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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_9993_PI390587928Hv_44K_v2ATGGATTCAGAAACGACATGAAAATTTCTTCAAGTTGCATGTCAGTGTTTGTCCCTGTTT632GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9961.8961.6370.9480.2160.640
Raw 136.646419.321309.629283.41222.08167.547



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_62143.223169e-2255 - 1169760 / 62minus ABC19853
MLOCMLOC_62143.319469e-2240 - 1019760 / 62minus ABC19853
MLOCMLOC_62143.118589e-22172 - 2339760 / 62minus ABC19853
JLOC1JLOC1_40645.218835e-221652 - 17139760 / 62plus
JLOC1JLOC1_40645.118475e-221616 - 16779760 / 62plus
Harvest21ABC198537063e-2515 - 7410060 / 60minusABC19853
Harvest35U35_246897063e-25633 - 69210060 / 60plus



Contig Sequence (706 bp)

>U35_24689 706 Hv_44K_v2
ACGGTGTAAACTACAGAAAAATCGGCAAGAAAATAAGTAAGCTTGCTTATTTCTACGGCT
ATCATGTGGTGGAGCGCTTTGTTGGACATGGAATTGGAACTATGTTGCATTCTGAGCCAC
TTATCCTCCATCATGCAAATGAAAACTCCGGTCGAATGATTGAAGGTCAAACATTCACAA
TTGAACCTATACTTACAATGGACAAAGCAGAGTGTGTTACATGGGAAAATGGATGGACTA
CTGTCACGGCTGATGGCAGCTGGGCAGCACAGTTTGAGCACACTGTATTGGTCACTAGGA
CGGGCGTAGAGATATTGACGAAACTTTGAGTTCATTCCTTGCTATTGTAGTAAGAAGTTG
TTGAGCCATCTACTTTCAGAATGAGGTGGTTCATAAAGCAGCCCCAGCAGCTGGCCAAGC
ACCCGAATCTCCACAACAACAACTTGCATCCACATGTGGGAAGCCTCCCCTTTATGTAGC
AACCGGCCAGGGGATAAATGTGGGGACATAATATTGCATTGCTTGTGATCCCATTGTTGG
GAGTGGTCGTGTGTCTCGACAATTCACCATGGATGTAGTTTTTCCCCAGATGTTTATATG
TGGTAGTTTAGTTTGTTTGAAGTAGATGCGGCATGGATTCAGAAACGACATGAAAATTTC
TTCAAGTTGCATGTCAGTGTTTGTCCCTGTTTAATNCAAAAGAACA



Homology of Contig U35_24689 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g32590.13583e-60protein|peptidase, M24 family protein, putative, expressed
Brachypodium v1_2Bradi1g26520.43737e-66
Arabidopsis v10None