barSeed - Barley Seed Development Database

Probe CUST_9965_PI390587928

Source Contig U35_15424

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9965_PI390587928	Hv_44K_v2	GTCTAGTTTTCTGTATGTACATGTTTGTGTCCAATAAATGCAGTGTTGGCATGTTTCAAA	1384	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371305	3251	7e-23	3187 - 3243	100	57 / 57	plus	ABC04225 ABC04227 ABC04741 ABC38469
MLOC	MLOC_66076.1	1613	7e-23	17 - 73	100	57 / 57	minus	ABC04225 ABC04227 ABC38469
JLOC1	JLOC1_43529.1	1510	4e-23	1444 - 1500	100	57 / 57	plus
Harvest21	ABC36607	571	1e-23	26 - 82	100	57 / 57	minus
Harvest35	U35_15424	1460	3e-25	1385 - 1444	100	60 / 60	plus
Harvest35	U35_40254	571	1e-23	26 - 82	100	57 / 57	minus

Contig Sequence (1460 bp)

>U35_15424 1460 Hv_44K_v2
TCGAGCACTGTTGGCCTAAATCACACAGCTCGGTTGCAAGCACAAGGGGCAGCACGACCA
TTCCTTCCTTCCTTCCATCCACCAGCCTACTCTCTCGATCCCTCCATTTCAAACCAAAAC
CTCCAATCAGCATCACCCCACCCCACCCCACCCCGGATCAAATCCGCCACCGAGAAATCC
CGGAATAAACTCGGCGAGAAGAGTCAGCGCAAAAACCCTAGCCAGCTGCCCAGCTCCCCA
TGGCGGCCAACTCCAACCCCTCCCCGTCGGCCGGCGGCGACGTGCCGACCCCGGCGCTGC
CGCCGGTGCGCCTCGCGGCGGGGCAGGCGGCGACGATCCAGCCCTCCTCGCCGCGCTACT
TCTTCTCCTCGCTGGCCGGCAAGGACGCCTCCTCCCACCACCGCCGCATCGCCATCGCCG
TCGACCTCTCCGACGAGTCCGCCTTCGCCGTGCGCTGGGCCGTGCAGAACTACCTGCGCC
CCGGCGACGCCGTCGTGCTCCTCCACGTGCGCCCCACCTCCGTCCTCTACGGCGCCGACT
GGGGCTCCATCCCCGTCTCCGTCGCCGACGACGACGCGGAGGACGCCGCCGCCGCCGAGG
GCTCCGACTCCGCATCCGCCTCCGCGGAGGAGCTGCAGAAGAAGCGGGAGGAGGACTTCG
ACGCCTTCACGTCCACCAAGTCGCAGGACCTGGCGCAGCCGCTGGTCGCCGCGCAGATCC
CCTTTAAGATCCACGTCGTCAAGGACCACGACATGAAGGAGCGCCTCTGCCTCGAGGCCG
AGCGCCTTGGCCTGTCCGCCATGATCATGGGAAGCCGCGGATTTGGGGCCTCGCGCAAGG
GCGGGAAGGGGAGGCTCGGGAGTGTTAGTGATTACTGTGTGCATCACTGCGTCTGCCCGG
TTGTGGTTGTTCGCTACCCAGATGACGCTGCAGGTATCCCCGGGGAAGCAGCAGCAGCAG
CAACAGACGAGCTGCACACTGTGCCGGAGGATGAGCCCGTGTATCATGATGCGCCTGATG
CACACAAAGAAAACTGAGGCAATGGCATCCAACTGGAGCGCAAGGGAACCATGAGGCTTG
TGTACCCAGGCGATCCCTACGTATCTGAGCGAAGCAACTCTATCCAGCATCCATCCACCG
CACAAGCACGCTCGTATCATGAACTGTCTTTGTCGGCAGGCTTTAGCGCCGGGCTCTCAG
GTGCCGGGGGTCTTTGTTGGTTTGCGTCGTGTGATGTTTTATGTTGTCGACTGCATATGC
GCTGTGTGCGTGAGCTGTATTTTTATGAACCCCTCTTGTTTTGTAAGGCCAGGCTTTCCC
ATGTATGTGTACCTGTTGTATTCTTCCCTAGTTTTCTGCATTGGATACTTGGGTAATGAA
CGCTGTCTAGTTTTCTGTATGTACATGTTTGTGTCCAATAAATGCAGTGTTGGCATGTTT
CAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15424 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57450.1	273	2e-113	protein\|universal stress protein domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g51890.1	268	1e-124
Arabidopsis v10	AT1G11360.1	242	2e-67	Adenine nucleotide alpha hydrolases-like superfamily protein \| chr1:3822171-3822899 REVERSE LENGTH=242