barSeed - Barley Seed Development Database

Probe CUST_9978_PI390587928

Source Contig U35_15411

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9978_PI390587928	Hv_44K_v2	CGTTGTGTAACGGATGTGAGTTGATCACGTTCTTCCTGTACATATAGGATTATGAAAAAA	754	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25291.1	605	2e-24	362 - 421	100	60 / 60	plus	ABC03426 ABC03427
JLOC1	JLOC1_17312.1	535	8e-25	362 - 421	100	60 / 60	plus
Harvest21	ABC03427	842	3e-25	755 - 814	100	60 / 60	plus	ABC03427
Harvest35	U35_15411	842	3e-25	755 - 814	100	60 / 60	plus

Contig Sequence (842 bp)

>U35_15411 842 Hv_44K_v2
AACAGGCCACCACAACGAACCAACTTTGATCTAGCCAGTCCCCTGCTTCCTGCTGTGACC
TGTGAGTACTGAGTAATGGCAACCATGGTGTCCTTGAGTTCCTTCTCCGGTGCCGCCGTC
GTCGGCCGCTCCGCCTCCTGGTCTCCGGCGGTGCCGCGCCGGCGCGCCCTCCTCGTCAGG
GCCCAGACCGAGCCGGGTGTCGAGCAGACCAAGGAGGAGACGATGAGCGCATCGACATCC
ACCTCAAACCCAACCCCAATCCCGAGCACGACCCCGGCGGCGCCCAAACCCAAGCCAAAG
GCTAACCCCTCGGTCTGGGACGCGCTCGCGTTCAGCGGCCCGGCGCCGGAGCGCATCAAC
GGCCGGCTCGCTATGGTGGGCTTCGTGGCGGCGCTCTCCGTCGAGGCGGCGCGCGGCGGC
GGGCTACTCGACCAGGTCGGCAGCAGCGCCGGGCTGGGATGGTTCCTGACAACAGCGGCT
GTGTTTTCCGTGGCGTCTCTAGTGCCGCTGCTTCAGGGACAGAGTGTGGAGAGCAAGTCC
AGCGGCGTATGGACCGCCGACGCCGAGCTATGGAACGGCCGCTTCGCCATGCTCGGCCTC
GTCGCACTCGCCGTCACCGAGTTCATCACCGGCACGCCCTTCGTCAACGTCTGAAAGTAG
CTAGTGTGTAGTGTGTACAGTGTACTGCTCCCGTACGTGCGTGTACGTACTGGTTGTCAT
GGTGAGGAACTAGTGGTACGGACTCTTGGTAGAGCGTTGTGTAACGGATGTGAGTTGATC
ACGTTCTTCCTGTACATATAGGATTATGAAAAAAAAGCCAAACCGAAAAAAAAAAAAAAA
AA

Homology of Contig U35_15411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g08160.1	193	1e-57	protein\|early light-induced protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g55560.1	189	1e-74
Arabidopsis v10	None