barSeed - Barley Seed Development Database

Probe CUST_9975_PI390587928

Source Contig U35_15414

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9975_PI390587928	Hv_44K_v2	GCGCTGTGAATTTTAAGCTAACAAATCTTAATGCCAGTAGTACTAACTGTTGTAACCACG	664	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360713	888	2e-24	690 - 749	100	60 / 60	plus	ABC03426 ABC03427 ABC03430 ABC03432 ABC03433
MLOC	MLOC_15699.1	461	7e-23	78 - 137	98	59 / 60	plus	None
JLOC1	JLOC1_10785.1	384	4e-23	78 - 137	98	59 / 60	plus
Harvest35	U35_15414	724	3e-25	665 - 724	100	60 / 60	plus

Contig Sequence (724 bp)

>U35_15414 724 Hv_44K_v2
AGTGTCATCGCCCATCGATTAAGCCAGCACCAACTTCTCAGTTCTTTTCGTACGTTAGCT
TTTCTACTCTCTGCCTTGAGTAATGGCGACCATGGTGGCTTTGAGTTCCTTCGCCGTCGT
TGGCCGGTCCGCCGCCCGCTCTCCAGTGGCGGCCCCGCGCCGGCGCGCCCTCGTCGTCAG
GGCCCAGACCGAGCCTGACATGGACTCGACCAAGGAGACAACGAGCGCATCGACCTCCTC
CCCGAGCATGAGCCCGGCCCCGACCCCGATCCCGGCGGCACCCAAGCCCATGACCAAGAA
GGCTAACCCCTCGGTCTGGGACGCGCTCGCGTTCAGCGGCCCGGCGCCGGAGCGCATCAA
CGGCCGGCTGGCCATGGTGGGCTTCGTGGCGGCACTCTCCGTCGAGGCGGCGCGCGGCGG
GGGGCTCCTCGACCAGGCCGGCAGCGGCGCCGGGCTGGGCTGGTTCCTGGTGACCGCGGG
GTTGCTCTCCGTAGCGTCGTTGGTGCCGCTGCTGCAGGGCCAGAGTGTCGAGAGCAAGTC
GAGCGGCTTTTGGAGCGCCGACGCCGAGCTCTGGAACGGCCGCTTCGCTATGCTCGGCCT
CGTCGCGCTCGCCACCACCGAGTTCATCACCGGCACGCCCTTCGTCAACATCTAAGAGAC
TGTAGCGCTGTGAATTTTAAGCTAACAAATCTTAATGCCAGTAGTACTAACTGTTGTAAC
CACG

Homology of Contig U35_15414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g08160.1	193	4e-56	protein\|early light-induced protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g55620.1	194	6e-70
Arabidopsis v10	None