morexGenes - Barley RNA-seq Database

Contig contig_10214

Source Contig contig_10214

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_10214 (1704 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_10214

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_310	1	136 bp	None	Available	Available	None
MLOC_309	7	1163 bp	MLOC_309.7	Available	Available	LOC_Os03g52750.2, FRAME:+3, EVALUE:1e-35, 13103.m05753 protein cyclin, putative, expressed

CDS Structure of MLOC_310

CDS Structure of MLOC_309

Contig Sequence (1704 bp)

>contig_10214 1704 assembly3_WGSMorex_rbca.fasta
ATATATATATATATATATAAAGAATATATAAAATATGTAAAAAAAATAAACATGCCGTGT
TGTGCCGGACCACGTGTCCAGCCTCCAGGCCCAGGCACGGCCCGAGGCGTGCCGCGTGCC
TCGCACGACCCGTTTAAGTCGTGCCGGGCCAGGACCGTGTCGTGCCTGGCCTACAGGTTG
ACGGGTCGGCCCGACTAGCACGACCCATTTAGCTAGGTATGGATCCACGCCCCACACCCA
CCACAGATCCCAGCCCGGCCCACCGGTTAGCTAGCAGTGCATGGTCAACCCAACTCCTCG
CTCTCGCAGTCTCACTCCCCACAAACCCCTCCCCCCTTCCAGATCCGCGCCGCCACCTCC
CTTCCAGATCCGTGCCGTCACCTCCCTTCTGAGGAGCTCGCCGTCATCCTCCTCCTCTTA
CCCATGGCCTCCCTCACACCCTCCTCGTCCTGCTCTTCGTGTTCCTCGCCATGTCCGGGC
CGGTCAGGCCCTCACCACTCGGTCTCTCTCTTTGTGTCCATAAAACCAGACCAAGAGGGG
CTGTGTTCCCCAACCGGTGCCACCCGAAACCCCTTTGATGGCCGGACCGCCGTCGCCCGT
CGCCGCGCCCCTCCCTAGAGGACGCCATAGTATTGTGGCATCCCCTCCACACCCGCTTGC
ATCAGGCGGTGGGCATCTCGCTCGCAGTGTTCACCAGCAGGGGGAGAGGGACTCGATTCA
GCCGCCGGCAGCGGAGGGAGGAATGTCAAGATGTCAGATATCCAGACCTCCACCCACCGG
GAGCGGTGGATCTTCCAGACGCAGGACCTGGTAGTGCTCCCTCTCCGATCCATTCTCTCT
TCTTCACTGCTCTGTGCCGAGGGTTTGCTTTGGCTTGGGACGGATAAGCCTATAGCATGC
TCTGGACATCACATGGTAATGGCATGCTGATGCTGGTGATTCTTCTTTGTTTGCAGGTGG
ATAAGTGGACAACGGCGAACCAGCGTTCCACGGAGATACTCGCCCAGGTTGGGTTCTCCC
TACGCCATTACATTCCTTCACTTGTTTAGCTTACATACATAGTGGTTGCTCATTGTTTTT
GTTCCCTTTGTTTCTTTGTGAAGTATGGGACGACAAGATTGAAGGTCAACCCTGTTGATG
GCTCGATATCGAACCCAGAACCTGTGCCTGATGGTATAGGTACTCCCCATTTGATGGTTT
CTGCTGCCTATATGTTTATATGAGTAGCCATGAGCATCAGTGTCAACGTGCTAATTTCGC
TTCAGAGTTTTGTTCTTTCATAGTTGTGCTTGTTTTCCATGTTGGCCAATATTCATCGCA
AGTTTTTACAGCATTTGTTGGACTAGTCATATTTAGATGTGTTATAGTGTTATTAAACCA
CTGTTTTGGATTCAGTTCTTGGGAGCTCTAGTGTGAAGCCTCTATCCTGCAAAGAGGAGC
AAGTGATGCTGATATTTTACGAGCAAAAGATTCAGGAAGTGTGCAGAGCATTCAAATTCC
CCCACAAAATTCAGGTAAAGCATTCCTCTTCCAAGATGTCATGTGCATTTGCTTACATGT
ATCTCTATCTCCTTGTTGTATCTCATATTATTGACTTGCATATATTTCATTGGCCTCTCT
TTGCGGGTTTGGCCATGTTATCTGAGTTTTTAAGCTAATATTCTGTGTTTTTGCTGTATA
GGAATGTCTCCCTGCCCGCGCCAT