morexGenes - Barley RNA-seq Database

Contig contig_101311
Source Contig contig_101311
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_101311 (10090 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_101311

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_208	1	1422 bp	None	Available	Available	None
MLOC_209	1	3009 bp	MLOC_209.1	Available	Available	LOC_Os02g19330.2, FRAME:-2, EVALUE:0.0, 13102.m02163 protein expressed protein
CDS Structure of MLOC_208

CDS Structure of MLOC_209

Contig Sequence (10090 bp)

>contig_101311 10090 assembly3_WGSMorex_rbca.fasta
GCGGCCCGAGCTCCTCCGCCCTTCTCTTCACCGGAGTTATGGTCCGCGAGGACGAGGCGC
CCATGGACGAACTCCCAGCAGCAAAAGAGTCGGGGGAGCCGATGCATCGAGACGCGAGCT
CGTGCTCGTACTCCTCGAGCTCATGGCATTCGAAAGCCAGCGGTGGCCGGAGGCCATACT
TCAGCCACCTCCGGGATCCCTGCTTGCATGTGGCGTCGGAGACGCGGCGGCAACGGCGCT
CGGCGTCATCCCTTCCATTTTCGTCGCCATCCATGGTCGGGACAGCCTGTTGGTGGTTTT
TTTGGCTCGCTGGCGGCGAGAAATTAGGGCGGAGTGGGAGTTGAATCGCGGCAGAGCTGC
GACGGCGGAGGTTAGGGTCCGACCCATAAACGCGTTGTAAAATCGTATATATGCCGGCTC
GAGGGGTCTTTTTGTGGGCCGTGATAAAATTTTTACGGGCCGGACGTGCGCTACGGGGTC
TGTTCTGACCACTAAAACAGGCCGAACCCGTATACTCGCCGGAATTTTGTGGGTTCAAAC
CTTTTACGGGGTCTGTTAGAGATGCTCTCACTGCTGAACACGGGTGACTATGGACACCAT
ACGATCAAGGCTCTGATTGGTGTTGCACCAAAACTTCAACTAGCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTTTTTTCCGGACAAGACGGATTTTATGATGAATTCTCGAATCATGAAA
CTAATTTGGATCAATTCAAGACACATATACGTAATGTGTCACGCCTCCTTCCCCAATGCT
TCTCAATCCCACCATACTTCATAAACGGCCGGGTCGGCAGAATCGACTTAATTCTCTCTC
TGTGTGTGTGCATCTACTCAAGACGCATATATATAGGGATTGACTATTCGTCACCCTAGA
TAAGGAATAGTTATTCTACACCGCCTCTATTTTCATATCAATGCATCATAATTTTACAAT
TCATAAATTTTGTCTTATTTCATATGTAAAAAAAAAGACCATAAGAAAATATATATATAC
CATAAAAAACCCTAAATGTGCAATGATAAGCTGGTGTGGTCAACAACTAGAGGTTCTAGT
CCATAACTTTCCATTTGTTTTGGTTTTCACACGCATCATGTTAGCTAGATTAAAAAAAAT
AAGAGCCACAAGAGGGGAGATGTGATATTATTTCTAGCTCATGTGTTGATTCTTGAGTTC
AAAAATAAAGACAAGTCAAAAGCACCAACATTATCAGGTAAAATCACTATATATCAACAT
AATAAACTACTAACAAACATTTGTGTCAAATCAAGCGCTAGATAAAAACTCAAATGCTTG
GCTTTAAAAATTATGATTTGTCAGCTAGTTCAAATGCCTAGCTTATATACTAGCAACTTG
TGCCAAATCAAGTGCTAGAAGAACAACAAAAGACCAGCTCGCGCGTGGTAGCGACTCACT
GAGACATTGGACTAGAAATGTTTGGATCAAGACACACGAGCGCACACACATAGCAGCAAC
AGATCGAGGTATTGACAGGACGGGATGATTGGTCAGGCAATACCAATAGGCTTTGTTTGC
TGAGCCCAACTGCACTTGCTACCACTCAATGAGCACGGATCACGCAGCTAGTACATGCTA
TTACCGGAGCTCTCCTAATCCGTTCAAGGCGCAAGACACGCCTCTCCGAGCCTAGTCCGT
GAGCACAACATCCTTGTCGGAGAGCTTGGGATCTTCATCTTTCAGTCGATTTGAATCATG
GAAACAAATGATGTGCCAGGATGCGTAGCACCTACTTCCTCGTTGCCTCTTAATCCATGC
ATCACATTTATGATCATCAACTCAGCTCTTGTGCAATAATAACACTAGAGGGTTTGCACT
TTTGCGATGATGGTGATGAGTGAATAGGTGAGCCCGACTGCCGGATGATGTTGCATTGCA
TGTGCCTCCAGTCATGTCGATGTATATAATTGTGTAATGATCAATCAGCTCAAGTAAGTG
AATATATGTCCCTGGTTGGTGGTGACCCCTTCCACCTATAAAAAACGACCGACCGACCTA
GCTAGCTGGTGAGTAGAGAACATGGCTGCACAAGGTTTCATAGAAGTTCTGTAGAACGAG
TGAGTTGATATAGCCAACTTCGCTATGTGGGGTGGAGTTCCTCCTTGCGAAAAAACATCG
CTCTACTCTCTTCTTTCTTGTTGATTGTTTGAAATAGCTAAGTGCTTATGCCAAGCGATG
ACACCATCGCTCTTCTCGTCGGTACATAAAAAGATGAAAATCAAAGTGTAACATTGAAGC
TTATGTGATCATTTCCCGAAACAACAAATATTTGGCTACAAAATTTGGGTCTTCAGCTTT
AGGAGTTGACTAATATTGTTCAAAAAACATGAACTACAGCGGACATAAATACATTAGTAT
GCTATAAGAAATTGGCATCCATCCAAACAGTGACCAAACCAAGAAAAAATCAATATTTGT
CTTGGTAGGATGAGTTTCATCCACGAGTTTTCAGAATAGTTAGATGTCACATGTTTATTA
GCAATTTAGCACGTCAGGTTGTGTTTCACCGGCCTTTTGATGGCAAATAAAATGTTAACG
CAGATGATGATGATGATGCCAATGAATTGGTTGCAAGATCCTTATGGATAGTCTACCCCA
ACTTGTTTTGTTATTATTGTTGTTGTTGTTTGTGATGATGATGACGCCAGATATGTGTCA
CCAAGCGTAATGGCAGTAGCAGGTTGGATGCTTCCAAAATTTGATTAAGGCCTTGTACAA
TGCTAGATGCTTAGGAAGGTGCTTAGAAAAATAAACTAATTTTTTTTAAAGCATCAGTGT
CTATTTCTACAGGAGAGACACCTAACTAAGTGTCTACCATATACAAATAAGCACCGGTGT
TTAAAAAAGCCTAATTTATTTCTCTAAACATCTCCCCTAAACACCTTGCATTGTACAAGG
CCTATAACTAGTTAAAGATGAATTTGCGCATATGGTTCTTGCTGGTGTTCTCATTTGGGT
TTTCGTATGCATCATGCTAGCCTGATTAGAAAACAAACAGGAGACACAAGATCTTGTTGG
AACCTGTATGATAATTCTCTAGTACGAAAATGACGACAGGTTGAAAGCACCGGCATAAAT
TCTAGACGAAATTACCTTTAGCAAAAGTAAGGCGGCATACCAAAAAGACCAACAGCATTA
TCAGCTAGTACTAATTAACCCAAACTGCTGATTTGTCAGCCTGTTCAAATTTAGAAGCAT
TTAACAGGATATTGGGAGTTGGAGTAAAAAAAAACACTCCACCAAGACTTTTAGGGCATT
AGCTAGGTGCACGGTAAGAGAGTAAAACCAAATTTTTACTCCCTTGCGGCCTTTTAGGGG
ATTAGTTAGAAAAGCAGTAACACCATCACTCCTGTTGTTCGTACCCTAAAGAAATGATGA
TCGAAGTGTAACCTTCAAGCTTGAGTGATCATCAAAAAACATGAACTGCAGCAGACAAAA
AGGGATTGGTGTGTTAAGAAATTGGCATCCATCCAAACAACAACCAAACCCAAAAAATTG
GATATTTGTCTTGATGTAGGACGAGTTACACAAGTTTTCAGAAAAGTTAGCTGCCGCATG
TTTATTAGCATGTCCTTTTCACCGGCCTTTTGACGGCAAATAGTATTTCAAGGCAAATGA
TGATGATGCCAAATACGCCTGACCAAGCATATTAGCAGTAGCAGGTTGGCTGCTTCCAAA
ATCTGATTAACTAGTTAACAAATGAATTTGCATATGTTGTTCTTGCTGGTGTTCTCATTC
GGGTTTTCATATGCATCGTGCTAGCCAGATTAGAAAACAAACAGGAGACAGGTTGAAAGC
ACCAACATGAATTCTAGACAAAATTACCTTTAGCAAAAGAAGGTGACATACCCAAAAAAG
GCAACAGCATTATCAGCTAGTACTAATTAACCCAAACTGCAGAAATGATGATTTGTCAGG
CTGATACGCAAGGCTTGAGTAACAATTTGTGCCAATTTAAGCACCCGAAGAACAGAAAAA
ACAGCACAAGCCATCAGGAAAACAACAAAATTCATATACGAATGACAAAACTAAACCGCT
AAAACAAGTTCAGATCGTGCAATGGAAAGCAACACAAAGCACCCTAAAAGTTTTGACTGA
CAGAACGAAGGCTTAGCACATTCAGTGATCATGTTTCCCTCGGGCACCATCCACTGTAGC
AGCCTTCTCTGCCCAAGTCTCAACAACATAATTCATCAATTTCAGCTTCCTCAAGTGGCC
AAAGATCATCCTTTGTATATTTGACTGAGACCATCCTCCTTTGCCATCACTGCAATATTA
TATGTTCTTCCCACCACTCGCAAGAACCTAAAAGTTTAACATCTACAAGTGATCAGCTAA
CAAAAATAAAACTGGAAGGATAAACTGAAAATACAGGTTACAACACAACAGTGACTTCCA
AATAAATAAAAGGTCAATATAGATGGTAAGGATCCAAGAGAAAGCAAAACGATTGTAGAA
GAAAGATCAAGAAATTCCATTTTGGACCCTGCGACTGAATAGCATCCTAACAGAGAATTT
TGATGTTACAGCAAAACTGCAACTAAATATCACCAAAAATTCAGATACTGGAGATTATGC
TCTTTGCTCGACGTGTATGTTCGTATAAGTTGCAGACCTATGGAGATAATAAATTGATGA
TTTTTTTCTTGTCAAAACAGTGTGACAAAACATGGAGACTGAGAATTGTTCCTTTTTTTT
CTTTTGGTATTGCTGAGAAAAGCTGTAATGGTATAATTTTTGAACAAGTATGAACAAGCA
TGTCTCATCAACTAAGCAAAAAATGTAAGTGATCGCAATCTAATGTAAACACCAGTGGTG
CCAGTGGTGCTTTCAGAAAGTAAGTGAAAAAGGGCTGTATTACATATAACATAGGACTCC
TAAGATTCAGAGTTATAAAAAGAAGAGTAGAATAGACATTAACGGAAGCAAGCTATGATA
AACATTAGCGAAGAGCTATACCATATGAGTATATAGATTACAGAAAGCTGTTCTTCTATT
TCAGCTCTGGACATATTCTGATGTCATCGGCACATTACCAGACCCATGAGAACTAGAACT
GTTGACAGGCACAGTGCGCTGAGCGAAACTGAGCAACTGCTTGCGCTGATACTCATTTGT
GTGAGGAAGGCTGGCACGCAACAGCTCCACTGGTGTTTCCCTGCTTATCACAGCTGCAGC
AGCAGGTTGCATTTGCACTGTATGAACCACAGTATCGAATTTACTCATGCAATACCCCAT
AAGCAGCCCGAAGAAGGCATCAAATGATGCCTGCCATAGAGCTCGGTTCTGCATGCTGTA
GGCAGAGGCCACATGTTGATCAGTAAGAAGCTCTGTAGCTCTGTCCAGTACAGACTTTAT
GATGACAGAAGCCCCATCGCCAGCAGCATATCCCAGAGGTCGAAGAGGTGGTTGCTGTGA
CGAACACGCAACAGCTGCAAGACAAGCACTGAGCCCACTCAAGTCCATCCGAACAACACA
GGTGGATACGGTACTTACAAGTTTAGTTGTGGTCCCAGCTATGCTGCTATCAGAGGGCAA
ATTGGCGAATATAAATCTTAGATGCCGGAAAACTGCCATGCAAACTATCCTTGCCAGCTC
GCTGCCTGAAGTAACAAGATCAATATAACGAGAAAGTAATTTCCGACCCTTCGGAAGAGA
TACTATGCGGAGAAACACTAGATCATCATTTGGCAACAGAGATGCATCCTTATTAGGTGT
GAGTGGATCAACTAATTGCAGTGATTCTGCCAGCTGCTCGAGAAGAGCCTGTCTTCTGTT
TCTCAGTTGCAAACCACCATCTGGCTGTTGACTGAAGTGAAGCAAACGATCAATATCATC
CACATCCAGTAGTAGGCAAAGGCCATCTTCAATTGTGATTCTAGCAGCCAGCATCGGCTC
TTGGTCAAGAGATTTTGAAGCAGATTTTTCAGTAGTGCTATCACTTGGTTCAGAGGCTTC
TTCAACATCAAGGAGCGGACGGGGCCTGCGGATGGAAGAAAATGGGAGCCTCCCAAGAGC
ATCAACCTGAAGATACGCATGTGGTTCATCCTTACTGCGTGCACGAGATGATGGATCTCT
GATCAAGGTTGGACAGAAGTAGTGCCTCAGTTGTGCTCCTGCTGATTTTCTGGACAAACA
AGCTTGATGATAATAATCATCAATATATGGATCGGTGATCTGAGTGGCAGCTTTCTGCAT
CCTTGCGATGTTCTCAATTTCTTCAGTGGACATGTACTTGGATCTGAACCGCTGCCACCT
ATTGTCCATTCTCATATTGGCAGGCTCAAAACCTTGGGGAGGATAGCGTGGGCCATGCCT
TCCATGGTGTAACATCGATCTTGCTCTGGGATCACTCAAGTCAGGCATAACAAAATTTGG
ATCAAATCTACCCATCATTTGTGGTGAAGGATGCCGAGGACCAAACATCTGCACATTTTG
TGGTGGAGAGTGTTGGGCACCAAGCATCTGGGCATGTAGTTGTGAGAACTGGGGTGGAGA
GTGTTGAATTGGGAGCATTCCATTTTGTTGACGGGGTGGCGGCATTTGAGGTGGCATAAA
TCCATTTGGATGCTGCATCAAAGCTGGTGGAAATCTGCTGCCATTCCCACGAATCAGTTC
AATATTATTGTATTGCGGCTCTTGGTGAGGATATGATGACATTCTCTGCAAAGGAGATGG
CCTTGGTCCGAGAATAGGTTCAATAGGATTATACTGAGCATCTTGTTGCGGGGATGAGGA
TGTCCTCTGAAGTCTGGAGTCAGCAAACTGGTCTGAATGGGGTGGTTGAGACCACCAGTT
TTTGTTGTCCAGCCGTTGTTCAGCGTCCAATGCAGGCTGTTTAGGCCAGTATGATGATTC
AGCCTCTTGTGTCCAGTCAGCAGAGGAAGCTATAAAGCACAGAATTATAATAAAATGATT
AAACAAATAAAAATGATGTTAATGTGTATAGCACTCAACAAAGCAACAAGACAACAAAGA
ATTTGTTTTCATTAGTTAACCCAAGATTTGCCTTCAAACAATGACAGACTGGCAGTAGCA
GCCATATTATAGTAATTACATTGGCCAGACATAAGACATAACAAGCCAAGTTAAGTACAT
CATGATAAGTGTAGCTGTGGCAGCAAGTTGAAAGAATTTAGAGAATATCTCTTAAGCATT
TGCAAACATGCTCTAACAGCATGCATAATGCAGCAAACATATCCTTCAAAGACAGAAAGG
AAATTAAAACATAAAAGCATATTTCCTCAAAAAAAAGAGTAAATCAGCATTACTCACTTT
GTCCAGGTAACGATCCCCCACGACTAACTATTCCTGATTGCTTTGGTTTGTTAACAGTTC
TGGACAGCTGAAATTGTAAATAAATAAATCAGCCTCACCAACAAACAGGAATAAATGAAA
CACGGCAAGCGTGCAAATTAGTTACACGTTAATTTTGGTAAAACAAATGAGAGCTCATGT
GACTATATCAGTATAATCTTATAATATACATCCGATAATCTTAAATGCACTATGTACCAA
AGAATCAAACCTTTGAGAATGCCCCGGCAAGATCATCAACACCAGTAAATGAACCTACAC
CTTCGTCCTGCAGAAGCAAAGCTTGACCAATGAGCTGTTGATCTTCCTATACAACAGAAA
AAAAAAAACTTTTGCAATCTTTTAAGGTGATAAGAAATTCAGTGGGACAGCATTCTCAGA
TCATTCCTAAATGCATGTTCGGGATCCAACTGTTAGTGGAAAATAAACAGAAACTGGAGG
GAATGAAGCATGCAGTACACACAACTTGTAATGGTTTCTACCTTAAGTCAGAACTGAAAC
TTGCTTGTGTATAGTTAGGACTGCATTCAACGTAAGCTTTCTAATTTTTCCAGGATATGC
AAGGAGGATTTCCAACCATAGCTGTATACACTTTACAGAGTTAACTAATAGTTCAAAATA
GATACGCCAACTTCCTCAGTTTAAGCGGATTGTTTTCTGAATCATGATAGCATTAGTAAC
CCCAGGCTTTTGACCAATATACACGGAAACAGTTAGCAATCACAAGAGACAATGCCAGCT
TTTCCCAGTTTACATAACAATGTATATTCCTATTTGCCTATTTGGCCGCATGTGTATACC
TATAATGAAATTGGTTGCATACTTTGCATCCTCTATCAGGCTCCTGATGGCATGAACCAA
ACTGAAAACAAGGGCTAGAACAGATTGATCCAAAATTAAGATATAATTTCTAAGAGAAAG
TCTCCTTGTGCTCTGAAGTCCACAGGGAGTTTGCGACCCTTGTGATATAGAAGGAAACCT
CACAATGCTATCTCAATGCACAAGTTACCTATTTGGCACATCATCTCACAAACATAACGG
CTATCCACTGTGGGTTTTTATTATTTTTTGAAAAGAAAGACCAAAAGGCGCACAATGGGT
CACGTCAAAACAGAAGAGCTGTCCTCCATTCTACCATATATCTTACCTCCAACATATCCC
TTCCATAATTAGGAGTGTATTCTTCGTCACCGGGCCCAACAAAACCAGCATCACCAGCAT
CATCATCATCCAATCCACCTAGCTCAACCTCCTCCAAGACATTGTTACCAAAGAAAGCAT
ACTGTGATGCATCAAATTTGGTATCACCTGCACAGGAATAATGTAAGAACCCAGCAACAA
TAACTGATGCTATAGGAGAAGAAAGCAATATAAAAATACTATATCGAGAACATTCAATGA
GAACAGTGTTAGACTAAGGCTGCATTTGGCATTGCAGTTGACTGTGATAACCCGTTAACC
AGCTTCTGCCTGTTTTAGTGTTTGTTGAGTTCTACCCTCTTTTAATACTTTCATTTATGC
CTTAAACTGCTACAGCAGATTATAAAATAAGCACAGCACAACACAGTTCAGCAACCGCAA
CCTGAGCCTAAAGCAGCTACAGGCGGGCTCCGCAATAGAACACGGTTATGAGATGTTAGT
CATATACATCATGCAGAAGTTAGGCTATCACCAAAAGAAGCAATTGAAACTGCAAATGTA
GATATAAGTAAGCTCATCCCACCACAGTGATTGAATTCAATCAATGCCGCAGATTTTCGC
TACCCGTAAAAGTGTGGGAACAGAAGGTTAACCTGTTGCAGAAGAGAAGCAGAGGTGCCA
AACTGCGGTGCTTCAGTGAGAAGCACCCACGTGCATGATATAATCCCCCTTCTTAAACAG
ATGTGGTTTTACAATAGTTTTGACAAATTAGGCGTACTCTAAATGATAAATGCAGGGAGT
ATAATTCAATTGATGCTGCAGATTTTCTGCTAGACATGGAAGCATGGGAACAGAAGAATT
CTTAGAACAAATAACGACAATCTTTATTGATTCGCTCGCTCCACCGCAGAGCTAACCCAA
AACACGGTGGGCACCACCGGACCAGGACTTAATTCCAGCAGGTGACATTAGCTTAACTCA
CAAGCATGGCCAAACAATTAACAAAATCAGCCCCGTATCCCAGAGAATAACATGGTATAA
TCTCAGCTAATTTATTTCAAGATGAGCTTTATCAGTGTCACTTTTCAAAAAATAAAGATA
AAAAAGTTTGGTTCAATCCAATCATCATTATCACAAACTAATCCCTCTGAACATTCTACT
TTCATCAGGGGAATACATAAAAAATAAACTAATCAAAAGCAAAACTGACTAGTCACCTGG
CTCCATAGCGCGGGGGTTCCTGAACCCCCAAAATTCCTTGAAAACAAGCTGAGATCTCGA
AGAGCAGAGCCGAGCCGAACCGTGAAGAGGCTCCGCTAGCACGAGGCGAGGCAGCGAGCA
AATCCGTGGCTAGCTGCATGGAGCGAGAACGGGTCGAGTTCGATTTGCTGGCAGCAGAGG
AAAACACAAACCCCAGAAGAGCCGCGCTAGGGCTTCCTTACCAACACAGCCTGGATGGAT
CTCCCGTCCGCTCCGAGCCAATCGAGCAGAGGAGACGCGGGGGAGGAGGAGGGGGAGGGG
AGACTCCCGGGCGTTGCGCTTCCGCGGGAGGGGGTGGAAGGCCGGACGGCGGCGGCGGCA
GCGGCGGCGG