morexGenes - Barley RNA-seq Database

Contig contig_100719

Source Contig contig_100719

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_100719 (6308 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_100719

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_114	1	335 bp	MLOC_114.1	Available	Available	None
MLOC_115	2	1827 bp	AK367356	Available	Available	None
MLOC_113	1	948 bp	MLOC_113.1	Available	Available	LOC_Os01g73940.1, FRAME:+1, EVALUE:2e-16, 13101.m08075 protein expressed protein

CDS Structure of MLOC_114

CDS Structure of MLOC_115

CDS Structure of MLOC_113

Contig Sequence (6308 bp)

>contig_100719 6308 assembly3_WGSMorex_rbca.fasta
AGCGGGCGGGGGCGTGGGCGTGACGCGAATGGGGCCAGGCTAGCGGCGCGGGGGCTGGAG
CTTAGGGTGCTGGGGAGCGGACGGGCGCGGACGGAGAGCGTCGCCGTGGACGCCGCCGCT
GCCATGGGACCTGGCCGGCGAGGGGAGTAGGCGGTGCCGGTGGCTGTTGAGCGAAGTGGA
TGAGCCAGAGCTGGAGAGTGGGCCGGGCCGCAGGTAGAGCTGGGCCCAGAAATAGTAATT
AAAGAAAAGGTTATTCCGTTTTGCATGCGAAACTTAAATCTTCCTCGCCTAATTTTTAAA
GTTATGATTTTTTTTTAAACTATGATACTTTAGAAAAAAAAAAACAACTGTGATATTTTA
AACTATGATATTGTTTGCAAAATCTGGCGAAAAATAAGATTGCATTAGTATGCACAAAAA
GAGACAAAAAATTCAGCTCTGAATAACATATTATGTACTCCCTCTGTAAACTAGTATAAA
AGTTTTTATATTATAGTTATCTAAACACTCTTATATTAGTTTACAGAGGGAGTACTTTTC
CCTCCATACCTAAATACTTATAACTGAAGATAACTAGTCTAGTTCTCCCCAACTATTAAT
ACTAGTAGAAGATAACCCGCGCGTTGCAGCGGGATGGTAGGATGAAAATATAAATAATTA
GGTTGATGACATGAATAGTAATGAGAATTACTTAAGATGTGATGGAAATGGTAGCCATGC
ATAATTTGTTGATGTCAAAGGGTTGCATGCATGGATAAAATAGTTAATGGAATGGTAGAT
TAATGAGCTGACCGCACATGCATGGTTGGTTGATGTGGAAGCTCTGCATGCTTAGAAAAA
ATAGTTAGTGGGTTACAACTATTTAAGAATAGAAGATTTAGGTAGAGAGAAAGTGTTCCT
TACTACCAAGCTGCACCATTTTATTTTGTTTTATCTGCAGACTGCACTTGGTAATTATTT
TTACAGAATTTGATAGTCATTTTTTAACAACCAAATTTGCTAGGAATCAAAATAAAAATC
AATGACACCTTCCAAATATACATTTAAAAATAGCAATATTGCGCCCGCAAAATCTAGATT
AAAACAAATTGTCCTACAAAATATAAGTGTATGTAGTTTCATGATTAAGACGAATGAAAA
GCATCTATATGTGCAACAGGCAAGCGAGCAATGAGCATCTATCAACATCTTGTATCAATA
TCCAATCATATATCACATTTTGTATGCAAGGTGGCTGAATTTTCATGACTACGGTCACAT
CTTGTATCAGTATCCACAATCGTAGGGCATAGATTTCCAAACAAATCAAATGGTCCTGGA
TAATTGATTGACCAAATGAAATAAGATCAATCAACTTACATATAGCAAAAATTGATCAAT
TTGCAAGCTAACATGTCTTGCAAAATGGTCGGAAATGCATTTCGGCTCCAAAATGGAAAG
AAAAAAATCAATACAAAATTTATTTGTATACTTTGTCACATTCAAATGCTACGCGCAAAT
TTTGAGGCAAAAAGGTAAAACATTTTGGCTTGTGTAAAAAAACAAATTGAACATCAAAAG
TTACCCAAATTTGTTTTTTTTTGCCGACGAAACACCGTTGCTCTTTATCGCACGAAAATT
GTTATGCATGTTTACGACACTAATACAATCATCTACAAAAAATTTCAGAATATTTTAAAA
ACATTTAATATTATTTTTCGTGTTACTATTCACCCCGGGAGCATACCAAAACATCGCCTC
CTCAAAATGGTCTTATATTATGGGATGGAGTATATACAGCCAAAAGAAACGAACTGCTGC
GTGCTGACATTCTAGAAAGATGATAACACTACCAGCAGAAGGCCTGCAAGTTTACAACTG
CAGTAAGGCAATATCAAAAATTTGACAGCAACCAAGCGCTCTCGCTTTTCTAGAATATAA
ACGGTTACATTTCCAACCATATAATAAAGGATCTATTAAATTATCAAGATGCCCATGTGA
TAAACATTCCGTGGAAGATAATGCTAGCGCGTGGGATGCACGAAGCATCTTCCGAGGCGG
GAGCATATCTATCTACCTATCAACATATGACTGCTTTCTGTTGCCAATCCCCATCATGCC
AAACTCTGTCACGAAACCAGCGCCATGGCTTGAGCCGCAGAGCGCCACCGCATCGGATAT
GCCTTCCAGGCAGCGTCTTCCGCACACTTCTCATCTGATCGTGCGGGGAATCCGTCTCTG
CAGGCAAACGGGAGCAGCAGTTAGGTCCCTTTCATTGTGGTTGTAGGATATTATTATTTG
CAACCAGGCACATGGAAAGTTGACACAAGAAACAGAAAAAGCATCCAGTTCTTTTCGGGA
AATGGAAAGATGATAGGTTGAGAATCATATGCAAAGGAACGGAGCAATGGTGGTAGCTCT
CCCCCGCAGGGAAGCATCGTACACGTATAATGTTAGTATAACAGTTGCAGCATCTATACA
CCAGAGCATGGCTTTAAATTCATACGCGCCTTTAGAAAAAAGGAACGCCTTTGAAGCAGC
TCAATAGCCATTCTGATACACGCCCTTTCAGAAACAGAAAGATGATAGGTTGAGAATCAT
ATGCAAAGGAAAGGAGCAGCGGGGATGGCTTTTTGTTGCAAGGAAACATCCTACACGTAT
GATATAATAGTCGCAGCATCTATACACCAGGCCAGAGCATGGTTCTAAATTCATGGGCAC
CTACCTCTACTACCAAAACAAAATTTGAAGCAGATTATTATCGCTGCAGCACAACTATCC
CTCAGTCAGAGTTCGTGTAGACATGGTCACAGGGATGAAATTAACTAAAAATATAGTGAA
ATAAATAAACCCAGTAAAAGAGGTAGTGACCTAGAACGTCTTATATTTGTTCACAGAGGG
AGTAGATCATATATATGCTTAGGACTTGGATTGTTATTCATAGTTAATAAAATGTGCAAA
AAGAAGTCCTTAACTGGTCCAGGCCAGCGTATGAAAGAAGATATCGCTTATCTTTATCAG
CTGAAGGGGAAAAACAACTCAGCGCATCTTATTAAAAGAGAGAGAGAAGAAGAAGAAACT
GCAGAAGGAACTAAACTTAGGTTCATGCTAAGCTAGAACCTTATAGCAAGCTAAATTACT
TTGCAAGATAAGGATTGAGTCATTCAACGCCTAACAAATTCAAATGAAGAAAGCTAAGAA
GAAAAGATGAAAGAATCGCTAAAAAAATTGTCAAAAGTGGAGAATAAGCTTCCTTACTTT
TCTAATGAACTGAACATATCACAAATCACTGCAGTATAACTATCACTCAATCATAGTTCA
TGTAGACAGGGTCACAGGGATGAGATTAACTAGAAGGAAGTGAAATAAGCCCAGTAAAAG
AGCTAGCTCATATGCTTGGGACTTGTCTTGTTATTCATGGTTAACAAAATGTGTAAAATA
TATAATTGCCTTAACTTGTCCAGGCCAGCATATAAAAGAAGATATTGCTTATTCTTATGA
ACGGAAGTGAAAGAAGAACTCAACTGTGTCCTGTAAAAAAACTGCAGAAGGAACTAACCT
GAGGTCCATGCTAAGCTCCCTAGCAAACCAAGTTACTTTACAAGATAAAGATGGAGTCAT
TCAACGCCTAACAAATTTGAATGAAGAATGCCAAGAAGAAAGAAAACACGGAAGGTTCTC
TCAAAATTGTCAGAAGTGGAGAATATGATGCCCACTTGCAGTTTAAGAATAAGCATCCTT
ATTGGCCTATAAAAGAGGAGAAGAGAACATCACAGCAGCAAACCAGTTCCTACCCTTCCA
GCATTTCCTCGCACCCCCAAGCAAGGAGCCACAGAGCCATGTCGCACACTCGTATGCTCT
ACTTCCAAGCCCACCATCCCCATGCCAACTTTCAGGACAACCATGCCAGTGTTATGAAGA
AAGAAGTAGCAGTGGGAGCAAACCATGTCCAAGCGCCCAAAAAACAAGTCAGGTTTCAGG
ACAACCATGCCAACCCTATCAAGATAGATGATGTGAACACAGATGTGGATTCGGTGGCTT
CGGACTTCATCAAGCGTAAGCACATGTCTTGGGCACTCCAGAAGAGCACAACCATGTATC
CATCTTCTTAAGAGAACCAGGGTTCCTTAGTCGTGGTATTATCTGCTTATGCTCTGTCCA
GCATGAAAGTTCAAATAAGAGGTGCTGCTTGGAGGTGCCCTAGATATCCCGAGGTTGTGT
TATTATGGTGTTCTTATTTGTAACATGAATAAGACTGATGTGGATAGGCTGTACTGCTAT
TCACCACTGTATGATATTCTTATATATGAAATGAAAGTATGGTTATTACTTATTACAGTG
ATTCTGTTCGGCTTGTTTCTGTTTGAAATACTATGTGAGAGGATAAGCATTCTGTGGAAT
ATTGGTCTTTCTGTAAACCATCGATTTAGGAGGGATAAATTATGGACTCCCATGATGGTC
AATTGTTTACAAACTTCCCCTATAATCCGAACATTAAGATACCAATAAAAATGTCTTACC
TAAAACTTCAACAAAGTTCTGACTATATCAGCCTATAACACAGAAAAAGAGTATATGCTG
ATAAATAAATTTGACAGGCATGCCACAGTAAGCAACCTCATACTAGCTGTGAGTTCTGAC
TAAACCAATGGACCTGCTCATCATATCAACACTAATTGTTATAGGACCATATATATCATA
ATTCTAAGCTCTAGATATGTGGTGCTGTAGCTCAAAAGGTTGTGATCAACACGAAAAGAA
GAAGGTAGAGCATGAAACTTAGGTTGTATTTCAAATGGAATGGCATTTGCAAAGACGCAG
AAAGTACTGTGAAAAAGAAAGAGATGAGAAAGGACAGAAAAGACAACTCAACGAAGTATT
CGCATTACAATTATTACCATGTAACAACTCATGACCAGGATTACTAAAACAACAGCTATA
GCTAGAATGCAGAAGCAGGAATTCACCATTGTCTCACCAGCCATTTATTGTGCTTCAGTC
AAGCAGTAGCCTCAGCTTTTTTTGGTTCAAACAGCTCGATGACATCATGATGCCTGCGGA
TATGGATGGGGCATTTGTAGAGTAAATCCTGAGCCTCTGAGTATCTCCCCTCCGCAAAGA
ATGCCTTGAAGATCTGCACGTAGGTAGGGGGCTGCGGATAGTTATTAGACGATCCTTTCA
GGGCCTTGAGAAAGTCCCTGGCATCTTCAAGCGTCCCGTATTCAGCGATGTTTGAAGGGA
AGGGGTCTGCAAAAGGCGGAAACTTGCGGGCCTTCATTGATTTAAGAAGGGCCAGTGCCT
CCTCGAGTTTCTTCACCCTCAGCAACTCGGCAATGATATGCTTGTAAGTGCCTTGCCACG
GGGTCAACTTGGCATTGTCCACCATCTCAACAAACAAAGTGTAAGCCGCATCAAACTTGT
CCTGTCTGCACAGACCTTTCACCATCACATCCAGCAAATCGGCGTCTGCCTCCAAGTCCT
TCTCGATCATCTCTGTCAGGTACTGCAGAGCCTTGTCCACCTCCCCGGCCGCACAGTGCC
CTTGGATCAACATGGTCCAGGTCTTCAAATCCGGGGTGCAACCCTCAGCCTCCATTTCAT
CGAGCACCTGGCGAGCTTCATCGCACTTGGCGGCCTTGCACAGCCCAAAGATCAACTGGC
TATACGTGATATTGTCCGGCTGGTGGCCAGCGGTTCGCATCCTTTCCACGATCTCCGCGG
CCTCGTCGAACCTGCCATTGCTGGTGAGCGCCCTGTGGATCCCGTCGAACACGTTCTTGG
TCTTGAACTCGTAGACGGCCTCGAACTTCCTCACGACGCGGTAGACCAGCTCGAGGTCGG
GCTCCGGCCCCATGGCGATGCGCCGGAGGAGCAGCGGCCCGTCCTGCTGCGCGGGCTTGT
AGGGGCCGTCCATCATGAGCTCGTAGAGCTCCACGGCCTCGGTCATCATGTGGCGCTTCT
GGAACTGCCGGGACAGCTTCATGTAGGTGTCGATGTCGACGTGCACCCCGCCGGCCTTCA
TCTCCTGCACCAGCTCCCAGAACTCACGCAGCGAGTCCTCCCGGCCGAGCACCCTCGCCA
TGGCGTTGTAGGCGACGGACCCGTGCTCGTACCCCCTCTGCCGGCCGGCCCACCGGAAGA
AAGCGAGCGCCTTGGAGGGGACGTCCCTCGCCTCCCGCAGCACCCCGGCCACGGCCGCCT
CCGTGAGCGGCATCAGCTGCTCCGCGACGCCCTCCAGCTTCCTCTCGAGCTCCTCGTCCA
AACCCGCCTGGTCGAGCTCGAGGTCGAGCCCGCGGACGGCGTCGGCGGCGGCGGTGAGGG
GGGTGCCG