barSeed - Barley Seed Development Database

Probe CUST_99_PI415269222

Source Contig TA34046_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_99_PI415269222	Hv_44K_v2	TTTATAAAGTTCGGTAGGAGATTGCTTTGGACCCTGCAATATGTTGCTGCCTGTCGGTTC	1385	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.662	2.071	1.141	0.834	0.351	0.406
Raw	1700.093	2000.848	999.142	1106.098	171.740	213.476

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC05936	1372	3e-25	1296 - 1355	100	60 / 60	plus	ABC05936

Contig Sequence (1464 bp)

>TA34046_4513 1464 Hv_44K_v2
AGCGTCACCGTCGGTGCTCCACCACCCTCCTCCTCACCCAGGATCACCCGGCCGCGGGGG
ACAGAGAATATTATCATCCCGCCTCCCTATTATAATCCCGGCCCCTTCCCGTCTCCATCT
CGATCTCGCCACCACTCCCCCGTTCCCACTCCCCTCCCGGATCTCCCCATTCCGCCATGG
CGATCTCCACCAACGGCTCCTCGCCGCCGGCGCTCAAGTTCCTCATCTACGGCCGCACCG
GCTGGATCGGGGGTCTCCTCGGCAAGCTCTGCACCGCGCAGGGCATCCCCTTCGCCTACG
GCGCCGGCCGCCTCGAGAACCGCGCCCAGCTCGAGGCCGACATCGACGAGGTCGCGCCCA
CGCACGTCTTCAACGCCGCGGGCGTCACCGGCCGCCCCAACGTCGACTGGTGCGAGACCC
ACCGCGTCGAGACCATCCGCGCCAACGTCTGCGGCACGCTCACGCTCGCCGACGTCTGCC
GCGCCCGGGGCCTCGTGCTCATCAACTACGCCACGGGCTGCATCTTCGAGTACGACGCGG
CCCACCCGCTCGGCTCGGGGGTCGGGTTCAAGGAGGAGGACACCCCTAACTTCGTTGGAT
CCTTCTACTCCAAAACAAAGGCCATGGTTGAGGAACTGCTGAAGAATTACGAAAACGTGT
GCACCCTTCGTGTAAGGATGCCTATTTCATCTGATTTGTCCAATCCTCGCAATTTCATCA
CAAAGATCACCCGGTATGATAAGGTTGTGGATATCCCAAATTCAATGACAATATTGGATG
AACTTCTTCCCATCTCAATTGAGATGGCGAAGAGAAACCTCACCGGAATCTGGAACTTCA
CTAATCCTGGTGTGGTGAGCCACAATGAGATACTGGAGATGTACAGGGATTACATCGATC
CAAACTTCTCCTGGAAGAACTTCAACTTGGAGGAGCAAGCCAAGGTCATAGTAGCACCGA
GGAGCAACAATGAACTTGACACTGTTAAATTGAAAACGGAGTTCCCAGAACTTCTGTCAA
TCAAGGAGTCGCTGATCAAAAACGTTTTCAAACCAAATCAGAAGACATCCAAGGCTTGAC
CAAATGGAGCAGTGTGCACAGAGCCTTATGTTGATGTTACTTGTTCGACATACATTTACA
TCGCTCTCCGGTGCTAATCCAATAAGCATGCGTAGTGTTTTATTCCGTCCCGGTCGTGTG
CACGCATTGTTGTTGCAGGAGATAGTTTCTTATAGGAAGTCACCATCCCTTGTCATTACC
AGATTATTACACAGAACACCACATGGTGTTGCTATTGTATCCTATGAATACGGTGGGAAA
TGGACCGAGTGAGGAACAAGGTCCTCTGTTGTATTGTACTATCACATAACTGGAGTGCAT
CATTTTTTATAAAGTTCGGTAGGAGATTGCTTTGGACCCTGCAATATGTTGCTGCCTGTC
GGTTCGTTCANNATAAAAAAAAAT

Homology of Contig TA34046_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g45540.1	312	protein\|synthase, putative, expressed
Brachypodium v1_2	Bradi3g51680.1	301
Arabidopsis v10	AT1G63000.1	301	\| Symbols: NRS/ER, UER1 \| nucleotide-rhamnose synthase/epimerase-reductase \| chr1:23342510-23343859 FORWARD LENGTH=301