTGTGTATCCCTCAAAACATTATGATATGAATAAAGTGGTTGTCTTTAAAAAAAAGCAAA
CAGTGGCAGATATTAAGAAGGATGCAGGAGGGCCAAACGGTTCCATAGTTCATGAAATTT
CACTAAAAGTTTCCCTTTTTCATTGTAAATTTTTTTTAAGGCCGTGCTGTCAATATTGAA
GCACATAATTTTGTCAAGTATTCACTAGGTTTGGGTCCGGACCGCCACATATGGCTGGGT
CAACCCCATGATCCACATTGTCACATTGTATCCCACTGTCTGTGGTTTTTGATGAATAAA
GTTGACCTTACCCCTAAAAAAAAGCACTCATCTCCAGTTCTTCTTCTTAAAAAAACACTC
ATCTCCATTGCAAGTTTTTCTTAAAAAAAAATCTCCCTTGCAAGTACCTCTCAGAAAAAC
TCCATTGCACGTTTTTTTAATGCAATACAAACGTAAGCCTACCACCCGCTCCTCTTGTAC
CTATCAGACCGTCACGTCGCTCCATTCCCTCTGGTCATTTTCAGCTTCGGTTCCCCCACT
CGCATCTCCCAGTTGCCTCATCATACCCCAGTTTCGAGCTGAGTTTGACAAAGACACAGC
TAAAAATCCGGATCCCAGTCGGCCTAAAACACATGAGCAATGCATTTTTTTCCTACAAAA
ATCATGCATCGACTTGTACAGAACGTGTGTTCGAAAGTGCTAACCAGGGAACCGGGCTTG
GAAGCCGACGACGTCCCACCCACCGTAAAAACTGTCTGAGGACATGAAAAAAGAAATGCG
TGCTAACGCAGCGAGATATAACCGGTGGGAAAAGTCTCGGGTGACACCAAACCTTACATG
CTCCCATGTCCTCCTAACAAAAAAGAAAAAGAACAATTTTGAACGTTCTAGAAAGGAAAA
GGAAACCCTGAATGCTCAGAGCACACATGTATTCGATCCTTCAAAAATTCAGATCCAAAA
TCTAAATACACATTGAGAAGCATAAAAGACAAATCCATCATGATGTCAATGTAAACCAAG
GACGGAAACATAAATGACCTATCCATACCTGGATTTCTCCTTTTTGTTTCTTCATACGTA
TTTCGATTATACGTATGCTGTAAGCCTGTAAGGGCTGGTATAATAGGATATTTCCTCATA
TCCGGTGAAACCCATGTAACATCGACACCATGCAAACGACAGATGTTGGGTCTTCCCTGG
CGGCGCTTCAACTGCTCCAATCGGCGTATGGTTCTGGTGCTTTGTTAAGTGGGTCGTTGG
GTGGCACGTCATCGCTGACGCACCGCTTGAGAAACGGAATATACTCGCGCATATGCAGCT
CCGTTTTGCCGGCCCTGCCCTGTCGGTGCTGGCTTTGAAGATTTCTTTTAACACCAGCAG
CCATTGTCGTTGCCCACCTTGCCGCAACGATCTTTCACCCGGGCAACAACTGCCCGGCAC
TGCGCTCCCTAGCTATGTCCATCTCCTTCCCAAAAATGAACGAATTATCAGCCAATTTCG
CTGCAGAGGTAAGATCTGAAAGTGTTGATACACACCATTAACATCAGCAGCATTTCCTTG
CCATGTACTAGTAGCAATTGTAAAAAAAAAACATCAACAAGCATTTGAGCTTCACCTGAT
AGACTGCCATACGATACTACTCAGCTACAGAGCACCAAATAGACAGGACAGTGTGGCCGG
GCAAGAACCCAAGGGACTGCAAATCATCATAACAGAGAGGAAAACAGCTTATGAATGAAC
CAACAACACAACAGTGGCTAGAACTCACAAACACAATTGCTAGAGACAACAATCAAATAT
ACAGTCAAATACAGTAAACGAAAGCAAGATGTAGCACAAAAGCAAAGCACGGGACAGTAA
AAAAAGATCCACAATCTGATGACAGATATATATATGATCTAAAGTTTAACATCTGTTACA
TCACCACAATCATCATCAAAACATAGTCTCAGGTAGCACCACATACAAACAGCAAGATAC
ACATCGGGAGAAAATAATGCGGCTCCCTTCACAGCAAGGGCAAGTAGCAAAACATTACCC
AAAATTTAGAGCTTGTCCTCGAAATCGGATAGGGGAGTCATCTGCTCCTTGAGACCCTTC
CTCTTGCGGATCTCCGTCACAAGAGTCGCAGACTGGGTGCCGGGGTCCAAAGGATCAGAA
GCCATGATGTCCCAGTGATCAAACACACACTGGGGGAAGGCCTGGCCGGACGTCGCAGCC
CTGAGGGTGCTCGAGAACCCGAAGGACTCGATGACAGGCAGGTAGGCCTTGATGTTGTAG
AGTGGGGTACCTTGCCTCTGCATCTCCTCAAACACGTGTCCTCTCTTCTGATTCAGCACA
CCATAGATACCACCAAGCGCATTCTCCGGCGCCTGGATCTCAACCAGGTACACAGGCTCC
AGCAGCCTTGGCTTGGCAGTGAGCTGAGAAGCGTAAATGACCCTCCTCGCCGTTGGGATG
ACCTGACCACCACCCCTGTGAATAGCATCAGTGTGGAGAACCACATCGCAGACCTCGTAG
CAAATGCCACGCATGTTCTCCTCACATAGTGCTCCTTCCTTTGACGCCCACTGGAACCCA
GCCACAACAGAGTCCTTGATTTCATTCAGGTACTGCACTCCCTTACACATGTCAACAACC
ATGTTCGGGCCAGTCGTCTCAGGTCCAAAGCACCAAATCTTCTTGGCGAGATCCTTGTCC
CAACCAAACTCCTCAGATAGGATCTTGGAGCGGACCTTGGGATCATCACGTGGGCCAATG
CGGCCATCATCGATAGCCTCAGCCAATCCCTCCTCCAATGGGCGAGCTTCCATGTAAAGA
CGGTTGTGCTTGTTGGGGGACTTGCTCATAACTGTACGGCAGGACTTCTCAAGAACAGTC
TCACGGAAGGAGACGACAGGAGGGGAAACAATAATTTCAGCACCACCCATGAAGTCATCC
TGCAGATCCTTCAAGCAAATTTCAAGGTGAAGCTCTCCAGCTCCAGCAATGATATGCTCA
CCAGACTCTTCAATGGTACAGAGAACCATAGGATCAGACTTTGCCAGACGCTTCAAACCC
TCCACAAGCTTAGGAAGATCAGAAGCCGTCTTGCACTGGACAGCAACACGCACAACAGGG
GACACGGAGAACTTCATTGCCCTGATTGGGCAGGCATCAACTTCCTTCTCGTTTGTCAGG
GTTGCATTCTTCGTGATGAACTGATCCAAACCAACCAAAGCAACAGTGTTACCACAGGGA
ACATCCTCAACAGACTCTTGCTTCTTTCCCATCCAGATAACAGTCCGCTGGACACTCTTC
ACATATAGATCCTTCTTCTGGCCAGGAACAAAGTTGGGACCCATGATACGGACCTTCATG
CCAGTTGCGACCCTCCCGGCAAAGACACGTCCAAAGGCAAAGAATCTACCCTTGTCAGAT
GCTGGAATCATCTTGGAGACATACAGCATAAGAGGACCATCAGGGTCACAGTTTCTGATA
GCATTTGCATATATGTCATCAAGGGGACCCTCGTATAAGTTCTCCACACGGTACCTCTGT
GCCTTTGAAGGAGAGGGGAGGTGAAAGATCATCATCTCAAGCAGAGCACGGCTGGCAGGC
AGCCAAGTTTGCATCACACGCTTCATGAGAGCCTTTCCCATCAAGTCCTTCTCATCATTC
TTCATGGTCACACCAAGCTTCTTCAACATAGGCCACAACTTATCCTTCTGATCATTCATG
CAGGTGGCTATGATTTGCTTGATTGGCTCGTAGCAGAACTGAACGAATCCTCTCTTGCAG
GTAGCTGTCCCAGTGTTCTTGGAGGTCCATTTCTTTGTGGCTGGGTCAAAGAAGTTCTCA
CCCCACAGCCTCTCCATCATCTTCACCTCATCAACTCCAAACTTGGAGGCATACATCTTA
GCAAAGTTTGTAAGGGTGAAAGCCCACCCATGCAAACCAGCAGAGAATGCAACAGTCCCC
TTCTCTGGGTACACTTGGACATCACCAAGGAGCACATCTTCATATGTTGCCATGATGACA
TTGGCATTTTCAATGACACGGGAGAAAGTCTGGTATGCTTCCTCACCTTCAAACTGAAGC
TCGAGAAAGCATCTGTCCATCTTGTTCACAGTAAGAACAGGCCTAATCCTCTCACCAAGA
GCTTGGCGCAGCACAGTTTCGGTCTGGACACAGACACCCTCAATACAGTCAACAACAACC
AAGGCACCATCAGTGATACGAAGAGCAGCTGTGACTTCCGAAGAAAAGTCAACGTGGCCA
GGTGAATCAATAAGGTTGATCAGGTATTCATCCCCATCCCTGTCACCCTTGTACATCTCA
AGTGATTCAGGAGTCATCTGATAGAAAAGAGAGATACCCGTGGATTTGATTGTAATACCA
CGCTCTGCCTCATCTGCACGGGTATCAGTCATGCGAACATCCCCAGCAACTTCCTGGGCG
ATAATCCCAGCAGCTGCCACAAGGGAATCCGTAAGCGTAGACTTGCCTGCAAATATGTAA
ATAATATGTGAGAACAGTGCACAAGCATCTGGTTTGACAGTTGAACACAGCCACAACCTA
TATGAATAGAAAATTGAACATGTTAATTTATACTCCCTCTGTAAACTAATAT
