- Probe CUST_9991_PI390587928
- Source Contig U35_36661
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9991_PI390587928 | Hv_44K_v2 | CCAAAGCGGTGAGAATTGATTGTGGTATAATTAAATTTGATTTGGTTGTATGGAACAAGG | 321 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.483 | 2.452 | 1.727 | 0.498 | 0.126 | 0.157 |
| Raw | 5078.947 | 5603.090 | 3342.133 | 1272.959 | 141.108 | 190.059 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_15206.1 | 488 | 8e-25 | 336 - 395 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36661 | 482 | 3e-25 | 322 - 381 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36702 | 398 | 8e-21 | 319 - 370 | 100 | 52 / 52 | plus |
Contig Sequence (482 bp)
>U35_36661 482 Hv_44K_v2 CACACTTTGAGATCATGGCTCGTGTCGCTGCACGAATGGCCCTTCTCATCCTAGTTTCGC TGGTTGCCTCAGCGATGTCGTCGGAGGAACTGCATTGCTGCACAGACCATCATGACTGGG GCAATGGGTTGAAGAACAAGGGTTGCAGGCTGCCGGAGCAGAACGTCGAGTGCAACACGT GGTGCCAGTCGGACTGCCGTGGTGGCGAGTGTGTAATGCATGCCCGGCTGCACTTCTGCC ATTGTTACTGTTGAGGAGGCGCGGCGGTATTTCGCCGTTCAAATTTGTATGCAACGAGCT ATAGCTATAGCTAGATCATACCCAAAGCGGTGAGAATTGATTGTGGTATAATTAAATTTG ATTTGGTTGTATGGAACAAGGATATTTAGATTAATAATATGAGAACAGAAATTTAAAATA AATATGTTTTATCAGCGGTGAGTCACTCCTCCTTATACTTTTGTGAAAAAAAAAAAAAAA AA
Homology of Contig U35_36661 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |