barSeed - Barley Seed Development Database

Probe CUST_9966_PI390587928

Source Contig U35_15423

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9966_PI390587928	Hv_44K_v2	TGAGACAGTTTGACTACTTAGAGAACCACATGATTGCCTGCTATATTTATTTGGTTTTGC	1083	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374192	1222	2e-24	1124 - 1183	100	60 / 60	plus	ABC04226 ABC38813
MLOC	MLOC_8651.1	1431	2e-24	1059 - 1118	100	60 / 60	plus	ABC04226 ABC38813
JLOC1	JLOC1_5739.1	903	8e-25	708 - 767	100	60 / 60	plus
Harvest21	ABC38813	609	3e-25	35 - 94	100	60 / 60	minus	ABC38813
Harvest35	U35_42857	609	3e-25	35 - 94	100	60 / 60	minus
Harvest35	U35_15423	1214	3e-25	1084 - 1143	100	60 / 60	plus

Contig Sequence (1214 bp)

>U35_15423 1214 Hv_44K_v2
CTTCCAGCAGCTTCTCCCCCCTTCCCCACTGCTCCCAAGCAAAGGCGAGAACCCTAGCCT
CACCAGAACCGCACGGAGATCCCGACCATCACCGCGATGCAGGCCCCTGCGAAGCCCCCC
GTCGAACTCCCGCCGCTGGTGGCGCCGCCGCCGCGGGTGAAAGCGCCGACCCCGCGCCCC
CCTCCGCCGGCCTCGCTCCAGCCCGACTCCCCGGGCGTCTTCTTCACCAACGCTGCCGCA
GCCGCCCCACTGGGCTCCGCCCACCGCCGCATCGCCATCGCCGTCGATCTGTCCGACGAG
TCCGCCTACGCCGTAAGCTGGGCCGTCGCCAACTACCTCCGGCCCGGGGACGCCGTCATC
CTCCTGCACGTCCGCTCCACTAATGTTCTATACGGCGCTGACTGGGGCTCCGTCACCCCC
ACGTCCCCCGAAGACGACGCTGAGGTCGCCGCGCGCAAGATGGAGGAAGACTTCGACGCC
CTCACCGCTTCCAAGGCCGACGACCTGGCCAAGCCACTCGAGGAGGCCAAGATCCCCTAC
AAGATCCACATCGTCAAGGATCACGACATGAAGGAGAGACTCTGCCTCGAGGTGGAGAGG
CTAGGGCTTAGCGCGGTCATCATGGGGAGCAAGGGGTTTGGTGCGGCGCGGCGGGCCAGC
AAGGGAAGGCTCGGGAGTGTGAGCGATTACTGCGTCCACCACTGTATTTGCCCCGTGGTG
GTGGTGCGTACCCCTGATGATGCTGTAGCAGAGGGCGGGGAGTCCGCCACTGCGATGGAG
GCGGCGGTTGGTGCAGAGGACGTGCTCCACCCTGTGCCAGAGGAGGATGCCGAGTACCAT
GACGCCGCTGAGGAGCATAAGGATACTTGATTGGATCCATGCATCAATGTCCTGTTGGAT
CCAGCATGTAAAGGTCCTAGCATTCGACTGTTGGCTGAGTGCTACCTCGGGGTTTCTGCT
GAGCACATTAGCTGTTTGTTAGACTTTTACTGTTTTATGTCTATCTGTGCTTCCACTCTG
ATGTATTTGGTGAACATTTGTTCTCTAGAACTTTTGTGCTTATTGGATACCAAATTATGC
TGATGAGACAGTTTGACTACTTAGAGAACCACATGATTGCCTGCTATATTTATTTGGTTT
TGCTAAAAAAAAAAAAAAAAAAATTTATCTTCGGTTCAATTGATTTTGTGGGGGAGGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_15423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36600.3	269	1e-101	protein\|universal stress protein domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g25170.1	258	7e-121
Arabidopsis v10	AT1G11360.1	242	1e-68	Adenine nucleotide alpha hydrolases-like superfamily protein \| chr1:3822171-3822899 REVERSE LENGTH=242