barSeed - Barley Seed Development Database

Probe CUST_9974_PI390587928

Source Contig U35_15415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9974_PI390587928	Hv_44K_v2	CGTTGCAATTTTGTACCATCGGTGATCGAATTTTGTAAATCTCATGTTTAGGTTGTTTTC	775	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77272.1	319	2e-24	76 - 135	100	60 / 60	plus	ABC03430 ABC03432
MLOC	AK357833	1004	7e-23	750 - 809	98	59 / 60	plus	ABC03427 ABC03430 ABC03432 ABC03433
JLOC1	JLOC1_51537.1	257	8e-25	76 - 135	100	60 / 60	plus
Harvest21	ABC03424	807	1e-24	732 - 790	100	59 / 59	plus
Harvest21	ABC03430	1036	1e-23	735 - 794	98	59 / 60	plus	ABC03430
Harvest35	U35_35971	465	3e-25	118 - 177	100	60 / 60	plus
Harvest35	U35_15415	852	3e-25	776 - 835	100	60 / 60	plus
Harvest35	U35_15416	1050	1e-23	749 - 808	98	59 / 60	plus

Contig Sequence (852 bp)

>U35_15415 852 Hv_44K_v2
TCTCTGCCTTGAGTGATGGCGACCATGGTGGCTTTGAGCTCCTTCGCCGTTGTTGGCCGG
TCCGCCGCCCGTTCTCCAGTGGTGGCCCCGCGCCGGCGCACCCTCGTCGTCAGGGCCCAG
ACCGAGGTGAGCTTGCACGTCGCACGCACGATAACTGTTTCGGTCTTTGGATGCTTGCCG
GCTAGTACTATTACTTCAAGACTCGATCTCACTGTAAACTTGTTTGTGTATGTGCAGCCT
GACATGGACTCAGCCAAGGAGACGACGAGCGCGTCGACCTCCCCCTCCCCCTCCCAGTAC
ACGAGCCCGTCCCCGACCACGATCCCGGCAGCACCCAAGCCCGTGACCAAGAAGGCTAAC
CCCTCGGTCTGGGACGCGCTCGCGTTCAGCGGCCCGGCGCCGGAGCGCATCAACGGCCGG
CTGGCCATGGTAGGCTTCGTGGCTGCGCTGTCCGTCGAGGCGGCGCGTGGCGGTGGGCTC
CTCGACCAGGCCGGCAGTGGCGCCGGGCTGGGCTGGTTTCTGGCGACCGCAGGGGTTTTC
TCCGTAGCGTCGCTGGTGCCGCTGCTGCAGGGCCAGAGCGTGGAGAGCAAATCCAGCGGC
ATCTGGAGCGCCGACGCCGAGCTCTGGAACGGCCGCTTCGCTATGCTCGGCCTCGTCGCG
CTCGCCGCCACCGAGTTCATCACCGGCGCGCCGTTCGTCAACATCTAAGGGATTGTAGCG
CTGTGGGTTTTCATTTGGAACTGACAAATTGTAATAACACTAACCGTTGTAGCCACGTTG
CAATTTTGTACCATCGGTGATCGAATTTTGTAAATCTCATGTTTAGGTTGTTTTCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_15415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g08160.1	193	3e-57	protein\|early light-induced protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g55560.1	189	8e-69
Arabidopsis v10	None