- Probe CUST_9992_PI390587928
- Source Contig U35_36660
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9992_PI390587928 | Hv_44K_v2 | CCCACAATGAGATTGACAAAGTTGATAAAGGAGGCCTAGATAAAATGACACTTGTTGAGG | 382 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6092.2 | 1394 | 2e-24 | 885 - 944 | 100 | 60 / 60 | plus | ABC06294 ABC06295 |
| MLOC | MLOC_6092.1 | 1458 | 2e-24 | 871 - 930 | 100 | 60 / 60 | plus | ABC06294 ABC06295 |
| MLOC | MLOC_68236.2 | 1157 | 7e-23 | 333 - 392 | 98 | 59 / 60 | minus | ABC06294 ABC06295 |
| MLOC | MLOC_68236.1 | 1327 | 7e-23 | 389 - 448 | 98 | 59 / 60 | minus | ABC06294 ABC06295 |
| JLOC1 | JLOC1_3953.1 | 1491 | 8e-25 | 872 - 931 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45123.2 | 1277 | 4e-23 | 759 - 818 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45123.1 | 1114 | 4e-23 | 764 - 823 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC06294 | 1003 | 3e-25 | 383 - 442 | 100 | 60 / 60 | plus | ABC06294 |
| Harvest21 | ABC06295 | 1107 | 1e-23 | 738 - 797 | 98 | 59 / 60 | plus | ABC06295 |
| Harvest35 | U35_36660 | 507 | 3e-25 | 383 - 442 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2578 | 1365 | 1e-23 | 745 - 804 | 98 | 59 / 60 | plus |
Contig Sequence (507 bp)
>U35_36660 507 Hv_44K_v2 GCTCCCTTCTTCTCAGACGAAGCGCCGCGGTGTTGTTGCCGGGCGTGTCCTCGGGGGAAC CACGGCCCTGCCTGCGCCGGCGCTCACTCGGACGGCTCCCGCGCCGCGCCTCCGGTGGCC GCTTCTTCCTCGACTCCGGCACAAGTTCACACTATGGAAGAACTGAAGCTCACCGGCAAC CATCTGAAAGGGTCCCGTCCTTTGCTAACCTTTTCTTCAAACTTTGACCAGCAGCCTCAC TGGAAGCTATTGAAGGAAATGATAACACAAATTTTTGCTACACCAAAAGATCATCGGAAG GCGAAACCTTTTCATGATCATGTGTTTGTCTTCTCCATTGTGGATGACCACATTTGGTTC AGAAATTATCAGATATCTGTACCCCACAATGAGATTGACAAAGTTGATAAAGGAGGCCTA GATAAAATGACACTTGTTGAGGTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTT GGTGGTAGTTTTGGTGGCCCCACATTG
Homology of Contig U35_36660 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g37870.1 | 332 | 1e-82 | protein|Brix domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g47400.1 | 323 | 5e-85 | |
| Arabidopsis v10 | AT1G52930.1 | 320 | 6e-75 | Ribosomal RNA processing Brix domain protein | chr1:19711261-19713103 FORWARD LENGTH=320 |